prot_C-linearis_contig11.1297.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1297.1
Unique Nameprot_C-linearis_contig11.1297.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length233
Homology
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BLAST of mRNA_C-linearis_contig11.1297.1 vs. uniprot
Match: A0A6H5LJ83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ83_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 2.340e-65
Identity = 113/140 (80.71%), Postives = 121/140 (86.43%), Query Frame = 0 
Query:    1 MQHHARGTRKVKASVLNGILERVSSEEELKYATLGLEIFKTQGIDLPTKTGTLFVKACCKAGSPQTAVDALGGARKYGLDGEGVVSAHRFNYLLSQLYKAGDADGFKRAVEEARSRQQSLNARSHTLIARFEGEERMKGE 140
            MQ+HARGTRKVKASVLN ILERV+S E+LKYA LGL+IFKTQGIDL  KT TLFVKACCKAGSPQ AVD LG A KYGLDGEGVVSAHRFNYLLSQLY AGD++ F RAV EA  RQQSLNARSHTLI++FEGE R K E
Sbjct:   98 MQYHARGTRKVKASVLNRILERVTSAEDLKYACLGLKIFKTQGIDLEKKTATLFVKACCKAGSPQMAVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSETFTRAVSEAEHRQQSLNARSHTLISKFEGEMRAKEE 237
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BLAST of mRNA_C-linearis_contig11.1297.1 vs. uniprot
Match: D7FS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS35_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 4.010e-27
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 0 
Query:   67 AVDALGGARKYGLDGEGVVSAHRFNYLLSQLYKAGDADGFKRAVEEARSRQQSLNARSHTLIARFEGEERMKGE 140
            AVD LG A KYGLDGEGVVSAHRFNYLLSQLY AGD++ F RAV EA  RQQSLNARSHTLIA+FEGE R K E
Sbjct:    2 AVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSETFTRAVSEAEHRQQSLNARSHTLIAKFEGEMRAKEE 75
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1297.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LJ83_9PHAE2.340e-6580.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS35_ECTSI4.010e-2779.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 137..201
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 10..200
e-value: 5.1E-8
score: 34.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2379930..2381573 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1297.1mRNA_C-linearis_contig11.1297.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 2379544..2382249 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1297.1 ID=prot_C-linearis_contig11.1297.1|Name=mRNA_C-linearis_contig11.1297.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MQHHARGTRKVKASVLNGILERVSSEEELKYATLGLEIFKTQGIDLPTKT
GTLFVKACCKAGSPQTAVDALGGARKYGLDGEGVVSAHRFNYLLSQLYKA
GDADGFKRAVEEARSRQQSLNARSHTLIARFEGEERMKGEEAARAKAEEE
RVAREAEEKAKRGEEEAELKAKEAAEEEARLKEEQENKPKEEEAVAEVTR
DTGAPPPEGDAEQGASENAEAAADAQDVEAKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf