mRNA_C-linearis_contig11.1297.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig11.1297.1
Unique Name	mRNA_C-linearis_contig11.1297.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig11.1297.1 vs. uniprot
Match: A0A6H5LJ83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ83_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 6.530e-74
Identity = 131/169 (77.51%), Postives = 141/169 (83.43%), Query Frame = 2

Query:  590 PAEGKIKPDWPVGTPAPGRVQTLGEAFAAMQHHARGTRKVKASVLNGILERVSSEEELKYATLGLEIFKTQGIDLPTKTGTLFVKACCKAGSPQTAVDALGGARKYGLDGEGVVSAHRFNYLLSQLYKAGDADGFKRAVEEARSRQQSLNARSHTLIARFEGEERMKGE 1096
            P+  K K DW  GTP  GR QT+GEAFAAMQ+HARGTRKVKASVLN ILERV+S E+LKYA LGL+IFKTQGIDL  KT TLFVKACCKAGSPQ AVD LG A KYGLDGEGVVSAHRFNYLLSQLY AGD++ F RAV EA  RQQSLNARSHTLI++FEGE R K E
Sbjct:   69 PSGEKRKQDWAPGTPPAGRDQTIGEAFAAMQYHARGTRKVKASVLNRILERVTSAEDLKYACLGLKIFKTQGIDLEKKTATLFVKACCKAGSPQMAVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSETFTRAVSEAEHRQQSLNARSHTLISKFEGEMRAKEE 237

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BLAST of mRNA_C-linearis_contig11.1297.1 vs. uniprot
Match: D7FS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS35_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 7.760e-25
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 2

Query:  875 AVDALGGARKYGLDGEGVVSAHRFNYLLSQLYKAGDADGFKRAVEEARSRQQSLNARSHTLIARFEGEERMKGE 1096
            AVD LG A KYGLDGEGVVSAHRFNYLLSQLY AGD++ F RAV EA  RQQSLNARSHTLIA+FEGE R K E
Sbjct:    2 AVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSETFTRAVSEAEHRQQSLNARSHTLIAKFEGEMRAKEE 75

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig11.1297.1 vs. uniprot

BLAST of mRNA_C-linearis_contig11.1297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5LJ83_9PHAE	6.530e-74	77.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FS35_ECTSI	7.760e-25	79.73	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig11	contig	C-linearis_contig11:2379544..2382249 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-16_004500.1
Exons	4
Model size	1761
Cds size	699
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig11.1297.1	prot_C-linearis_contig11.1297.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig11 2379930..2381573 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927454.5474255-UTR-C-linearis_contig11:2379543..2379929	1622927454.5474255-UTR-C-linearis_contig11:2379543..2379929	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig11 2379544..2379929 -
1690879710.2538898-UTR-C-linearis_contig11:2379543..2379929	1690879710.2538898-UTR-C-linearis_contig11:2379543..2379929	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig11 2379544..2379929 -
1622927454.637435-UTR-C-linearis_contig11:2381573..2382249	1622927454.637435-UTR-C-linearis_contig11:2381573..2382249	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig11 2381574..2382249 -
1690879710.3045924-UTR-C-linearis_contig11:2381573..2382249	1690879710.3045924-UTR-C-linearis_contig11:2381573..2382249	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig11 2381574..2382249 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927454.559348-CDS-C-linearis_contig11:2379929..2380315	1622927454.559348-CDS-C-linearis_contig11:2379929..2380315	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2379930..2380315 -
1690879710.2695847-CDS-C-linearis_contig11:2379929..2380315	1690879710.2695847-CDS-C-linearis_contig11:2379929..2380315	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2379930..2380315 -
1622927454.5710485-CDS-C-linearis_contig11:2380762..2380907	1622927454.5710485-CDS-C-linearis_contig11:2380762..2380907	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2380763..2380907 -
1690879710.2774525-CDS-C-linearis_contig11:2380762..2380907	1690879710.2774525-CDS-C-linearis_contig11:2380762..2380907	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2380763..2380907 -
1622927454.5820978-CDS-C-linearis_contig11:2381194..2381332	1622927454.5820978-CDS-C-linearis_contig11:2381194..2381332	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2381195..2381332 -
1690879710.2854514-CDS-C-linearis_contig11:2381194..2381332	1690879710.2854514-CDS-C-linearis_contig11:2381194..2381332	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2381195..2381332 -
1622927454.6273289-CDS-C-linearis_contig11:2381543..2381573	1622927454.6273289-CDS-C-linearis_contig11:2381543..2381573	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2381544..2381573 -
1690879710.2940068-CDS-C-linearis_contig11:2381543..2381573	1690879710.2940068-CDS-C-linearis_contig11:2381543..2381573	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2381544..2381573 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig11:2379544..2382249-
coding sequence from alignment at C-linearis_contig11:2379544..2382249-

protein sequence of mRNA_C-linearis_contig11.1297.1

>prot_C-linearis_contig11.1297.1 ID=prot_C-linearis_contig11.1297.1|Name=mRNA_C-linearis_contig11.1297.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MQHHARGTRKVKASVLNGILERVSSEEELKYATLGLEIFKTQGIDLPTKT
GTLFVKACCKAGSPQTAVDALGGARKYGLDGEGVVSAHRFNYLLSQLYKA
GDADGFKRAVEEARSRQQSLNARSHTLIARFEGEERMKGEEAARAKAEEE
RVAREAEEKAKRGEEEAELKAKEAAEEEARLKEEQENKPKEEEAVAEVTR
DTGAPPPEGDAEQGASENAEAAADAQDVEAKR*

mRNA from alignment at C-linearis_contig11:2379544..2382249-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig11.1297.1 ID=mRNA_C-linearis_contig11.1297.1|Name=mRNA_C-linearis_contig11.1297.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2706bp|location=Sequence derived from alignment at C-linearis_contig11:2379544..2382249- (Chordaria linearis ClinC8C monoicous)
GGGCCTATCCGTAACATTTTTCACGTAGAGGATCGTGTGTACTGCTGTAT
GCTGACCAAACAGAGATCTACAAAATGCTTTCAGTGAGACTCTCTCGTAA
CGAGGGCACCTGGGCCAATTGGCATGCCAGCTGAGCAGTGAACTCCCGTC
TTGCAAAGGCAGAGGAGTTACGTGGCTGGCGTGCACACGCGCACAAAGGT
CGCTTCGCGAACTACCGTGTACTTTTTCAAGAGCATGACCAGCTACCGGT
GATGCGCTGAATATCCCCGAGGCAAGACGTCTATGTATCATACAGTACAA
CAAATGTGTAAATGTACACTAATGCGCTATTTCGTGCGTTCCTACTATGA
CAACGTGCCTATAACATGTCATGTTCCCTCCAGGTACACAAAAAGTCAAC
CACTAGGATTGATGATGTCGGAGGCCCACCCACTCGTCCTTTGCTTCCCG
TCGTTTCCTTCTCCTCTTCCTTCTGCATCTCGAACCCGACGCAACATCAA
ATCCCATCCGCACAGTCGTCAACGCCGTCAAGCAGCGCCCCCACGAGTGG
ACACCCACAAGAGGGCTTAGCGATGCGTCGTCGGGAGCACCTGCAGAGGG
GAAAATAAAGCCGGACTGGCCTGTGGGCACGCCTGCTCCGGGAAGAGTCC
AGACCCTCGGAGAGGCCTTTGCTGCTATGCAACACCACGCTAGGGGCACG
CGAAAGGTACCTAGACCGCTTTGACCGACGAGCCAATGAACGATAAGCAA
CTAGGAGGGTCACTCGTTGCGTTGCAAGCAGACCGTACTGTGTTCCAATA
CACCCTTGCACCCCGCAGAAGGAGACGGAACACGCCGTTTCTCCCTGCTT
TTCGACGAGTTTGTTAATGCCCGAAACGCACTCGGTTCCTACTTCTTTAC
TGGCCGTCGCGCGACAGGTCAAGGCCAGCGTTTTGAATGGCATCTTGGAG
CGAGTGAGTTCCGAAGAAGAGCTCAAGTACGCAACTCTAGGGCTTGAGAT
ATTCAAGACGCAGGGAATAGATCTCCCCACCAAGACGGGAACTCTCTTCG
TCAAGGTAAGCACAGAGCGATAAAAAAGTTGCGAAGCCGGTGGCCCTCTC
GCTTTGGCAGTCAAGCCAGTACTCATTATCTTAACATCGCTTCACTTTTT
CGTGTCGGTCGGATTTGCCAAATGCGTGTGATTGCATCAGCCTGCTTCCA
TTTACTCTAGACCCCGTTGACCCTCGTGGCACCGCTCCCGCACTGTAGCG
CCACGTTTCCCCCCCTCCTCATCCGCTCACTTGATTGTTATTCACCGGTT
GTTTTTCGCCTATTGTGTTGTCTTCTTGAATACTTTCGCAAGGCGTGCTG
TAAGGCGGGATCGCCCCAGACAGCAGTGGATGCTCTGGGGGGGGCAAGGA
AGTACGGCTTGGACGGAGAGGGCGTGGTGAGCGCGCACCGCTTTAATTAT
CTTTTGAGCCAGCTTTACAAGGCCGGAGACGCGGATGGTGAGTGGGTTGC
GGTGGGCCGATGTACGGATATGTTGTCCGCTTGCTTTGTGATGCCGAGCA
TGCTGAAGTTATTGAGGGGTTCGTTGTTGTCAGCACAAAACCACCACCAA
CCCCACACTCCACGCTCTCGCTAGAGTTTCTCCCCCGAAGACTGCTGTTG
AGCTTGTCTCCAAGCTAAGGTTCGAGTTATTTTTGCGCCAGCTCGATGCA
AGCCTCCCCCTCCCTAAAAGAGCACCCCCCACGCCTTTTGGTGGAGCAGA
AAGAGTGCTTCGTCTCTAAAGAGGGCGGCGTACGTACGTGGCCATTTTTT
CAGCGAATTAAGGGAAAAGCGGAGTATGAAAATGAGCTCGCCCCCGTCAA
AATCGCCGCCCTTCCGTCCTCCCCGCTCTGCTCTCACCACCACCCTCCCC
CCACTCTGCTGCGGCACGTTTTACTTATCGGCAGGCTTCAAACGCGCGGT
CGAGGAGGCCCGATCCCGGCAGCAGTCCCTGAACGCCCGCTCGCACACCC
TGATCGCCAGGTTCGAGGGAGAGGAGAGGATGAAGGGGGAGGAAGCGGCC
AGGGCCAAGGCCGAGGAGGAGAGGGTCGCGAGAGAAGCGGAAGAGAAGGC
CAAGAGGGGGGAGGAGGAAGCGGAGCTGAAGGCCAAGGAGGCCGCGGAAG
AAGAGGCTAGACTGAAGGAGGAACAGGAGAACAAGCCCAAGGAAGAGGAA
GCAGTGGCAGAGGTGACCAGGGACACCGGCGCTCCGCCCCCTGAGGGCGA
CGCCGAGCAGGGTGCGTCGGAGAATGCTGAGGCAGCAGCGGATGCGCAAG
ATGTGGAAGCCAAGCGATGAGCGGTTTCGTAACTTTTACTTTTGGTTGTT
GTGTCCAACTAAGTCATCAAGTCATCGCTCGTGCGGTAGGCTCTGTGTGG
CTAGCGGTGTTGAACCGAGTGGGGCAAACTTTTGAGGATGCGGAGCAAGG
CAAAAACTACGAGGGAGATACAATAAGTATAGCTGGGGTTTACTCGCAAG
CAGTCGACGGTTAGATCGACGGGGTTGGGGGAGGCACGCTGGAGGCTGGA
TGGGAAAGGGTCCGTTGTTGGGTCGTTCCTTGGTCGAAATTTCCGGTCTC
AGCAGGTTTCATCATGGAATCGGCGGACATACCGGCGGGATGGAAATATC
ACTGCCGTGTTTGATGTTTCTTGTGACCCACCACATATCCTTGCACTTTG
CGCAGC

Coding sequence (CDS) from alignment at C-linearis_contig11:2379544..2382249-

>mRNA_C-linearis_contig11.1297.1 ID=mRNA_C-linearis_contig11.1297.1|Name=mRNA_C-linearis_contig11.1297.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at C-linearis_contig11:2379544..2382249- (Chordaria linearis ClinC8C monoicous)
ATGCAACACCACGCTAGGGGCACGCGAAAGATGCAACACCACGCTAGGGG
CACGCGAAAGGTCAAGGCCAGCGTTTTGAATGGCATCTTGGAGCGAGTGA
GTTCCGAAGAAGAGCTCAAGTACGCAACTCTAGGGCTTGAGATATTCAAG
ACGCAGGGAATAGATCTCCCCACCAAGACGGGAACTCTCTTCGTCAAGGT
CAAGGCCAGCGTTTTGAATGGCATCTTGGAGCGAGTGAGTTCCGAAGAAG
AGCTCAAGTACGCAACTCTAGGGCTTGAGATATTCAAGACGCAGGGAATA
GATCTCCCCACCAAGACGGGAACTCTCTTCGTCAAGGCGTGCTGTAAGGC
GGGATCGCCCCAGACAGCAGTGGATGCTCTGGGGGGGGCAAGGAAGTACG
GCTTGGACGGAGAGGGCGTGGTGAGCGCGCACCGCTTTAATTATCTTTTG
AGCCAGCTTTACAAGGCCGGAGACGCGGATGGCGTGCTGTAAGGCGGGAT
CGCCCCAGACAGCAGTGGATGCTCTGGGGGGGGCAAGGAAGTACGGCTTG
GACGGAGAGGGCGTGGTGAGCGCGCACCGCTTTAATTATCTTTTGAGCCA
GCTTTACAAGGCCGGAGACGCGGATGGCTTCAAACGCGCGGTCGAGGAGG
CCCGATCCCGGCAGCAGTCCCTGAACGCCCGCTCGCACACCCTGATCGCC
AGGTTCGAGGGAGAGGAGAGGATGAAGGGGGAGGAAGCGGCCAGGGCCAA
GGCCGAGGAGGAGAGGGTCGCGAGAGAAGCGGAAGAGAAGGCCAAGAGGG
GGGAGGAGGAAGCGGAGCTGAAGGCCAAGGAGGCCGCGGAAGAAGAGGCT
AGACTGAAGGAGGAACAGGAGAACAAGCCCAAGGAAGAGGAAGCAGTGGC
AGAGGTGACCAGGGACACCGGCGCTCCGCCCCCTGAGGGCGACGCCGAGC
AGGGTGCGTCGGAGAATGCTGAGGCAGCAGCGGATGCGCAAGATGTGGAA
GCCAAGCGATGAGCTTCAAACGCGCGGTCGAGGAGGCCCGATCCCGGCAG
CAGTCCCTGAACGCCCGCTCGCACACCCTGATCGCCAGGTTCGAGGGAGA
GGAGAGGATGAAGGGGGAGGAAGCGGCCAGGGCCAAGGCCGAGGAGGAGA
GGGTCGCGAGAGAAGCGGAAGAGAAGGCCAAGAGGGGGGAGGAGGAAGCG
GAGCTGAAGGCCAAGGAGGCCGCGGAAGAAGAGGCTAGACTGAAGGAGGA
ACAGGAGAACAAGCCCAAGGAAGAGGAAGCAGTGGCAGAGGTGACCAGGG
ACACCGGCGCTCCGCCCCCTGAGGGCGACGCCGAGCAGGGTGCGTCGGAG
AATGCTGAGGCAGCAGCGGATGCGCAAGATGTGGAAGCCAAGCGATGA