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Homology
BLAST of mRNA_C-linearis_contig11.1357.1 vs. uniprot
Match: D8LKM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKM9_ECTSI) HSP 1 Score: 313 bits (801), Expect = 5.030e-99 Identity = 180/270 (66.67%), Postives = 202/270 (74.81%), Query Frame = 1
Query: 37 VMSRLASACLALTLSCASGFIPPAPHASFPRPRARESRTAVDLHAGGGACGEXXXXXXXXXXXPDTSSSLQQHALTLDTTNLLSLDLSGAMAHHGDGGGALASAVTPLLVASAAPGNPSTASGLFGIAALVIALGAGALVFSTVTGKNGLGAFLTQEKGTNPFYQDTMAKYVPKTPDILNKIRLPDLDFVDVYNQPPSPDDYVDMEEDTTPGPVRTNTGTPDPNAIATAESLRQKLLMAVQAKDYDLASSLERELANFMRKNGMGFEGDQ 846
++ RL +ACLAL +S A+GF+ PAP ASFP TAVDL GG + GE PD SS L Q D + + D+ G A DGG + S V+ LL+ASAAPGNPSTASGLFGIAALVIALGAG LV STVTGKNGLGAFLTQEKG+NPFYQDTMAK+ PKTPDILNKIRLPDLDFVDVYNQPP+PDDYVD+E+D T N G PD + +ATAE+LRQKLLMAVQAKDYDLASSLERELA F+RKNGMGFEGDQ
Sbjct: 1 MVPRLFAACLALVVSYAAGFVSPAPRASFPSTTRARGITAVDLLPGGASGGEIATAI------PDASSLLLQRVGLADVGGVHA-DVVGPAAAAADGGEGVGSLVSSLLLASAAPGNPSTASGLFGIAALVIALGAGVLVASTVTGKNGLGAFLTQEKGSNPFYQDTMAKFTPKTPDILNKIRLPDLDFVDVYNQPPAPDDYVDLEQDVT-FDAMANKGAPDADTVATAEALRQKLLMAVQAKDYDLASSLERELATFLRKNGMGFEGDQ 262
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-16_003600.1 |
| Exons | 6 |
| Model size | 1970 |
| Cds size | 810 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927463.429707-UTR-C-linearis_contig11:3088414..3089535 | 1622927463.429707-UTR-C-linearis_contig11:3088414..3089535 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 3088415..3089535 - |
| 1690879715.5237253-UTR-C-linearis_contig11:3088414..3089535 | 1690879715.5237253-UTR-C-linearis_contig11:3088414..3089535 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 3088415..3089535 - |
| 1622927463.4994173-UTR-C-linearis_contig11:3093769..3093808 | 1622927463.4994173-UTR-C-linearis_contig11:3093769..3093808 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 3093770..3093808 - |
| 1690879715.5918489-UTR-C-linearis_contig11:3093769..3093808 | 1690879715.5918489-UTR-C-linearis_contig11:3093769..3093808 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 3093770..3093808 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927463.4391842-CDS-C-linearis_contig11:3089535..3089631 | 1622927463.4391842-CDS-C-linearis_contig11:3089535..3089631 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3089536..3089631 - |
| 1690879715.5315042-CDS-C-linearis_contig11:3089535..3089631 | 1690879715.5315042-CDS-C-linearis_contig11:3089535..3089631 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3089536..3089631 - |
| 1622927463.4492342-CDS-C-linearis_contig11:3090288..3090360 | 1622927463.4492342-CDS-C-linearis_contig11:3090288..3090360 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3090289..3090360 - |
| 1690879715.5389476-CDS-C-linearis_contig11:3090288..3090360 | 1690879715.5389476-CDS-C-linearis_contig11:3090288..3090360 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3090289..3090360 - |
| 1622927463.46151-CDS-C-linearis_contig11:3091234..3091384 | 1622927463.46151-CDS-C-linearis_contig11:3091234..3091384 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3091235..3091384 - |
| 1690879715.5541613-CDS-C-linearis_contig11:3091234..3091384 | 1690879715.5541613-CDS-C-linearis_contig11:3091234..3091384 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3091235..3091384 - |
| 1622927463.4709322-CDS-C-linearis_contig11:3092035..3092120 | 1622927463.4709322-CDS-C-linearis_contig11:3092035..3092120 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3092036..3092120 - |
| 1690879715.5664499-CDS-C-linearis_contig11:3092035..3092120 | 1690879715.5664499-CDS-C-linearis_contig11:3092035..3092120 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3092036..3092120 - |
| 1622927463.4802814-CDS-C-linearis_contig11:3092734..3093038 | 1622927463.4802814-CDS-C-linearis_contig11:3092734..3093038 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3092735..3093038 - |
| 1690879715.5763602-CDS-C-linearis_contig11:3092734..3093038 | 1690879715.5763602-CDS-C-linearis_contig11:3092734..3093038 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3092735..3093038 - |
| 1622927463.4898555-CDS-C-linearis_contig11:3093666..3093769 | 1622927463.4898555-CDS-C-linearis_contig11:3093666..3093769 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3093667..3093769 - |
| 1690879715.584568-CDS-C-linearis_contig11:3093666..3093769 | 1690879715.584568-CDS-C-linearis_contig11:3093666..3093769 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 3093667..3093769 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1357.1 >prot_C-linearis_contig11.1357.1 ID=prot_C-linearis_contig11.1357.1|Name=mRNA_C-linearis_contig11.1357.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=270bp
MSRLASACLALTLSCASGFIPPAPHASFPRPRARESRTAVDLHAGGGACG EEMAAAAAAAIMPDTSSSLQQHALTLDTTNLLSLDLSGAMAHHGDGGGAL ASAVTPLLVASAAPGNPSTASGLFGIAALVIALGAGALVFSTVTGKNGLG AFLTQEKGTNPFYQDTMAKYVPKTPDILNKIRLPDLDFVDVYNQPPSPDD YVDMEEDTTPGPVRTNTGTPDPNAIATAESLRQKLLMAVQAKDYDLASSL ERELANFMRKNGMGFEGDQ* back to topmRNA from alignment at C-linearis_contig11:3088415..3093808- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig11.1357.1 ID=mRNA_C-linearis_contig11.1357.1|Name=mRNA_C-linearis_contig11.1357.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5394bp|location=Sequence derived from alignment at C-linearis_contig11:3088415..3093808- (Chordaria linearis ClinC8C monoicous) CGACCTACAGCAGTAGCACACACGCACACCGCCGTCGTTATGTCACGACT
TGCGTCAGCTTGCCTTGCGCTCACACTATCATGTGCGTCGGGGTTCATCC
CCCCTGCACCTCACGCGTCGTTCCCGAGACCAAGAGCTAGAGGTGAGGGG
AGTTGGCAGAGTGCATCCGAGTCATGTTTACCTCCCGGGCCGTCATGATT
GCTTCCCTCTTCGCCCTTTGCGGGTGTTGCCGTCGGCACCCACACCGCTT
GTGGGTCGGGAGGTCAGCTGTGCTGTTTTTATATGTGTTCGCCTGCAGCT
CACCCCTTTCAAAGGGTGGCGGTGAAAGTCGAGCGTTGACTACATGTAGC
AGCTGTTGACCGGCCTACAGGTGCAACTCAAGTCTAGACTAAGCCTGTTT
CCCCGCCCCCCCCCGCCGCCGCTATCGCCGACCGAGATGCGCCTCCTCGA
GTAGTCTGTGCCCATTGGCAACTGTTGTGCGCAGCCGCCCGTTGTTAGGT
TGTTGTTTTCATCACCTGCAACCCTCTGAGCGTGTGTAATGGACAGCATA
GACTTAAGTCTATATCGAGGACAAGGAGCATCCGGCGGTCCATTGCCAGA
CGGTGGGTTACAGGCAGTGGTGTGCATCACTTACAGGTGTGTGTCTTGGC
GCCGCCGGCGTCTTCCGGTAGCGAAGTGACAACTCCCTTTACAGCGATAG
CAGGGGCAAGCAACGTAACCCCACCTCCCGACCCTTTTTTGCCCTCATTT
TTTGGACGCGCGAACGGCAGAAAGCAGAACCGCCGTAGACCTCCACGCGG
GGGGGGGTGCCTGCGGAGAAGAAATGGCGGCGGCGGCGGCGGCGGCGATC
ATGCCCGACACGTCGTCGTCGCTGCAACAGCATGCCCTTACCCTTGACAC
GACGAACTTATTGAGCCTTGATCTCAGCGGCGCGATGGCCCACCACGGCG
ACGGAGGAGGAGCGCTGGCGTCGGCGGTCACCCCTCTGTTGGTAGCGTCG
GCGGCGCCGGGGAACCCGTCCACGGCCTCGGGTCTTTTCGGGATCGCCGC
GCTCGTGATTGCCCTTGGAGCAGGGTGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGGAGGACACCGATGTGTCGTATGTCTGTAGATGAGG
TGATGTTTTTGTTTTTTTGTTTCGGCCTTGTCGGGCTGCTCATTTTCCGT
GACTGGGGCGCCGTACAGTCGGTCGGCCTGTTCAGTCGATAAGGGCGCGC
GGGCTGGCTGCCGCCTTTGTTGTCGATTTCCTGTTGTGAACCCACGGCTT
TTCTGCACCAACTGGAGTGGGTAGAGTAATCGTAGCGGACAAGAATGGCG
CGCCACCACACTCGGCGAAAATCTCAGTCCGACCGAATCAAAATCATTTT
TTTCACTTATGCTCTGCACCCGACGCACGGGTTAGCTGTCACTGCTGTAA
CAATCGCCCCCCGCCCTCTCTCTGTGTCTCTCTGTCGTTCTCTCTCTCTC
TCTCTCTTTCTCTCTCTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTGTCGTTCTCTCTCTCTCTTTCTCTCTCTCTCTGTCGTTC
TCTCTCTCTCTCTCTCTCTCTCTTTCTCTCCCCGCCAGGGCTTTGGTGTT
CTCGACGGTGACTGGGAAGAACGGCTTGGGGGCATTCCTCACCCAGGAGA
AGGGCACCAACCCGTTTTATCAGGTAGATATATAGACTACTATGCTGCGG
GCTCGCACCCACTAGACTGACAAACTTTGGAGTGTGCATGAGCCTCTGTC
GTGCCTTGTTGTTGCGCGATAGTTGGGGGCCAGGGAAGCCCCCGCGGGCG
CACCACCGTGACACGATCAGGATCGTGCGGTTCTTTGCCCGCCCGTCCTT
CCGTCTGTGCAAGAGAGCCTGGTTTCCAAGAGGGATGCTTGAGTTTGTTT
TTTGTTTTTTCACGCCAAGGCGAAAGCGATTGGTAGACGACGGTCGAATC
TATCCAGCCGTGCTCGCGGACGAACAACACCGTCAGCTCTGCACCCACGT
CGCGTTTACATACGTACTTCGTGTGGTTTCGCCAAACCTCTCCCTCTCTC
CCTTTCCAATGTATCTCTCCCTTCCTCTTGGTTTGACCGACTGCTTCCAA
GCACTCTCTCCATCCTCGGTCCCTTTCCCTTCATTGCCTTGAACGCTAGT
TTGCTCGGAGGCACCGATCGAAGACTTCCGACTTCACACTCCCACCCAGG
CGTGCTCTCGCCCGCCCGGGATCTCAGAGCGCTCCGATCAATCAAATCCT
CTTCCCGTGCTGATGCTGTGATACACACGCGGGGGGGGGGGCTCTTTCCC
AACACTTTCTTCTTGTTACCACAGGACACCATGGCCAAGTACGTGCCGAA
GACGCCCGACATTCTCAACAAGATTCGGTTACCCGACCTGGACTTCGTGG
ACGTGTACAACCAGCCGCCGTCGCCGGACGACTACGTAGACATGGAGGAA
GACACCACTCCTGGCCCGGTGAGGGTAAGGCACGAGGCGGCGTGCAGGGG
GCGGAAACAAATCCAAGGGTACACTTCCAATTGTACAAAGTTGAAACAAA
TCCAAGGATACACTTCCAATTGTACAAAGTTGAAACAAATCCAAGGATAC
ACTTCCAATTGTACAAAGTTGAAACAAATCCAAGGATACACTACCAATTG
TACAAAGTTGCATGTACTTCGTTTCAGGTGTTTTTTTAAATGTAACTGCT
GTGGACCTGTGGCTGTTGGCGCCTGCTGTCCAGCTTTGGGATCCACATGA
TACGAGACCACCACACGCCTCTCGAGTGATTTTCAGACAACATCTTTGCT
CCGCAACAGGGTAGGTAGGAGGCCAGTATACTCTAGGGCACGTTCGTCCT
CGGAAATGTTTTGACGAGCCCCCGTATCGAGGTAGCTTTGCACACAGGTC
TCACATACTACGGTGGTGGGAGGCGTCTGTCCGTTTCCGGCCAACACAAC
AAAAGAGCATTTCCGGCCAACTTGGCTTCGATACGATAGCAGGATGTTGT
TTACAGCTTTCATGCTTTGTCAAGGTACGAGAGGCTCGCTCTCCAGAGTA
GCCGGGCTATCCAGCAAACCCCGCGCGATCGATCTCAAGGTGTCCCTCTG
ACACTGCTCTTTCAACCAACATCTCTGCCCTAAATCCGACGAAACGTAGT
CCACGTGCCCCCCGCTCAGCCCCACCCACCATCCCGGGCGACCCACTGCA
CCCCTGCTCGTCCAATCCCTCTGTTTTATCTGATATGCGTGTGTTTTTTC
CCCTTGGCTGGCGCTGCCTGTCTCTCTTGGGCGTCGCTGCGGCGTCTGTG
TCGTGTGGTGACGGTTTCGCCGGTGCGGACGGACGGGCGGACGGTCAGAC
GAACACCGGTACGCCGGACCCGAACGCGATCGCTACCGCCGAGAGCTTGC
GGCAGAAGCTGCTCATGGCGGTGAGGGGGTGATGGCGACGAAAACATGAC
GAGCCGAGGTGTTTCGAAGCTGCTGTGCATATCACCTACTTCGAGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAGGAAGTCGTACGCA
CACAAGATGGCGAAAGCTTTTACCTGGGATGCATATACTTCGTATGTGGT
TTTTTGTGCAGCTCGCTCGGCCTTGACGCCCCTCGCCGAGCGTCTAGCGG
CGGCTGGCCCTCGGCGGTTTTTTGAACCTCATCCGCCCCTCAAGGCTTCT
TTTTTGTCGAAGCCAGGTCTATATGGCTACATAGCAACTGCAGCTCTTTG
TGCTCAACGAGTAAATTTACGTCCCTTTTGAGATTAAAAAAAAATCACCC
CCTATTCTTTTGGGTCTTGATGCGCTTGATGCTTGATGCTTGATGCTTGA
TGCTTGGTGATGGGCTGTTTTCGCTCAAACAGAGCGAAAAAGGCACCACC
GCCACATCTCCGCCCCCCGGAATGGCAGCCTGCCAACTTGGCCTCTTTAT
CTCCGCGCATGTAGAAGCATATCCGGAGAACAAACAAACAAACAAAAAAA
TCACCCTCTCCTCACCCGTTTCATGTCCAATTTTCGGCAACGCTGCTGGA
CCGGTCGGTTTTTTCCTTCCTCTTCAGGTGCAAGCGAAAGACTACGATCT
AGCCTCATCCCTCGAACGCGAGCTGGCCAACTTCATGCGCAAGAACGGGA
TGGGCTTCGAGGGCGATCAGTAGTAGACCATCGGGTGTGGCTTGGTTGAT
TTTGTTTTAGCCCTGTTGCCGTGCACACCCTTTTCTCCCCGCGGTTGATT
CGGCCCAACTAGTCAATCAACGTAAACCGGCGCGTTGCCTTTCAGAAGCC
GCATTTCGAGGCTTCTGACAACAGCACCCCCGGCGGCATGGTCTCTGCGC
TCGTTTATCCAAGACATGATACCCCTTGGCGGCGGCGACAGCAGTAGTAG
TAGTCGTAGTTTCGAGGGGCCGGGCACTTATTGACATTGGTGTTGTGTTT
TTCGGGCGGTTGACGTCAACCGCTGATAACGACGACCAACCTTCGTCGAA
ACCGACTAATCGAATCGAATCGAAGCGAATCGAGAATCGAGAATCGAATC
GATACCTAAATTTAGTGATATATTTTCGCCGTCGAGCTCTGTAAGCCGGT
CGGCCCTGTTGTTCTCTTGACAGCAATCGTGTAGGGCAGGAGCACTACTC
GTATGGATGGTGGGGTGGATGCCCTCCGGTGGGAGCGAACCCGGCGAGAC
GAAACGTGTTAGGTGGGGCACGGGGCGGGAAGCGCTCAGTTTTACCAATG
AAAGGCGCCGGGCGTGCTCTTCGCGTTTGTATTTGATCATGTAGAGTCCT
CATTTGCGCATAATTGGGTAGTAGCTGGAGAGGGGAAGGCTGTACTCCTG
TGATTGGAGTTGTTGTGTGGATGTGGGCGCGGGCAAGGTGGGTTGGTGTT
GCAAATGCGTCAAACAGGAAACGGTTGCACGGTTATGTTACGTCCGCTCC
CAAGTAAGTTGCCCTCAGAGTAAGACGTGCTACACTGCAGGTGCATATTT
TGATGTGTTCGATTCGCTCCGACGGCAAGGCATGGGGTGGCATCGGGGCC
CGCGGGCAAGCGCGTTCGCTTGCCCGTGCTGCACGCATTTGCGAAGTCGC
AGCTTTGCCTTGTAGACCGGCGGGCCAAAGAGAGCCATGACCCTGGGTTG
GAATTGAGCCAAAAAAATCACATTATCACCTCGCCGGGGCATGTTGTGAG
ATCTGTTGCCGCATTGAAACAGAAGACGCAGCACCAAACGCTGAGTTACA
TTATTTCCCTCCCACGCGACTCTGCCGACGCTGCTTTGCCGTTT back to topCoding sequence (CDS) from alignment at C-linearis_contig11:3088415..3093808- >mRNA_C-linearis_contig11.1357.1 ID=mRNA_C-linearis_contig11.1357.1|Name=mRNA_C-linearis_contig11.1357.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at C-linearis_contig11:3088415..3093808- (Chordaria linearis ClinC8C monoicous) ATGTCACGACTTGCGTCAGCTTGCCTTGCGCTCACACTATCATGTGCGTC GGGGTTCATCCCCCCTGCACCTCACGCGTCGTTCCCGAGACCAAGAGCTA GAGATGTCACGACTTGCGTCAGCTTGCCTTGCGCTCACACTATCATGTGC GTCGGGGTTCATCCCCCCTGCACCTCACGCGTCGTTCCCGAGACCAAGAG CTAGAGAAAGCAGAACCGCCGTAGACCTCCACGCGGGGGGGGGTGCCTGC GGAGAAGAAATGGCGGCGGCGGCGGCGGCGGCGATCATGCCCGACACGTC GTCGTCGCTGCAACAGCATGCCCTTACCCTTGACACGACGAACTTATTGA GCCTTGATCTCAGCGGCGCGATGGCCCACCACGGCGACGGAGGAGGAGCG CTGGCGTCGGCGGTCACCCCTCTGTTGGTAGCGTCGGCGGCGCCGGGGAA CCCGTCCACGGCCTCGGGTCTTTTCGGGATCGCCGCGCTCGTGATTGCCC TTGGAGCAGGAAAGCAGAACCGCCGTAGACCTCCACGCGGGGGGGGGTGC CTGCGGAGAAGAAATGGCGGCGGCGGCGGCGGCGGCGATCATGCCCGACA CGTCGTCGTCGCTGCAACAGCATGCCCTTACCCTTGACACGACGAACTTA TTGAGCCTTGATCTCAGCGGCGCGATGGCCCACCACGGCGACGGAGGAGG AGCGCTGGCGTCGGCGGTCACCCCTCTGTTGGTAGCGTCGGCGGCGCCGG GGAACCCGTCCACGGCCTCGGGTCTTTTCGGGATCGCCGCGCTCGTGATT GCCCTTGGAGCAGGGGCTTTGGTGTTCTCGACGGTGACTGGGAAGAACGG CTTGGGGGCATTCCTCACCCAGGAGAAGGGCACCAACCCGTTTTATCAGG GCTTTGGTGTTCTCGACGGTGACTGGGAAGAACGGCTTGGGGGCATTCCT CACCCAGGAGAAGGGCACCAACCCGTTTTATCAGGACACCATGGCCAAGT ACGTGCCGAAGACGCCCGACATTCTCAACAAGATTCGGTTACCCGACCTG GACTTCGTGGACGTGTACAACCAGCCGCCGTCGCCGGACGACTACGTAGA CATGGAGGAAGACACCACTCCTGGCCCGGTGAGGGACACCATGGCCAAGT ACGTGCCGAAGACGCCCGACATTCTCAACAAGATTCGGTTACCCGACCTG GACTTCGTGGACGTGTACAACCAGCCGCCGTCGCCGGACGACTACGTAGA CATGGAGGAAGACACCACTCCTGGCCCGGTGAGGACGAACACCGGTACGC CGGACCCGAACGCGATCGCTACCGCCGAGAGCTTGCGGCAGAAGCTGCTC ATGGCGACGAACACCGGTACGCCGGACCCGAACGCGATCGCTACCGCCGA GAGCTTGCGGCAGAAGCTGCTCATGGCGGTGCAAGCGAAAGACTACGATC TAGCCTCATCCCTCGAACGCGAGCTGGCCAACTTCATGCGCAAGAACGGG ATGGGCTTCGAGGGCGATCAGTAGGTGCAAGCGAAAGACTACGATCTAGC CTCATCCCTCGAACGCGAGCTGGCCAACTTCATGCGCAAGAACGGGATGG GCTTCGAGGGCGATCAGTAG back to top
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