prot_C-linearis_contig11.1216.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1216.1
Unique Nameprot_C-linearis_contig11.1216.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length518
Homology
BLAST of mRNA_C-linearis_contig11.1216.1 vs. uniprot
Match: A0A6H5K6S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S9_9PHAE)

HSP 1 Score: 449 bits (1156), Expect = 4.550e-151
Identity = 303/524 (57.82%), Postives = 349/524 (66.60%), Query Frame = 0
Query:    3 RSSSTPPN-TGRAGFVVGILLGKAGCPVQALMPSVASSFRGYSAPSSLVLQRARG-RACVRRRPGDLRLLAAGGESGGAGDIDSSVLYADMRRRLEELRRGGPEDSAPAAA---EDVSDLGLFQQEDWRDDGGLPGGGGSAGAAEAKMYSAQEMKQRYYEAFWRARNLHKEAKFRGTSDSIREDSSDTPTSPPATPPPEAQAVASRTTTLTPMAMNMFLS-GKAAADADPVTPSSASSDDVQGLTQMYXXXXXXXXXXXXXXXXSHAPASEAAAYAGGVGRTAGAPLSLGKKPEWQQXXXXXXXGASLPKRR-QAAFASSEGAGAGVSYRDSVTSM--SAEPQGLTQVFYLDPEEEAEAAAALPIVPRRSFLRERLGVPGEVVQGLRQVELDHARLAMIAVLVSGAVGAXXXXXXXVYMNAHDGLSALAEVARTPWLDPYVAGGILAAKALSEGDWRIGKGALAGCADRALSSLSNAGAKVLRVGSGNELRRLAVEIEVKHGRLALGAVVCAMVQQGILTTVAA 517
            R S+TPP+  G A  VVG+LLG++G  VQA +P+     RG S+  +     ARG RA VR R GD+RL A GG SGGAGDIDSS LYADMRRRLEELR+     S    +   +DVSD GLFQQ++                  AK YSAQEMKQRYYEAFWRARNLH+EAKF  +S +  + SSDTP +PPATPPPEA+A  SRTT L+ MAMNMFLS G                 DVQGLTQMY                + A  +EA                                   LP R+ Q A  S+E   A         SM  +A+PQGLTQVF+LDPE+EA AAAALP+VP RSFLRERLGVPGE+VQ LRQVELDHARLAM+AVL+SG VGA XXXXX V +NAHDG SALA+VARTPWLDPYVAGGILAAKALSEGDWR+GKGA+AG ADRAL+++SN GAKVLR+GSGNELRRLAVE+EVKHGR+ALGAVVCAM QQG+LT+VAA
Sbjct:    6 RPSTTPPSGAGPACLVVGLLLGRSGRAVQAFVPT---HHRGVSSLLTRPFAPARGGRALVRPRAGDMRLSATGG-SGGAGDIDSSELYADMRRRLEELRQSSSSRSDTGFSPIEDDVSDPGLFQQQNXXXXXXXX-------XXXAKAYSAQEMKQRYYEAFWRARNLHREAKFEASSGAEDDYSSDTP-APPATPPPEAEA-GSRTTILSHMAMNMFLSRGAXXXXXXXXXXXXXXXSDVQGLTQMYHLELEEEEGVLASTAVAAAATAEA-----------------------------------LPVRQPQHAAVSTEAVFAAPDVAAEAESMIPTAQPQGLTQVFFLDPEDEALAAAALPVVPERSFLRERLGVPGELVQDLRQVELDHARLAMLAVLLSGVVGAGXXXXXGVLLNAHDGFSALADVARTPWLDPYVAGGILAAKALSEGDWRVGKGAMAGLADRALNAVSNTGAKVLRLGSGNELRRLAVEVEVKHGRMALGAVVCAMAQQGLLTSVAA 481          
BLAST of mRNA_C-linearis_contig11.1216.1 vs. uniprot
Match: D8LGH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH2_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 1.080e-134
Identity = 293/488 (60.04%), Postives = 334/488 (68.44%), Query Frame = 0
Query:    1 MPRS---SSTPPNTGRAGFVVGILLGKAGCPVQALMPSVASSFRGYSAPSSLVLQRARGRACVRRRPGDLRLLAAGGESGGAGDIDSSVLYADMRRRLEELRRGGPEDSAPAAA---EDVSDLGLFQQEDWRDDGGLPGGGGSAGAAEAKMYSAQEMKQRYYEAFWRARNLHKEAKFRGTSDSIREDSSDTPTSPPATPPPEAQAVASRTTTLTPMAMNMFLSGKAAADADPVTPSSASSDDVQGLTQMYXXXXXXXXXXXXXXXXSHAPASEAAAYAGGVGRTAGAPLSLGKKPEWQQXXXXXXXGASLPKRRQAAFASSEGAGAGVSYRDSVTSMSAEPQGLTQVFYLDPEEEAEAAAALPIVPRRSFLRERLGVPGEVVQGLRQVELDHARLAMIAVLVSGAVGAXXXXXXXVYMNAHDGLSALAEVARTPWLDPYVAGGILAAKALSEGDWRIGKGALAGCADRALSSLSNAGAKVLRVGSGNE 482
            MPRS   ++TP   G A  V+G+LL ++G  VQA +P+     RG S+ +        GRA VR R GD+RL A GG SGGAGDIDSS LYADMRRRLEELR+     S    +   +DVSDLGLFQQ                    AK YSAQEMKQRYYEAFWRARNLHKEAKF G+S    + SSDTP +PPATPPPEA+A  SRTT L+ MAM+MFLS  AAA+AD        S DVQGLTQMY      XXXXXXXXXX                 TA  PL + ++P+          GA      +A FA+S+ A A  S   +     AEPQGLTQVF+LDP++EA AAAALP+VP RSFLRERLGVPGEVVQ LRQVELDHARLAM+AVL+SGAVGAXXXXXXXV + AHDG SALA+VARTPWLDPYVAGGILAAKALSEGDWRIGKGA+AG ADRALS++SN GAKVLR+GSGNE
Sbjct:    1 MPRSRWPNTTPSGAGPACLVLGLLLSRSGRSVQAFVPA---HHRGVSSLTPPSAPARGGRALVRPRAGDMRLSATGG-SGGAGDIDSSELYADMRRRLEELRQSSSSSSDTGLSPIEDDVSDLGLFQQXXXXXXXXXX-------XXXAKAYSAQEMKQRYYEAFWRARNLHKEAKFEGSSGIEDDYSSDTP-APPATPPPEAEA-GSRTTILSHMAMDMFLSRGAAAEADDXXXXXXXSSDVQGLTQMYYLELEEXXXXXXXXXXX-------------XXXTAAEPLPV-RQPQ------HAAVGA------EAVFAASDVAAAAESMIPT-----AEPQGLTQVFFLDPKDEALAAAALPVVPGRSFLRERLGVPGEVVQDLRQVELDHARLAMLAVLLSGAVGAXXXXXXXVLLKAHDGFSALADVARTPWLDPYVAGGILAAKALSEGDWRIGKGAMAGWADRALSAVSNTGAKVLRLGSGNE 444          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6S9_9PHAE4.550e-15157.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGH2_ECTSI1.080e-13460.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 372..509
e-value: 8.3E-6
score: 26.4
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 367..517
e-value: 9.5E-9
score: 37.3
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 376..511

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1069436..1077650 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1216.1mRNA_C-linearis_contig11.1216.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 1069277..1078916 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1216.1 ID=prot_C-linearis_contig11.1216.1|Name=mRNA_C-linearis_contig11.1216.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=518bp
MPRSSSTPPNTGRAGFVVGILLGKAGCPVQALMPSVASSFRGYSAPSSLV
LQRARGRACVRRRPGDLRLLAAGGESGGAGDIDSSVLYADMRRRLEELRR
GGPEDSAPAAAEDVSDLGLFQQEDWRDDGGLPGGGGSAGAAEAKMYSAQE
MKQRYYEAFWRARNLHKEAKFRGTSDSIREDSSDTPTSPPATPPPEAQAV
ASRTTTLTPMAMNMFLSGKAAADADPVTPSSASSDDVQGLTQMYYLVEEE
EAAATTAVVSSHAPASEAAAYAGGVGRTAGAPLSLGKKPEWQQQQQQQQT
GASLPKRRQAAFASSEGAGAGVSYRDSVTSMSAEPQGLTQVFYLDPEEEA
EAAAALPIVPRRSFLRERLGVPGEVVQGLRQVELDHARLAMIAVLVSGAV
GAGAGAGAGVYMNAHDGLSALAEVARTPWLDPYVAGGILAAKALSEGDWR
IGKGALAGCADRALSSLSNAGAKVLRVGSGNELRRLAVEIEVKHGRLALG
AVVCAMVQQGILTTVAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf