mRNA_C-linearis_contig11.1349.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1349.1
Unique NamemRNA_C-linearis_contig11.1349.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1349.1 vs. uniprot
Match: D7FM63_ECTSI (CCT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM63_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 5.470e-68
Identity = 237/531 (44.63%), Postives = 266/531 (50.09%), Query Frame = 3 
Query:  534 AWDPNDEPLPDILCPPLRSVSSLVMSLDAEEGGVWTAARNNNNANTNXXXXXXXXXXXXXXXXTYGAAKDAAVSGAMGSKTLYMFMSSLPSPPTPSMDTDDQLTREQSFPPPF-RTRLNXXXXXXPMDMLPSSSLNSGWAAVPTP-TSNSNTSGGGSMVGGGGLFSGTGGAPSLS--KFLGLGYPAPPL-------------NWGGGPEQDDAPXXXQVHRGXGNGGPSLGNEGQHGVFYDPXXXX----SHRQRHSSFDKLAEMIPGIPHWTTPSSPSTSAPXXXXXXAEAARE-QLHG---DGXXXXXXXXXXGSIKAEAADALTPASSPSR----ATPPTRGRQQHPTSSRPEKMKRQHQRRADSPPRARWXXXXXXXXXXAAAVAERAITKRPQPSGTGKRSAEPPLSCGPVRPGGGPVDLAQQERRLVKIQRYLYKRSRRKFAKFTRDASPSRSRPKAAAKRPRVKGKFVKTVPDFVSVNDRHP--REDTTGVAAADQQDA---------ASPPSPQQSPAAGGVG 2006
            AWD NDEPLPD + P LRSVSSLVMS+D E+G   T+      A  N                +           A+GS  L M M+  P PPT  MD++  L+REQS+PPPF R R        P   +  S      A+  TP +S S T                   PSLS  KF GLG+P                  W    E D A    + H G G GG SL +E  H  ++          S R R  SFDKLA MIPGIPHW  P SPS+S  XXXXXX       +LH     GXXXXXXXXXX           TP  SPS     A P +RGRQ   T +  +  K  H   ADSP  A W         X AAVA     K+   SG GKR+ E PLSCGP R GGGPVDLA+QERR VKIQRYLYKRSRRKFAK TRDASPSRSRPKAA  RPR+KGKFVKT PDFVSVN   P  RED  G   A  +           A  P PQ   AAGGVG
Sbjct:    2 AWDDNDEPLPD-MAPILRSVSSLVMSMDPEDGMSATSPCVTATAGRNRGTNNMVGTCNSRSSSSAAERAKTQNGAALGSNALDMLMA--PLPPT-LMDSNTCLSREQSYPPPFGRPRFGRDPSFPPPVQVGRSIA----ASTETPCSSGSGTXXXXXXXXXXXXXXXXXXXPSLSSGKFQGLGFPGTGXXXXXXRLGVKQERQW----ENDHA--GGRDHGGGGTGGRSLSDEDHHTDYHPDDIIGGILPSSRPRRPSFDKLAAMIPGIPHWPVPPSPSSSXXXXXXXXXXXESSGELHAPAASGXXXXXXXXXXXXXXXXPLRTTTPRLSPSAXXXXAAPSSRGRQPKMTRADKKPKKHHHNPTADSPTTAPWTAPTLPSPAXXAAVAASIPPKKTPSSGNGKRALETPLSCGPARSGGGPVDLAKQERRRVKIQRYLYKRSRRKFAKSTRDASPSRSRPKAALLRPRIKGKFVKTTPDFVSVNAGGPPQREDGDGDGLAQWEPTDMLAGNINNALSPKPQV--AAGGVG 516
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM63_ECTSI5.470e-6844.63CCT domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3002842..3004862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2023
Cds size1659
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927462.4221437-UTR-C-linearis_contig11:3002841..30032031622927462.4221437-UTR-C-linearis_contig11:3002841..3003203Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3002842..3003203 +
1690879714.8275363-UTR-C-linearis_contig11:3002841..30032031690879714.8275363-UTR-C-linearis_contig11:3002841..3003203Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3002842..3003203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927462.4374402-CDS-C-linearis_contig11:3003203..30048621622927462.4374402-CDS-C-linearis_contig11:3003203..3004862Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3003204..3004862 +
1690879714.836096-CDS-C-linearis_contig11:3003203..30048621690879714.836096-CDS-C-linearis_contig11:3003203..3004862Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3003204..3004862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1349.1prot_C-linearis_contig11.1349.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3003204..3004862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1349.1

>prot_C-linearis_contig11.1349.1 ID=prot_C-linearis_contig11.1349.1|Name=mRNA_C-linearis_contig11.1349.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=553bp
MDGPCSVVHNGGMRGFNSSGSSSVFSSREQAHQQQAVRYGVGVAFAAPAA
PATASSAAWDPNDEPLPDILCPPLRSVSSLVMSLDAEEGGVWTAARNNNN
ANTNTNTNNSSTNKNTSNSNTYGAAKDAAVSGAMGSKTLYMFMSSLPSPP
TPSMDTDDQLTREQSFPPPFRTRLNRDQSFPPMDMLPSSSLNSGWAAVPT
PTSNSNTSGGGSMVGGGGLFSGTGGAPSLSKFLGLGYPAPPLNWGGGPEQ
DDAPPGGQVHRGGGNGGPSLGNEGQHGVFYDPPPPPSHRQRHSSFDKLAE
MIPGIPHWTTPSSPSTSAPPSAGPPAEAAREQLHGDGGAGGGGSNSSGSI
KAEAADALTPASSPSRATPPTRGRQQHPTSSRPEKMKRQHQRRADSPPRA
RWPPSATSPPPAAAAVAERAITKRPQPSGTGKRSAEPPLSCGPVRPGGGP
VDLAQQERRLVKIQRYLYKRSRRKFAKFTRDASPSRSRPKAAAKRPRVKG
KFVKTVPDFVSVNDRHPREDTTGVAAADQQDAASPPSPQQSPAAGGVGVG
VGA
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mRNA from alignment at C-linearis_contig11:3002842..3004862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1349.1 ID=mRNA_C-linearis_contig11.1349.1|Name=mRNA_C-linearis_contig11.1349.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2021bp|location=Sequence derived from alignment at C-linearis_contig11:3002842..3004862+ (Chordaria linearis ClinC8C monoicous)
CCACTTCCCACACTCTGTGTCTGTGTTTTGTCCGAAAACCTCCCTTCCTT
GCCTTCCCGCTGGTGTGCGCCGTGTGCAACAGAAAGGAAGATCTTCGCAG
GAGGAGGAGGGGACGTCACGACGCCTTGTTGGAGACCGCCTTTCCGTGCC
TCGTCTTTCTTCGCTGCTGGCGCCTACAGCGGTGGGGGTGGTGTGGTGAG
AGAAGGCGAGAGATATCGCATAGACTTCCTACAAGTTTCGATCGGAAGTG
CACACACCCGCTTCTTCGGCGGTGTGGCCGACAAACTGCAAATTAGCGAC
ACCAGCATTCGACTCGAGTTGCGCATATTTCACTACAGCCTCGCCCACCA
AGTACCACCAGCATGGACGGCCCCTGCTCTGTTGTCCACAACGGCGGCAT
GCGCGGCTTCAACAGCAGCGGCAGCAGCAGCGTGTTCTCCAGCCGAGAGC
AAGCGCACCAACAGCAGGCGGTGCGTTACGGCGTGGGAGTTGCCTTCGCC
GCTCCTGCAGCTCCTGCGACAGCCAGCTCCGCCGCCTGGGACCCCAACGA
CGAGCCCCTGCCGGACATCCTGTGCCCTCCCCTGAGGAGCGTCTCCAGCC
TCGTCATGTCCCTCGACGCCGAGGAGGGCGGCGTGTGGACCGCAGCGCGC
AACAACAACAACGCCAACACCAACACCAACACCAACAACAGCAGCACCAA
CAAAAACACCAGCAACAGCAACACCTACGGCGCAGCCAAAGACGCCGCTG
TCTCCGGCGCGATGGGCTCCAAGACGTTGTACATGTTCATGTCGTCGCTG
CCGAGTCCTCCCACACCATCCATGGACACCGACGACCAGCTCACCCGGGA
GCAGTCCTTCCCGCCCCCCTTCCGCACGCGCCTCAACCGCGATCAATCCT
TCCCCCCCATGGACATGCTCCCCTCGTCTTCTCTCAACTCGGGGTGGGCT
GCCGTCCCGACCCCGACCTCCAACAGCAACACCAGCGGCGGCGGAAGCAT
GGTTGGTGGGGGCGGCTTGTTCTCCGGCACGGGCGGGGCGCCCAGCTTGT
CCAAGTTCTTGGGCTTGGGCTACCCAGCCCCCCCCCTGAATTGGGGTGGC
GGCCCCGAGCAGGATGATGCCCCGCCGGGAGGGCAAGTCCACCGCGGCGG
CGGCAACGGAGGTCCCAGCCTGGGGAACGAAGGCCAGCACGGCGTGTTCT
ACGACCCCCCGCCTCCGCCATCTCACCGCCAGCGCCACTCGAGCTTCGAC
AAGCTCGCCGAGATGATCCCCGGGATACCGCACTGGACGACTCCGTCTTC
GCCCTCGACATCTGCGCCGCCGTCAGCAGGACCACCAGCGGAAGCGGCCA
GGGAGCAGCTGCACGGCGACGGCGGCGCGGGCGGCGGCGGCAGCAACAGC
AGCGGCAGCATCAAGGCCGAAGCTGCCGACGCGCTCACACCGGCGTCGTC
GCCCTCGCGCGCGACACCGCCGACTCGGGGACGGCAGCAGCACCCGACCA
GCTCCCGGCCCGAGAAGATGAAGAGGCAGCACCAACGCCGCGCCGACTCT
CCCCCCCGCGCCCGCTGGCCTCCCTCGGCGACCTCGCCGCCACCGGCGGC
GGCAGCTGTGGCGGAACGCGCCATCACAAAGAGGCCGCAGCCCTCGGGCA
CCGGAAAGCGCTCCGCGGAGCCGCCCCTGTCCTGTGGGCCGGTCCGGCCG
GGCGGCGGGCCCGTCGACCTCGCCCAGCAGGAGCGGCGCCTGGTCAAGAT
CCAGCGGTACTTGTACAAGCGCTCGCGCCGGAAGTTCGCCAAGTTCACGC
GGGACGCGTCGCCGTCCCGCTCCCGCCCCAAGGCGGCGGCGAAGCGGCCC
CGCGTCAAGGGGAAGTTCGTCAAGACGGTGCCCGACTTCGTCTCCGTCAA
CGATCGCCATCCGCGGGAGGACACCACGGGCGTGGCCGCCGCCGACCAGC
AGGACGCGGCCTCGCCGCCGTCGCCGCAGCAGTCTCCGGCAGCGGGGGGA
GTCGGAGTCGGAGTTGGGGCT
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Coding sequence (CDS) from alignment at C-linearis_contig11:3002842..3004862+

>mRNA_C-linearis_contig11.1349.1 ID=mRNA_C-linearis_contig11.1349.1|Name=mRNA_C-linearis_contig11.1349.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3318bp|location=Sequence derived from alignment at C-linearis_contig11:3002842..3004862+ (Chordaria linearis ClinC8C monoicous)
ATGGACGGCCCCTGCTCTGTTGTCCACAACGGCGGCATGCGCGGCTTCAA
CAGCAGCGGCAGCAGCAGCGTGTTCTCCAGCCGAGAGCAAGCGCACCAAC
AGCAGGCGGTGCGTTACGGCGTGGGAGTTGCCTTCGCCGCTCCTGCAGCT
CCTGCGACAGCCAGCTCCGCCGCCTGGGACCCCAACGACGAGCCCCTGCC
GGACATCCTGTGCCCTCCCCTGAGGAGCGTCTCCAGCCTCGTCATGTCCC
TCGACGCCGAGGAGGGCGGCGTGTGGACCGCAGCGCGCAACAACAACAAC
GCCAACACCAACACCAACACCAACAACAGCAGCACCAACAAAAACACCAG
CAACAGCAACACCTACGGCGCAGCCAAAGACGCCGCTGTCTCCGGCGCGA
TGGGCTCCAAGACGTTGTACATGTTCATGTCGTCGCTGCCGAGTCCTCCC
ACACCATCCATGGACACCGACGACCAGCTCACCCGGGAGCAGTCCTTCCC
GCCCCCCTTCCGCACGCGCCTCAACCGCGATCAATCCTTCCCCCCCATGG
ACATGCTCCCCTCGTCTTCTCTCAACTCGGGGTGGGCTGCCGTCCCGACC
CCGACCTCCAACAGCAACACCAGCGGCGGCGGAAGCATGGTTGGTGGGGG
CGGCTTGTTCTCCGGCACGGGCGGGGCGCCCAGCTTGTCCAAGTTCTTGG
GCTTGGGCTACCCAGCCCCCCCCCTGAATTGGGGTGGCGGCCCCGAGCAG
GATGATGCCCCGCCGGGAGGGCAAGTCCACCGCGGCGGCGGCAACGGAGG
TCCCAGCCTGGGGAACGAAGGCCAGCACGGCGTGTTCTACGACCCCCCGC
CTCCGCCATCTCACCGCCAGCGCCACTCGAGCTTCGACAAGCTCGCCGAG
ATGATCCCCGGGATACCGCACTGGACGACTCCGTCTTCGCCCTCGACATC
TGCGCCGCCGTCAGCAGGACCACCAGCGGAAGCGGCCAGGGAGCAGCTGC
ACGGCGACGGCGGCGCGGGCGGCGGCGGCAGCAACAGCAGCGGCAGCATC
AAGGCCGAAGCTGCCGACGCGCTCACACCGGCGTCGTCGCCCTCGCGCGC
GACACCGCCGACTCGGGGACGGCAGCAGCACCCGACCAGCTCCCGGCCCG
AGAAGATGAAGAGGCAGCACCAACGCCGCGCCGACTCTCCCCCCCGCGCC
CGCTGGCCTCCCTCGGCGACCTCGCCGCCACCGGCGGCGGCAGCTGTGGC
GGAACGCGCCATCACAAAGAGGCCGCAGCCCTCGGGCACCGGAAAGCGCT
CCGCGGAGCCGCCCCTGTCCTGTGGGCCGGTCCGGCCGGGCGGCGGGCCC
GTCGACCTCGCCCAGCAGGAGCGGCGCCTGGTCAAGATCCAGCGGTACTT
GTACAAGCGCTCGCGCCGGAAGTTCGCCAAGTTCACGCGGGACGCGTCGC
CGTCCCGCTCCCGCCCCAAGGCGGCGGCGAAGCGGCCCCGCGTCAAGGGG
AAGTTCGTCAAGACGGTGCCCGACTTCGTCTCCGTCAACGATCGCCATCC
GCGGGAGGACACCACGGGCGTGGCCGCCGCCGACCAGCAGGACGCGGCCT
CGCCGCCGTCGCCGCAGCAGTCTCCGGCAGCGGGGGGAGTCGGAGTCGGA
GTTGGGGCTATGGACGGCCCCTGCTCTGTTGTCCACAACGGCGGCATGCG
CGGCTTCAACAGCAGCGGCAGCAGCAGCGTGTTCTCCAGCCGAGAGCAAG
CGCACCAACAGCAGGCGGTGCGTTACGGCGTGGGAGTTGCCTTCGCCGCT
CCTGCAGCTCCTGCGACAGCCAGCTCCGCCGCCTGGGACCCCAACGACGA
GCCCCTGCCGGACATCCTGTGCCCTCCCCTGAGGAGCGTCTCCAGCCTCG
TCATGTCCCTCGACGCCGAGGAGGGCGGCGTGTGGACCGCAGCGCGCAAC
AACAACAACGCCAACACCAACACCAACACCAACAACAGCAGCACCAACAA
AAACACCAGCAACAGCAACACCTACGGCGCAGCCAAAGACGCCGCTGTCT
CCGGCGCGATGGGCTCCAAGACGTTGTACATGTTCATGTCGTCGCTGCCG
AGTCCTCCCACACCATCCATGGACACCGACGACCAGCTCACCCGGGAGCA
GTCCTTCCCGCCCCCCTTCCGCACGCGCCTCAACCGCGATCAATCCTTCC
CCCCCATGGACATGCTCCCCTCGTCTTCTCTCAACTCGGGGTGGGCTGCC
GTCCCGACCCCGACCTCCAACAGCAACACCAGCGGCGGCGGAAGCATGGT
TGGTGGGGGCGGCTTGTTCTCCGGCACGGGCGGGGCGCCCAGCTTGTCCA
AGTTCTTGGGCTTGGGCTACCCAGCCCCCCCCCTGAATTGGGGTGGCGGC
CCCGAGCAGGATGATGCCCCGCCGGGAGGGCAAGTCCACCGCGGCGGCGG
CAACGGAGGTCCCAGCCTGGGGAACGAAGGCCAGCACGGCGTGTTCTACG
ACCCCCCGCCTCCGCCATCTCACCGCCAGCGCCACTCGAGCTTCGACAAG
CTCGCCGAGATGATCCCCGGGATACCGCACTGGACGACTCCGTCTTCGCC
CTCGACATCTGCGCCGCCGTCAGCAGGACCACCAGCGGAAGCGGCCAGGG
AGCAGCTGCACGGCGACGGCGGCGCGGGCGGCGGCGGCAGCAACAGCAGC
GGCAGCATCAAGGCCGAAGCTGCCGACGCGCTCACACCGGCGTCGTCGCC
CTCGCGCGCGACACCGCCGACTCGGGGACGGCAGCAGCACCCGACCAGCT
CCCGGCCCGAGAAGATGAAGAGGCAGCACCAACGCCGCGCCGACTCTCCC
CCCCGCGCCCGCTGGCCTCCCTCGGCGACCTCGCCGCCACCGGCGGCGGC
AGCTGTGGCGGAACGCGCCATCACAAAGAGGCCGCAGCCCTCGGGCACCG
GAAAGCGCTCCGCGGAGCCGCCCCTGTCCTGTGGGCCGGTCCGGCCGGGC
GGCGGGCCCGTCGACCTCGCCCAGCAGGAGCGGCGCCTGGTCAAGATCCA
GCGGTACTTGTACAAGCGCTCGCGCCGGAAGTTCGCCAAGTTCACGCGGG
ACGCGTCGCCGTCCCGCTCCCGCCCCAAGGCGGCGGCGAAGCGGCCCCGC
GTCAAGGGGAAGTTCGTCAAGACGGTGCCCGACTTCGTCTCCGTCAACGA
TCGCCATCCGCGGGAGGACACCACGGGCGTGGCCGCCGCCGACCAGCAGG
ACGCGGCCTCGCCGCCGTCGCCGCAGCAGTCTCCGGCAGCGGGGGGAGTC
GGAGTCGGAGTTGGGGCT
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