prot_C-linearis_contig11.1306.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1306.1
Unique Nameprot_C-linearis_contig11.1306.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length355
Homology
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BLAST of mRNA_C-linearis_contig11.1306.1 vs. uniprot
Match: A0A6H5JSK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.200e-32
Identity = 101/228 (44.30%), Postives = 120/228 (52.63%), Query Frame = 0 
Query:    9 LEWIAKFPMFSWMRPKPTRD---DHGHSDVPDLWCGLDVKGKPNQQQNQQRVQPKPQRSSPPKLCTKEESVL-HTAPASTCDS--SAASWSEMA--VGSSDSSVGATHDMVNFHRLSKHVDCGGPRRSPPPLAL----------AFDPEXXXXXAATP---VNIPWRLVDPDSASNPMQEALSHSLAQMELRMSGRHTTKNAPTASSTAARQHHRRALSDLPIGRGGA 215
            LE IAKFP+F WMRPKP R+     GH       CG    G  +   N       P++   P+L  +E ++L  TAP STC S  SA SWSE    VGSSDSS GA+  M  F RL          +S P L L            +       A TP   ++IPWRL+DPDSA+ PMQEAL+HSL QMELRMSGRHTTKN+         Q HRR  S LP+ R  A
Sbjct:    9 LETIAKFPLFDWMRPKPRREVAPGDGHH------CGSSDFGSSSSNNNAAVSTCSPRKLRTPRLSAEESTLLSRTAPISTCTSNISAVSWSEQTTVVGSSDSSTGAS-GMAAFPRLG--------HKSSPELKLDIVAGDAPAAVLETRLTVAPAPTPAPPMDIPWRLLDPDSATTPMQEALNHSLGQMELRMSGRHTTKNSTACRRKDYSQFHRRTQSALPVSRADA 221
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSK6_9PHAE3.200e-3244.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2569383..2572460 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1306.1mRNA_C-linearis_contig11.1306.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 2568733..2572525 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1306.1 ID=prot_C-linearis_contig11.1306.1|Name=mRNA_C-linearis_contig11.1306.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=355bp
MRNSDGSPLEWIAKFPMFSWMRPKPTRDDHGHSDVPDLWCGLDVKGKPNQ
QQNQQRVQPKPQRSSPPKLCTKEESVLHTAPASTCDSSAASWSEMAVGSS
DSSVGATHDMVNFHRLSKHVDCGGPRRSPPPLALAFDPEPAPAPAATPVN
IPWRLVDPDSASNPMQEALSHSLAQMELRMSGRHTTKNAPTASSTAARQH
HRRALSDLPIGRGGAAKGGGGHARAAAFAEGRGGGGAEAAPTSFWKQTPP
AAATMTSGSFDDDDDDFLNHEGLSPRERGSCGRRHQGAFEGCFPEGSPSA
AAAAVAKDGPTSNSIQEEDGVDNNDVPLSSGRGNLADEEEDDADSDMMFD
FDDL*
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