prot_C-linearis_contig11.1349.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1349.1
Unique Nameprot_C-linearis_contig11.1349.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length553
Homology
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BLAST of mRNA_C-linearis_contig11.1349.1 vs. uniprot
Match: D7FM63_ECTSI (CCT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM63_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 3.550e-69
Identity = 237/531 (44.63%), Postives = 266/531 (50.09%), Query Frame = 0 
Query:   58 AWDPNDEPLPDILCPPLRSVSSLVMSLDAEEGGVWTAARNNNNANTNXXXXXXXXXXXXXXXXTYGAAKDAAVSGAMGSKTLYMFMSSLPSPPTPSMDTDDQLTREQSFPPPF-RTRLNXXXXXXPMDMLPSSSLNSGWAAVPTP-TSNSNTSGGGSMVGGGGLFSGTGGAPSLS--KFLGLGYPAPPL-------------NWGGGPEQDDAPXXXQVHRGXGNGGPSLGNEGQHGVFYDPXXXX----SHRQRHSSFDKLAEMIPGIPHWTTPSSPSTSAPXXXXXXAEAARE-QLHG---DGXXXXXXXXXXGSIKAEAADALTPASSPSR----ATPPTRGRQQHPTSSRPEKMKRQHQRRADSPPRARWXXXXXXXXXXAAAVAERAITKRPQPSGTGKRSAEPPLSCGPVRPGGGPVDLAQQERRLVKIQRYLYKRSRRKFAKFTRDASPSRSRPKAAAKRPRVKGKFVKTVPDFVSVNDRHP--REDTTGVAAADQQDA---------ASPPSPQQSPAAGGVG 548
            AWD NDEPLPD + P LRSVSSLVMS+D E+G   T+      A  N                +           A+GS  L M M+  P PPT  MD++  L+REQS+PPPF R R        P   +  S      A+  TP +S S T                   PSLS  KF GLG+P                  W    E D A    + H G G GG SL +E  H  ++          S R R  SFDKLA MIPGIPHW  P SPS+S  XXXXXX       +LH     GXXXXXXXXXX           TP  SPS     A P +RGRQ   T +  +  K  H   ADSP  A W         X AAVA     K+   SG GKR+ E PLSCGP R GGGPVDLA+QERR VKIQRYLYKRSRRKFAK TRDASPSRSRPKAA  RPR+KGKFVKT PDFVSVN   P  RED  G   A  +           A  P PQ   AAGGVG
Sbjct:    2 AWDDNDEPLPD-MAPILRSVSSLVMSMDPEDGMSATSPCVTATAGRNRGTNNMVGTCNSRSSSSAAERAKTQNGAALGSNALDMLMA--PLPPT-LMDSNTCLSREQSYPPPFGRPRFGRDPSFPPPVQVGRSIA----ASTETPCSSGSGTXXXXXXXXXXXXXXXXXXXPSLSSGKFQGLGFPGTGXXXXXXRLGVKQERQW----ENDHA--GGRDHGGGGTGGRSLSDEDHHTDYHPDDIIGGILPSSRPRRPSFDKLAAMIPGIPHWPVPPSPSSSXXXXXXXXXXXESSGELHAPAASGXXXXXXXXXXXXXXXXPLRTTTPRLSPSAXXXXAAPSSRGRQPKMTRADKKPKKHHHNPTADSPTTAPWTAPTLPSPAXXAAVAASIPPKKTPSSGNGKRALETPLSCGPARSGGGPVDLAKQERRRVKIQRYLYKRSRRKFAKSTRDASPSRSRPKAALLRPRIKGKFVKTTPDFVSVNAGGPPQREDGDGDGLAQWEPTDMLAGNINNALSPKPQV--AAGGVG 516
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1349.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM63_ECTSI3.550e-6944.63CCT domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010402CCT domainPFAMPF06203CCTcoord: 460..505
e-value: 7.3E-7
score: 29.1
NoneNo IPR availablePANTHERPTHR31319FAMILY NOT NAMEDcoord: 23..532
NoneNo IPR availablePANTHERPTHR31319:SF10CCT MOTIF FAMILY PROTEINcoord: 23..532

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3003204..3004862 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1349.1mRNA_C-linearis_contig11.1349.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 3002842..3004862 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1349.1 ID=prot_C-linearis_contig11.1349.1|Name=mRNA_C-linearis_contig11.1349.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=553bp
MDGPCSVVHNGGMRGFNSSGSSSVFSSREQAHQQQAVRYGVGVAFAAPAA
PATASSAAWDPNDEPLPDILCPPLRSVSSLVMSLDAEEGGVWTAARNNNN
ANTNTNTNNSSTNKNTSNSNTYGAAKDAAVSGAMGSKTLYMFMSSLPSPP
TPSMDTDDQLTREQSFPPPFRTRLNRDQSFPPMDMLPSSSLNSGWAAVPT
PTSNSNTSGGGSMVGGGGLFSGTGGAPSLSKFLGLGYPAPPLNWGGGPEQ
DDAPPGGQVHRGGGNGGPSLGNEGQHGVFYDPPPPPSHRQRHSSFDKLAE
MIPGIPHWTTPSSPSTSAPPSAGPPAEAAREQLHGDGGAGGGGSNSSGSI
KAEAADALTPASSPSRATPPTRGRQQHPTSSRPEKMKRQHQRRADSPPRA
RWPPSATSPPPAAAAVAERAITKRPQPSGTGKRSAEPPLSCGPVRPGGGP
VDLAQQERRLVKIQRYLYKRSRRKFAKFTRDASPSRSRPKAAAKRPRVKG
KFVKTVPDFVSVNDRHPREDTTGVAAADQQDAASPPSPQQSPAAGGVGVG
VGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain