mRNA_C-linearis_contig11.1281.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1281.1
Unique NamemRNA_C-linearis_contig11.1281.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1281.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.870e-27
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 3 
Query:  927 KCSGGCDESQECVFYPG---KGYTCAHQTCDPSPCAENETCSMQKIL------PPVVIC-SSDNCNGKCNDSQVCRQYQGNGKWYCSETCANSP--CEEGEKCVTKQSKWCRRSGFEGCPKKRRCK 1268
            +C   C E QEC+ Y       Y CA    DP  CA+NETC + ++       PPV  C +++NC+G C+D+Q C QY  NGK+YCS+TC +SP  CEEGE+C T+  KWCR SG++GCP+KRRC+
Sbjct:  162 ECDVSCGEFQECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASCEATENCDGACDDTQECLQYARNGKYYCSDTC-DSPAACEEGEECSTRPRKWCRSSGYDGCPEKRRCR 286
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCN7_ECTSI1.870e-2748.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2207519..2210817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue3.6e-25
Seed eggNOG ortholog2880.D8LCN7
Hectar predicted targeting categoryother localisation
EggNOG OGs2D2W6@1,2SP8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1793
Cds size954
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927451.5937762-UTR-C-linearis_contig11:2207518..22080251622927451.5937762-UTR-C-linearis_contig11:2207518..2208025Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2207519..2208025 -
1690879708.6735342-UTR-C-linearis_contig11:2207518..22080251690879708.6735342-UTR-C-linearis_contig11:2207518..2208025Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2207519..2208025 -
1622927451.8070107-UTR-C-linearis_contig11:2210485..22108171622927451.8070107-UTR-C-linearis_contig11:2210485..2210817Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2210486..2210817 -
1690879708.7321217-UTR-C-linearis_contig11:2210485..22108171690879708.7321217-UTR-C-linearis_contig11:2210485..2210817Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2210486..2210817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927451.6032603-CDS-C-linearis_contig11:2208025..22081961622927451.6032603-CDS-C-linearis_contig11:2208025..2208196Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2208026..2208196 -
1690879708.6839702-CDS-C-linearis_contig11:2208025..22081961690879708.6839702-CDS-C-linearis_contig11:2208025..2208196Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2208026..2208196 -
1622927451.6132667-CDS-C-linearis_contig11:2208561..22087201622927451.6132667-CDS-C-linearis_contig11:2208561..2208720Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2208562..2208720 -
1690879708.692489-CDS-C-linearis_contig11:2208561..22087201690879708.692489-CDS-C-linearis_contig11:2208561..2208720Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2208562..2208720 -
1622927451.6221807-CDS-C-linearis_contig11:2209397..22096221622927451.6221807-CDS-C-linearis_contig11:2209397..2209622Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2209398..2209622 -
1690879708.7030587-CDS-C-linearis_contig11:2209397..22096221690879708.7030587-CDS-C-linearis_contig11:2209397..2209622Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2209398..2209622 -
1622927451.7845397-CDS-C-linearis_contig11:2209776..22100461622927451.7845397-CDS-C-linearis_contig11:2209776..2210046Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2209777..2210046 -
1690879708.7130113-CDS-C-linearis_contig11:2209776..22100461690879708.7130113-CDS-C-linearis_contig11:2209776..2210046Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2209777..2210046 -
1622927451.7959373-CDS-C-linearis_contig11:2210356..22104851622927451.7959373-CDS-C-linearis_contig11:2210356..2210485Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2210357..2210485 -
1690879708.7237146-CDS-C-linearis_contig11:2210356..22104851690879708.7237146-CDS-C-linearis_contig11:2210356..2210485Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2210357..2210485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1281.1prot_C-linearis_contig11.1281.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2208026..2210485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1281.1

>prot_C-linearis_contig11.1281.1 ID=prot_C-linearis_contig11.1281.1|Name=mRNA_C-linearis_contig11.1281.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=318bp
MGQLTADSCRLFRNWKAVTKEEESLLEAGCVDTCDGTCNEKTQACIFDEG
EHKCADVTCDPSPCGYNEFCNLEESGCTQEPCPTIALCRHACNGKCGDDE
RCILNEEIRCVQAPCLPIAECVKDVCASCGEFQECLSFEGGPKPSPLLRA
GEQDDSEVWYCADFCHPDRCEDNEECELLPTSCASQYMPCPTVAVCKEKC
SGGCDESQECVFYPGKGYTCAHQTCDPSPCAENETCSMQKILPPVVICSS
DNCNGKCNDSQVCRQYQGNGKWYCSETCANSPCEEGEKCVTKQSKWCRRS
GFEGCPKKRRCKRKRKG*
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mRNA from alignment at C-linearis_contig11:2207519..2210817-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1281.1 ID=mRNA_C-linearis_contig11.1281.1|Name=mRNA_C-linearis_contig11.1281.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3299bp|location=Sequence derived from alignment at C-linearis_contig11:2207519..2210817- (Chordaria linearis ClinC8C monoicous)
TCAAAAGCCTCGTTACACCCTGCACCTGCAGCTTAATCATGACACGTGAT
GTTAAGTCTTCTTCCTCCTACATAAGTCATTGACGTACGCTGATCGCTTT
ATCTCCATCGCGCCACAGGCCGCAAAAAGCGGGGTCGAACGGCCTTCTCT
CGTACACTGTTGATGCCCTTTTCTACAAGAGCAAACAAGAGATCGACCAG
TACCAGTACCCCACGGAGCCTACTGCGAAGCACCCACGAGAGATAAGCTT
TATCACCGCGGGTAGTGCAGCCGGATGCGAAGTTTTGCTGGAGCTCGAAG
AGGAGTACTTGATTGGCCTCTACGAAGACGACATGGGGCAGCTAACCGCT
GACTCATGCCGCCTGTTCCGCAACTGGAAGGCTGTCACGAAGGAGGAGGA
GTCGCTCCTGGAGGCCGGTTGCGTCGATACCTGCGATGGGACCTGCAACG
AAAAAACTCAGGTCTGCACAACAAGTGGCGATTTTGCCTGCTCCGCTTGA
CAACTTTGCTAGACCCCCGAACAGCAGTAGCAGCCAGGCACGCCTTCGGG
AAGCGCACCACTCTATGTACTCCTGCAACAACCGTTTTTCTTCCTGGACT
TCTCGCGAAGATTTTGAAAACTTGAGCAACGACCCCCGATTGTTTGGTAT
GTTCCATCGTACGTGGGCCAGCAGTTGTGCTGAGGCTCTTGCATGTTCTG
GGTCTCTGCGGCTGGGCTCAGTTCATTTTCCCCGTCCCAAATTTCCTGCC
CGATTGTTCTTTTGATCTCAGGCGTGCATATTTGATGAAGGTGAACACAA
GTGCGCTGATGTGACCTGCGACCCTAGCCCCTGCGGCTACAACGAGTTTT
GTAATCTCGAGGAGTCGGGCTGCACCCAAGAGCCGTGCCCGACCATCGCT
CTTTGTCGCCACGCGTGCAACGGAAAGTGTGGCGATGACGAAAGATGCAT
TCTCAACGAGGAAATTAGATGCGTCCAGGCTCCGTGCCTGCCAATCGCCG
AATGTGTGAAAGACGTGTGCGCCAGCTGCGGGGAATTTCAGGTACGTGGG
TACGTGCTTCAAGTTGCTGGCGGCTGATTGGTGCTGGAAGGTCGAATCAA
GGGCCAGTGAGGAGTAGAACTGCCTTAGCTGTGAATCGTGTTCCTCAACC
TGCAATAATACAAAAGCTATGCTCTCGTTCCCCGTTTTGCCACAGGAATG
CCTTTCTTTCGAGGGCGGACCAAAGCCGTCGCCCTTGCTCCGCGCGGGCG
AGCAAGATGATTCCGAGGTCTGGTATTGTGCCGACTTCTGCCACCCGGAC
CGCTGTGAAGACAACGAGGAGTGCGAGCTGCTACCAACCTCCTGTGCTAG
CCAATACATGCCATGCCCTACAGTGGCAGTTTGCAAAGAAAAGTGCAGCG
GAGGGTGCGATGAATCGCAGGTGGGTACCGCGGGCTCTTGAAATAGCCTT
TCGTAACCAACCGCTGTTGGCGGAGATTTGGTCAAGTGGTATAATTGGAG
ATACATGTGTCGGTGCACAGCTCGCGGACAATGCTGCGGCATTATCCGTG
TCATGCTGCAGTATGCTGTCTGCCACCGTTTCGGCTTCGAAGTCGCGTCA
AGGAGCATTGGGCCTTGAGTGCATCAAGCACCTGGCTTCATCCTGAAAAT
CGGAGGAGGGCTTGAATTGCTCCATCTGAAGTAGAGTAGCTTCGAGACCG
ATTTGAATACACTTTTTTTTGCCGGTCCTCAACACACGTCAGCCGATCTT
CGAAAACTGCTGCGAAATGTTGGCGTCGTGCATGTTAGGACTCAAACGGA
GAGGTCGCTGGCTGATGACACGCTAAGCACTTCCCGAGAGCTACTCCCTC
CCCAATTTGGCACCTCCGTTGTTTCCCATATCTCCCTCGTGCAACGCGTG
AAAGGTTCGCAATCCAGTTGTAGTACACAGCTGGGGCGTCGATGTGCAAC
CAACTCTCAACTCCTAACCCTTGACCCCGTACAGTTTTCACGCAACAATC
TATGTGGCATGGTTATTGCACCTTTGGAACGCTATTCATCGTCAAGCAAC
ACCCTTCCTGCCCCTACTACCGCGTCTCAAATCCAACGGTACTCTAGGAG
TGCGTCTTCTATCCGGGCAAAGGCTACACGTGCGCGCACCAGACATGCGA
CCCGAGTCCCTGCGCCGAAAACGAAACGTGCTCGATGCAAAAAATCTTGC
CGCCAGTGGTGATCTGTTCGTCGGACAACTGCAACGGAAAGTGCAATGAC
TCCCAGGTTTGTTGGTGTACGGCATCGATGTTGAACTGCATTGTACCACC
ATCTAGCTGGCCTCGGACAGGCGCTTTTTGTTCTCTACCTTGTTACTGTC
GTGATTGTGTTGTCTTCAGTTGTTGATGAGAGAAAGACAGATGGGTTACA
AGTAGTGCACTCGATGGATCCACATCTTGCAGGGCACGATAGATTTGCGC
CCGCTTGGTTTTTGAAGATATCAACATCAGCAAGTGTCTTTGCATCCGTT
TGGAGATTGTTGTGTCCATCTTGCTGCGTGAACATTTCCATCCTGTACAT
ACTCCACACGGACGGATGCTGCGAGGAGGCTTCCTTTGATGCGTGCATCT
CCATTATTTCCCTTGATGCAGGTTTGCCGTCAGTACCAAGGAAACGGAAA
GTGGTACTGCTCCGAGACGTGCGCTAATTCGCCGTGCGAGGAAGGCGAGA
AATGTGTCACCAAACAGTCGAAATGGTGCCGCAGGAGTGGATTCGAAGGA
TGTCCCAAGAAGCGTCGGTGCAAGAGAAAGAGGAAGGGGTAGATATGGAT
GTCTCGATTCAGCTGTGGGTTTTTCGCGCACGCATGCCCGATACTGAACC
GAAGCTTGTTGTTAAGAGTTGTGGGGCTCTTTTCGCAGGCTCGCCTATAA
TTTAGCTTATGCTTGTCCTTCCATCACGAGGCAAGACACGAGTCGGATTG
AGGCAAAAACTGCGCGGGTTAAGAAAGAACGTTCGGAAGCTTACGGCCTC
AGTCGAGGCACCGTCGGCTGTTTCGACGCCGAGAGAGGCACACCAAAGAG
TGGCTTTAAGCTGTAAGAAGGGTGCGTTTTGGAATAGCGTCGTACTTTGT
AGATAATTTTTTGTTGTTTTGCGTGTACCAGTAGTAGTAGGCGAAAGTAG
TTATCTTGGGTAGCGAGTTGTGTGAGGTCAAGAGTTGACGTGAATACTTT
GGTGTTTGCATAATGAAGCACTCCCCACTGTCTGTGGGGATGGACGTTCC
GGTGCGCCGGAGGCCTCCCTCTACCTTGAGTACCATGAGGTGAACGACG
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Coding sequence (CDS) from alignment at C-linearis_contig11:2207519..2210817-

>mRNA_C-linearis_contig11.1281.1 ID=mRNA_C-linearis_contig11.1281.1|Name=mRNA_C-linearis_contig11.1281.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at C-linearis_contig11:2207519..2210817- (Chordaria linearis ClinC8C monoicous)
ATGGGGCAGCTAACCGCTGACTCATGCCGCCTGTTCCGCAACTGGAAGGC
TGTCACGAAGGAGGAGGAGTCGCTCCTGGAGGCCGGTTGCGTCGATACCT
GCGATGGGACCTGCAACGAAAAAACTCAGATGGGGCAGCTAACCGCTGAC
TCATGCCGCCTGTTCCGCAACTGGAAGGCTGTCACGAAGGAGGAGGAGTC
GCTCCTGGAGGCCGGTTGCGTCGATACCTGCGATGGGACCTGCAACGAAA
AAACTCAGGCGTGCATATTTGATGAAGGTGAACACAAGTGCGCTGATGTG
ACCTGCGACCCTAGCCCCTGCGGCTACAACGAGTTTTGTAATCTCGAGGA
GTCGGGCTGCACCCAAGAGCCGTGCCCGACCATCGCTCTTTGTCGCCACG
CGTGCAACGGAAAGTGTGGCGATGACGAAAGATGCATTCTCAACGAGGAA
ATTAGATGCGTCCAGGCTCCGTGCCTGCCAATCGCCGAATGTGTGAAAGA
CGTGTGCGCCAGCTGCGGGGAATTTCAGGCGTGCATATTTGATGAAGGTG
AACACAAGTGCGCTGATGTGACCTGCGACCCTAGCCCCTGCGGCTACAAC
GAGTTTTGTAATCTCGAGGAGTCGGGCTGCACCCAAGAGCCGTGCCCGAC
CATCGCTCTTTGTCGCCACGCGTGCAACGGAAAGTGTGGCGATGACGAAA
GATGCATTCTCAACGAGGAAATTAGATGCGTCCAGGCTCCGTGCCTGCCA
ATCGCCGAATGTGTGAAAGACGTGTGCGCCAGCTGCGGGGAATTTCAGGA
ATGCCTTTCTTTCGAGGGCGGACCAAAGCCGTCGCCCTTGCTCCGCGCGG
GCGAGCAAGATGATTCCGAGGTCTGGTATTGTGCCGACTTCTGCCACCCG
GACCGCTGTGAAGACAACGAGGAGTGCGAGCTGCTACCAACCTCCTGTGC
TAGCCAATACATGCCATGCCCTACAGTGGCAGTTTGCAAAGAAAAGTGCA
GCGGAGGGTGCGATGAATCGCAGGAATGCCTTTCTTTCGAGGGCGGACCA
AAGCCGTCGCCCTTGCTCCGCGCGGGCGAGCAAGATGATTCCGAGGTCTG
GTATTGTGCCGACTTCTGCCACCCGGACCGCTGTGAAGACAACGAGGAGT
GCGAGCTGCTACCAACCTCCTGTGCTAGCCAATACATGCCATGCCCTACA
GTGGCAGTTTGCAAAGAAAAGTGCAGCGGAGGGTGCGATGAATCGCAGGA
GTGCGTCTTCTATCCGGGCAAAGGCTACACGTGCGCGCACCAGACATGCG
ACCCGAGTCCCTGCGCCGAAAACGAAACGTGCTCGATGCAAAAAATCTTG
CCGCCAGTGGTGATCTGTTCGTCGGACAACTGCAACGGAAAGTGCAATGA
CTCCCAGGAGTGCGTCTTCTATCCGGGCAAAGGCTACACGTGCGCGCACC
AGACATGCGACCCGAGTCCCTGCGCCGAAAACGAAACGTGCTCGATGCAA
AAAATCTTGCCGCCAGTGGTGATCTGTTCGTCGGACAACTGCAACGGAAA
GTGCAATGACTCCCAGGTTTGCCGTCAGTACCAAGGAAACGGAAAGTGGT
ACTGCTCCGAGACGTGCGCTAATTCGCCGTGCGAGGAAGGCGAGAAATGT
GTCACCAAACAGTCGAAATGGTGCCGCAGGAGTGGATTCGAAGGATGTCC
CAAGAAGCGTCGGTGCAAGAGAAAGAGGAAGGGGTAGGTTTGCCGTCAGT
ACCAAGGAAACGGAAAGTGGTACTGCTCCGAGACGTGCGCTAATTCGCCG
TGCGAGGAAGGCGAGAAATGTGTCACCAAACAGTCGAAATGGTGCCGCAG
GAGTGGATTCGAAGGATGTCCCAAGAAGCGTCGGTGCAAGAGAAAGAGGA
AGGGGTAG
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