mRNA_C-linearis_contig11.1306.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1306.1
Unique NamemRNA_C-linearis_contig11.1306.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1306.1 vs. uniprot
Match: A0A6H5JSK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.570e-30
Identity = 101/228 (44.30%), Postives = 120/228 (52.63%), Query Frame = 3 
Query:   90 LEWIAKFPMFSWMRPKPTRD---DHGHSDVPDLWCGLDVKGKPNQQQNQQRVQPKPQRSSPPKLCTKEESVL-HTAPASTCDS--SAASWSEMA--VGSSDSSVGATHDMVNFHRLSKHVDCGGPRRSPPPLAL----------AFDPEXXXXXAATP---VNIPWRLVDPDSASNPMQEALSHSLAQMELRMSGRHTTKNAPTASSTAARQHHRRALSDLPIGRGGA 710
            LE IAKFP+F WMRPKP R+     GH       CG    G  +   N       P++   P+L  +E ++L  TAP STC S  SA SWSE    VGSSDSS GA+  M  F RL          +S P L L            +       A TP   ++IPWRL+DPDSA+ PMQEAL+HSL QMELRMSGRHTTKN+         Q HRR  S LP+ R  A
Sbjct:    9 LETIAKFPLFDWMRPKPRREVAPGDGHH------CGSSDFGSSSSNNNAAVSTCSPRKLRTPRLSAEESTLLSRTAPISTCTSNISAVSWSEQTTVVGSSDSSTGAS-GMAAFPRLG--------HKSSPELKLDIVAGDAPAAVLETRLTVAPAPTPAPPMDIPWRLLDPDSATTPMQEALNHSLGQMELRMSGRHTTKNSTACRRKDYSQFHRRTQSALPVSRADA 221
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSK6_9PHAE1.570e-3044.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2568733..2572525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004600.1
Exons2
Model size1780
Cds size1065
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1306.1prot_C-linearis_contig11.1306.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2569383..2572460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927456.8306532-UTR-C-linearis_contig11:2568732..25693821622927456.8306532-UTR-C-linearis_contig11:2568732..2569382Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2568733..2569382 -
1690879710.856474-UTR-C-linearis_contig11:2568732..25693821690879710.856474-UTR-C-linearis_contig11:2568732..2569382Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2568733..2569382 -
1622927456.8648098-UTR-C-linearis_contig11:2572460..25725251622927456.8648098-UTR-C-linearis_contig11:2572460..2572525Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2572461..2572525 -
1690879710.892825-UTR-C-linearis_contig11:2572460..25725251690879710.892825-UTR-C-linearis_contig11:2572460..2572525Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2572461..2572525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927456.842939-CDS-C-linearis_contig11:2569382..25699461622927456.842939-CDS-C-linearis_contig11:2569382..2569946Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2569383..2569946 -
1690879710.8669808-CDS-C-linearis_contig11:2569382..25699461690879710.8669808-CDS-C-linearis_contig11:2569382..2569946Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2569383..2569946 -
1622927456.8552248-CDS-C-linearis_contig11:2571959..25724601622927456.8552248-CDS-C-linearis_contig11:2571959..2572460Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2571960..2572460 -
1690879710.878844-CDS-C-linearis_contig11:2571959..25724601690879710.878844-CDS-C-linearis_contig11:2571959..2572460Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2571960..2572460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1306.1

>prot_C-linearis_contig11.1306.1 ID=prot_C-linearis_contig11.1306.1|Name=mRNA_C-linearis_contig11.1306.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=355bp
MRNSDGSPLEWIAKFPMFSWMRPKPTRDDHGHSDVPDLWCGLDVKGKPNQ
QQNQQRVQPKPQRSSPPKLCTKEESVLHTAPASTCDSSAASWSEMAVGSS
DSSVGATHDMVNFHRLSKHVDCGGPRRSPPPLALAFDPEPAPAPAATPVN
IPWRLVDPDSASNPMQEALSHSLAQMELRMSGRHTTKNAPTASSTAARQH
HRRALSDLPIGRGGAAKGGGGHARAAAFAEGRGGGGAEAAPTSFWKQTPP
AAATMTSGSFDDDDDDFLNHEGLSPRERGSCGRRHQGAFEGCFPEGSPSA
AAAAVAKDGPTSNSIQEEDGVDNNDVPLSSGRGNLADEEEDDADSDMMFD
FDDL*
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mRNA from alignment at C-linearis_contig11:2568733..2572525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1306.1 ID=mRNA_C-linearis_contig11.1306.1|Name=mRNA_C-linearis_contig11.1306.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3793bp|location=Sequence derived from alignment at C-linearis_contig11:2568733..2572525- (Chordaria linearis ClinC8C monoicous)
CAAACACACACCCACTCTGCACCTTCTCCCTACATATCACATGCGTCCCT
TGCCCGGCAGTCAACATGCGGAATTCAGATGGATCTCCACTCGAGTGGAT
CGCAAAGTTCCCCATGTTCAGTTGGATGCGACCCAAGCCAACGAGAGACG
ACCACGGGCACTCCGATGTTCCTGACTTGTGGTGTGGTCTTGACGTGAAG
GGAAAACCCAATCAACAGCAGAATCAGCAGCGGGTGCAACCGAAGCCGCA
ACGCAGCTCACCCCCGAAGCTGTGCACGAAGGAGGAGAGCGTGCTCCACA
CGGCCCCGGCGAGCACCTGCGACTCCTCGGCGGCGTCGTGGTCAGAGATG
GCGGTGGGCAGCAGCGATTCTTCGGTCGGAGCAACACACGACATGGTGAA
TTTTCATCGTCTCAGCAAGCACGTTGACTGCGGCGGACCGAGACGTTCTC
CGCCCCCCCTAGCGCTCGCGTTTGACCCTGAACCAGCCCCGGCCCCCGCT
GCGACCCCGGTGAACATCCCGTGGAGGCTGGTGGACCCCGACTCGGCCTC
CAACCCGATGCAGGAGGTGAGTCGCTTGCCTCTTTGGCTTTCTTTGGGCA
CAAACAAAATTTAATTGTCTGATGCACATCGCAGGAATTTTACGTTGGAT
GTGCTATATGTTCGATCTGGAAGCGAGAGCCGTTTGCCCCACCTGGCTGG
GTGTTGTACTGCACGTATTTCCATATGTGCGTTGGAATGATGTCATGACT
CTGCTTGTTTCTCCCTCTGCCCCCCCCCCCCTCCCCTCGCCGCCAGCTGG
CGCTTTGTTCGTTCAACATGCGTTCCATGACCCCACCTCATCGCGTATCA
TTTCACCAAACCTCTATCTGCACCCCTCGGCGCTTTGGCCGAGCGTGATT
TCAACGGGTGGGAGGCTGTATTGTTTTTGGTTCACCCGTTACCCGTTACG
ATGCCACAACTTTTTAGAGCGAGTTTTTACGTTTTTACGTTTTGATGTAC
TCGAAGGGTGAACTATGGTTATTTGTTATTTGTTACTCCTATTTGTTATT
TCCCAGCTCGCCGATAGCGCCCGTTTTTATTGCCGACAAGTGTTTCGTTG
CCGCCCTGCGGTAATCTGTTGGCCGTGGTGCGCGCGGTAGCCCCCCTCCC
TCGCGAGGCCGTAGACAGCAGGACGGGTCATGTTTTTTATTTCTTTTATT
TGTCTTTACATTTATTTCCAGAGTTCGCGAGGGGCGGGGCGGGGCGGGCC
TTGCCGCGCGGGGCATCTTGCCATAACGTCTGAACCGTGGTCACTCTGAA
TGCTCCTCTCCCTGAGGCCCCGATCCGCCTTCTGCGGTGCTTGCCTGGTG
TTTGTGAACGCGAGAGAGTTTCAGCTGTCTCTCCCTCAAGTGTCCTCACG
AACTAAGCGCTTCCCACTGACAGAAACGAAAGCGAGAGAAAAAACTCACT
TTGCGTGAGGACAACTCGCCTGCGCCGGAATTCGAACCCGTTACCCTGCA
TGCTTGATCTTACATACTTGTGAAACCATATAATAGACCGATGCTCGAGA
TTTTGTCGGTGGCGAGCATTTTCGACCACTCAAAAGAGGCAATCGAGGGA
CCCCAAAGCGGTTGGCTCGTTGGCCCTTCGACGGCCAGTGGCTTGCCACA
ACGAGACCCCCTTTTTCAGGCGTTTGAGCCAGCCTACCTTTCGGCCTTGA
TCTACCCAGCCCGTGATCGACGCTTTTATACACGGTGATTTTCATCCAGG
TATCAGATGTTCTGGCAAGATGCCCCGCGTGGCAGGGCGTCCGTGGTAAG
CCGCCTACGAGAAATCTGGAAATAAATTTTCAGACATAATGGATGGAAAA
ACATGATCGAGTTGAACGGAATTATTTCATTGCATGTTGTCAAAGAACCA
GGACTGGTCTACGCATGTTCGACGGCAGCAGTCTACCAGCGACACTTGCA
TGTGTCCCACACGCCCGTTCTCTTTCATCCATTTTTATTTATTTATTTTT
TTCTTGACATACAACCAGAGCTCACAGCATTTCTGCCGGATAGGGGCTCT
AGCCCGTTGTCACACAGAAGGGTCCCTCTCCCTGAGGCCCCCCACCCTCC
CCTCCTGCGGTGCTTCGCCTTTGATTTTTTATGCGAGGAGAGCGCGGCAA
TCTGTTCCCTCCGTGTACACGCAACTATTATAGCGCTTTCCACAACCAGG
GACGTATTTGAGAGAAAAACTCACGGTTGTAGATAATAGTTAGAAAATAT
CGCATACGCCGGGATTCGAACCCGTGACCTGGCCGCTAGAAGGTGTGCGG
TTTACCAACTAGACCACCCGGGCGACCTCCAAGTACCATAATATTTCAAT
ATTTAATATTTCCGCCCGATGGTTCCGTGCGCACTTGGCCGTTGAGGCCT
TGGGCCAAACACGCGAGGTCTTGTTCACCCCGTCAAATGACTCTCTAAAT
TGTTGCCCCTTAAAATAAGGCACCTCGCGCATGTGGTATGCATAGCCATG
TTCGTATCTTCTCAAACGCGCAAGCCCTTCCCCCCACGCCCCAAACCCCG
CTTGTCCGTCCATCTCTCGACACAAACAGGCGCTCTCCCACTCCCTGGCC
CAGATGGAGCTGCGCATGTCTGGCAGGCACACGACAAAGAACGCCCCTAC
CGCGAGCAGCACCGCCGCCCGCCAGCACCACCGGCGCGCGCTTTCGGATC
TTCCCATTGGACGGGGCGGTGCGGCGAAGGGCGGTGGCGGCCACGCGCGC
GCGGCGGCGTTCGCGGAGGGAAGAGGAGGCGGCGGAGCGGAGGCGGCCCC
GACGTCGTTCTGGAAGCAGACCCCGCCGGCGGCGGCGACGATGACCTCGG
GCTCGTTCGACGACGACGACGACGACTTCCTCAACCACGAGGGGCTAAGC
CCTCGCGAACGCGGGTCCTGCGGGAGGCGACATCAGGGGGCCTTTGAGGG
GTGCTTCCCGGAGGGTTCGCCCAGCGCGGCGGCGGCGGCGGTGGCGAAGG
ACGGTCCCACGTCGAATTCAATCCAGGAAGAGGATGGGGTCGACAATAAC
GACGTTCCTCTTTCCTCTGGCCGTGGCAATCTTGCCGACGAAGAGGAGGA
CGATGCGGATAGTGATATGATGTTTGATTTCGATGACCTGTGACAGATGT
ATGTTGAGCCAGCCCCGCCCCCGGGGGGGGGTGGGGGTAGGGGTGTTCAC
ACTGGGCAGGATTTGAGTCTCAAAAAGGCTTGGATGAAACTCTGCCTTGT
TCTTTTGGACGGGGCGCGGTTCGGGATCAAAGCTTTCGTTGCCGAGGTTG
TGATGGCGAAGCGTGGGGTAGTAGGAATAGCGCTAGATGCGCGCGTGTAT
TTGTCACATGTGTCGTGTGTTGTGTAGGACGGGGATGTTGTTGGGGATGA
TAATGGAAGTCCAACTTTGTGTCACCGTGTGTTGGTTGCCGAGTGTCGCT
CGGGAGGGGGTTGAGCGGAGCAGTACCTTGTGTGTCGGATGGTGGTGCTG
ATAGTCGCACCGTTCGCCCCTGTTGTGTGTGTGCGTTTGTTGTGTGGATT
TGGATTTGGATCTCTGCGTTAGGCAAAGCAGGCGAGAGACAAAACGAAAA
GGGACACAACGTAAGATGGGCTTGCGATAACGTAAGTTGTTTCTTGTTGC
CCGCATGGCATGCAGCTGTCCTCGTCTCGGTACTCAAGTATGATACCTCT
TAGGTTCTCCATACGAGCGACTCGTGCGCCTTCTCGTTGACCGAGTGTGT
AAACTAAACGCGCAAGTGCTGTGCGTCTTCTTTTCCTTTTTCG
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Coding sequence (CDS) from alignment at C-linearis_contig11:2568733..2572525-

>mRNA_C-linearis_contig11.1306.1 ID=mRNA_C-linearis_contig11.1306.1|Name=mRNA_C-linearis_contig11.1306.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2130bp|location=Sequence derived from alignment at C-linearis_contig11:2568733..2572525- (Chordaria linearis ClinC8C monoicous)
ATGCGGAATTCAGATGGATCTCCACTCGAGTGGATCGCAAAGTTCCCCAT
GTTCAGTTGGATGCGACCCAAGCCAACGAGAGACGACCACGGGCACTCCG
ATGTTCCTGACTTGTGGTGTGGTCTTGACGTGAAGGGAAAACCCAATCAA
CAGCAGAATCAGCAGCGGGTGCAACCGAAGCCGCAACGCAGCTCACCCCC
GAAGCTGTGCACGAAGGAGGAGAGCGTGCTCCACACGGCCCCGGCGAGCA
CCTGCGACTCCTCGGCGGCGTCGTGGTCAGAGATGGCGGTGGGCAGCAGC
GATTCTTCGGTCGGAGCAACACACGACATGGTGAATTTTCATCGTCTCAG
CAAGCACGTTGACTGCGGCGGACCGAGACGTTCTCCGCCCCCCCTAGCGC
TCGCGTTTGACCCTGAACCAGCCCCGGCCCCCGCTGCGACCCCGGTGAAC
ATCCCGTGGAGGCTGGTGGACCCCGACTCGGCCTCCAACCCGATGCAGGA
GATGCGGAATTCAGATGGATCTCCACTCGAGTGGATCGCAAAGTTCCCCA
TGTTCAGTTGGATGCGACCCAAGCCAACGAGAGACGACCACGGGCACTCC
GATGTTCCTGACTTGTGGTGTGGTCTTGACGTGAAGGGAAAACCCAATCA
ACAGCAGAATCAGCAGCGGGTGCAACCGAAGCCGCAACGCAGCTCACCCC
CGAAGCTGTGCACGAAGGAGGAGAGCGTGCTCCACACGGCCCCGGCGAGC
ACCTGCGACTCCTCGGCGGCGTCGTGGTCAGAGATGGCGGTGGGCAGCAG
CGATTCTTCGGTCGGAGCAACACACGACATGGTGAATTTTCATCGTCTCA
GCAAGCACGTTGACTGCGGCGGACCGAGACGTTCTCCGCCCCCCCTAGCG
CTCGCGTTTGACCCTGAACCAGCCCCGGCCCCCGCTGCGACCCCGGTGAA
CATCCCGTGGAGGCTGGTGGACCCCGACTCGGCCTCCAACCCGATGCAGG
AGGCGCTCTCCCACTCCCTGGCCCAGATGGAGCTGCGCATGTCTGGCAGG
CACACGACAAAGAACGCCCCTACCGCGAGCAGCACCGCCGCCCGCCAGCA
CCACCGGCGCGCGCTTTCGGATCTTCCCATTGGACGGGGCGGTGCGGCGA
AGGGCGGTGGCGGCCACGCGCGCGCGGCGGCGTTCGCGGAGGGAAGAGGA
GGCGGCGGAGCGGAGGCGGCCCCGACGTCGTTCTGGAAGCAGACCCCGCC
GGCGGCGGCGACGATGACCTCGGGCTCGTTCGACGACGACGACGACGACT
TCCTCAACCACGAGGGGCTAAGCCCTCGCGAACGCGGGTCCTGCGGGAGG
CGACATCAGGGGGCCTTTGAGGGGTGCTTCCCGGAGGGTTCGCCCAGCGC
GGCGGCGGCGGCGGTGGCGAAGGACGGTCCCACGTCGAATTCAATCCAGG
AAGAGGATGGGGTCGACAATAACGACGTTCCTCTTTCCTCTGGCCGTGGC
AATCTTGCCGACGAAGAGGAGGACGATGCGGATAGTGATATGATGTTTGA
TTTCGATGACCTGTGAGCGCTCTCCCACTCCCTGGCCCAGATGGAGCTGC
GCATGTCTGGCAGGCACACGACAAAGAACGCCCCTACCGCGAGCAGCACC
GCCGCCCGCCAGCACCACCGGCGCGCGCTTTCGGATCTTCCCATTGGACG
GGGCGGTGCGGCGAAGGGCGGTGGCGGCCACGCGCGCGCGGCGGCGTTCG
CGGAGGGAAGAGGAGGCGGCGGAGCGGAGGCGGCCCCGACGTCGTTCTGG
AAGCAGACCCCGCCGGCGGCGGCGACGATGACCTCGGGCTCGTTCGACGA
CGACGACGACGACTTCCTCAACCACGAGGGGCTAAGCCCTCGCGAACGCG
GGTCCTGCGGGAGGCGACATCAGGGGGCCTTTGAGGGGTGCTTCCCGGAG
GGTTCGCCCAGCGCGGCGGCGGCGGCGGTGGCGAAGGACGGTCCCACGTC
GAATTCAATCCAGGAAGAGGATGGGGTCGACAATAACGACGTTCCTCTTT
CCTCTGGCCGTGGCAATCTTGCCGACGAAGAGGAGGACGATGCGGATAGT
GATATGATGTTTGATTTCGATGACCTGTGA
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