prot_C-linearis_contig11.1281.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1281.1
Unique Nameprot_C-linearis_contig11.1281.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length318
Homology
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BLAST of mRNA_C-linearis_contig11.1281.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 3.880e-29
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 0 
Query:  199 KCSGGCDESQECVFYPG---KGYTCAHQTCDPSPCAENETCSMQKIL------PPVVIC-SSDNCNGKCNDSQVCRQYQGNGKWYCSETCANSP--CEEGEKCVTKQSKWCRRSGFEGCPKKRRCK 312
            +C   C E QEC+ Y       Y CA    DP  CA+NETC + ++       PPV  C +++NC+G C+D+Q C QY  NGK+YCS+TC +SP  CEEGE+C T+  KWCR SG++GCP+KRRC+
Sbjct:  162 ECDVSCGEFQECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASCEATENCDGACDDTQECLQYARNGKYYCSDTC-DSPAACEEGEECSTRPRKWCRSSGYDGCPEKRRCR 286
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1281.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCN7_ECTSI3.880e-2948.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2208026..2210485 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1281.1mRNA_C-linearis_contig11.1281.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 2207519..2210817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1281.1 ID=prot_C-linearis_contig11.1281.1|Name=mRNA_C-linearis_contig11.1281.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=318bp
MGQLTADSCRLFRNWKAVTKEEESLLEAGCVDTCDGTCNEKTQACIFDEG
EHKCADVTCDPSPCGYNEFCNLEESGCTQEPCPTIALCRHACNGKCGDDE
RCILNEEIRCVQAPCLPIAECVKDVCASCGEFQECLSFEGGPKPSPLLRA
GEQDDSEVWYCADFCHPDRCEDNEECELLPTSCASQYMPCPTVAVCKEKC
SGGCDESQECVFYPGKGYTCAHQTCDPSPCAENETCSMQKILPPVVICSS
DNCNGKCNDSQVCRQYQGNGKWYCSETCANSPCEEGEKCVTKQSKWCRRS
GFEGCPKKRRCKRKRKG*
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