prot_C-linearis_contig11.1214.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1214.1
Unique Nameprot_C-linearis_contig11.1214.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length275
Homology
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BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Match: A0A6H5KI74_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI74_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 8.120e-52
Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 0 
Query:    1 MSRGGRGDSE-RGNGPPNIDGMVTLKVDNIAYTCTVEELRDVFERSGKLGDVYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARKRRPDGGGGGGEG 112
            MS G  G S+ RG+GPPNIDGMVTLKVDNIA+TC+ EELR+VFE  GKLGDVYIPRDMRTG+PRGFAFVRYL++RDADDA+DRLDG R NGRELRIQYARKRRP GGG GG G
Sbjct:    1 MSYGRHGGSDQRGSGPPNIDGMVTLKVDNIAFTCSPEELREVFEGCGKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADDAVDRLDGTRFNGRELRIQYARKRRPGGGGSGGYG 113
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BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Match: A0A6H5KLI3_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLI3_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 4.630e-42
Identity = 71/102 (69.61%), Postives = 90/102 (88.24%), Query Frame = 0 
Query:   11 RGNGPPNIDGMVTLKVDNIAYTCTVEELRDVFERSGKLGDVYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARKRRPDGGGGGGEG 112
            RGNGPPNI+GM+TLKVDN+ Y  ++++LR +FE+ G+LGDVY+PRD+RTG+PRGFAFVR+++QRDADDAIDR+DGE   GRELRIQYA+KRRP+  GG G G
Sbjct:   16 RGNGPPNIEGMITLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGYGGG 117
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BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Match: D8LGH4_ECTSI (Serine/arginine rich splicing factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH4_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.310e-37
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0 
Query:   21 MVTLKVDNIAYTCTVEELRDVFERSGKLGDVYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARKRRP 103
            MVTLKVDNIA+TC+ EELR+VFE  GKLGDVYIPRDMRTG+PRGFAFVRYL++RDAD A+DRLDG R NGRELRIQYARKRRP
Sbjct:    1 MVTLKVDNIAFTCSPEELREVFEGCGKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADYAVDRLDGTRFNGRELRIQYARKRRP 83
[Close]
BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Match: A0A835ZAC4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.110e-32
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = 0 
Query:   10 ERGNGPPNIDGMVTLKVDNIAYTCTVEELRDVFERSGKLGDVYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 104
            ER   PP+I GM+TLKVDNI +  T +E+R VF++ G++GDVYIPRD  TGDPRGFAFVRYL+  DA++A+  +DG+ L+GR LRIQ+A +RRPD
Sbjct:    3 ERTYNPPDISGMITLKVDNITFRTTADEVRRVFDKYGEVGDVYIPRDKATGDPRGFAFVRYLDNHDAEEALTAMDGKELDGRTLRIQFAMQRRPD 97
[Close]
BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Match: A0A6S7FVA8_PARCT (Serine arginine-rich splicing factor 2 n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7FVA8_PARCT)

HSP 1 Score: 121 bits (304), Expect = 3.260e-30
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 0 
Query:   10 ERGNGPPNIDGMVTLKVDNIAYTCTVEELRDVFERSGKLGDVYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARKRRP 103
            +RG GPPNI+GM +LKVDN+ Y  TV++L+ VF   G +GDVYIPRD RT   RGFAFVR+ E+RDA+DA+DR+DG  L+GRE+R+Q A+  RP
Sbjct:    4 DRGRGPPNIEGMTSLKVDNLTYRTTVDDLKKVFRAYGDVGDVYIPRDARTNQSRGFAFVRFFERRDAEDAMDRVDGSVLDGREIRVQNAKYGRP 97
[Close]
BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Match: UPI000A1D17A4 (serine/arginine-rich splicing factor 2 n=1 Tax=Drosophila serrata TaxID=7274 RepID=UPI000A1D17A4)

HSP 1 Score: 120 bits (301), Expect = 9.820e-30
Identity = 62/104 (59.62%), Postives = 77/104 (74.04%), Query Frame = 0 
Query:    1 MSRGGRGDSERG-NGPPNIDGMVTLKVDNIAYTCTVEELRDVFERSGKLGDVYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARKRRP 103
            MS GG G    G   PP IDGMV+LKVDN+ Y  T E+LR VFER G++GD+YIPRD  T + RGFAFVR+ ++RDA+DA+D +DG  L+GRELR+Q AR  RP
Sbjct:    1 MSNGGSGGGLGGARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALDAMDGRMLDGRELRVQMARYGRP 104
[Close]
BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Match: A0A7S3XQ99_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ99_HETAK)

HSP 1 Score: 122 bits (307), Expect = 1.050e-29
Identity = 59/107 (55.14%), Postives = 82/107 (76.64%), Query Frame = 0 
Query:   12 GNGPPNIDGMVTLKVDNIAYTCTVEELRDVFERSGKLGDVYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARKRRPDG--------GGGGG 110
            G GPP+I G+ TLKVDNI++ C +++LRD+FE+ G +GDVYIPRD RT + RGF FVR+ ++RDA+DA+D +DG+R++GRELR+ +A + RPD         GGGGG
Sbjct:   22 GQGPPDIKGLHTLKVDNISFRCQLDDLRDMFEKYGDIGDVYIPRDHRTQEGRGFGFVRFHDKRDAEDALDAMDGKRVDGRELRVAFAERDRPDNPRKYFTTRGGGGG 128
[Close]
BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Match: UPI0018CEEA47 (serine/arginine-rich splicing factor 2 n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CEEA47)

HSP 1 Score: 119 bits (299), Expect = 1.610e-29
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 0 
Query:    1 MSRGGRGDSERGNGPPNIDGMVTLKVDNIAYTCTVEELRDVFERSGKLGDVYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARKRRP 103
            MS G  G S     PP IDGMV+LKVDN+ Y  T E+LR VFER G++GD+YIPRD  T + RGFAFVRY ++RDA+DA++ +DG  L+GRELR+Q AR  RP
Sbjct:    1 MSHGNSGSSSN-RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRYYDKRDAEDALEAMDGRMLDGRELRVQMARFGRP 102
[Close]
BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Match: A0A194QB33_PAPXU (Serine/arginine-rich splicing factor 2 n=1 Tax=Papilio xuthus TaxID=66420 RepID=A0A194QB33_PAPXU)

HSP 1 Score: 119 bits (299), Expect = 1.700e-29
Identity = 58/92 (63.04%), Postives = 71/92 (77.17%), Query Frame = 0 
Query:   12 GNGPPNIDGMVTLKVDNIAYTCTVEELRDVFERSGKLGDVYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARKRRP 103
            G  PP IDGMV+LKVDN+ Y  T E+LR VFER G +GD+YIPRD  T + RGFAFVR+ ++RDA+DA+D LDG  L+GRELR+Q AR  RP
Sbjct:    4 GRPPPRIDGMVSLKVDNLTYRTTAEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFFDRRDAEDALDSLDGRMLDGRELRVQMARYGRP 95
[Close]
BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Match: A0A4D9D0X0_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0X0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.710e-29
Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 0 
Query:   14 GPPNIDGMVTLKVDNIAYTCTVEELRDVFERSGKLGDVYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARKRRPD----GGGG 108
            GPP IDGM TLK+DNI Y CT E+LR++F+ +G++GDVYIPRD  +GD RGFAFVRY E+ DA+ A++++DG    GR+LR+  A ++RPD    GGGG
Sbjct:   22 GPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDHSRDGGGG 120
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1214.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI74_9PHAE8.120e-5280.53RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KLI3_9PHAE4.630e-4269.61RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LGH4_ECTSI1.310e-3784.34Serine/arginine rich splicing factor, putative n=1... [more]
A0A835ZAC4_9STRA2.110e-3261.05RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6S7FVA8_PARCT3.260e-3060.64Serine arginine-rich splicing factor 2 n=2 Tax=Alc... [more]
UPI000A1D17A49.820e-3059.62serine/arginine-rich splicing factor 2 n=1 Tax=Dro... [more]
A0A7S3XQ99_HETAK1.050e-2955.14Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
UPI0018CEEA471.610e-2959.22serine/arginine-rich splicing factor 2 n=1 Tax=Tel... [more]
A0A194QB33_PAPXU1.700e-2963.04Serine/arginine-rich splicing factor 2 n=1 Tax=Pap... [more]
A0A4D9D0X0_9STRA1.710e-2957.58RRM domain-containing protein n=1 Tax=Nannochlorop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 23..96
e-value: 3.6E-21
score: 86.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 26..94
e-value: 7.7E-18
score: 64.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 22..100
score: 18.837
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 7..117
e-value: 9.9E-25
score: 89.0
NoneNo IPR availablePANTHERPTHR23147:SF17SERINE/ARGININE-RICH SPLICING FACTOR 2coord: 16..199
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 16..199
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 15..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1057109..1061535 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1214.1mRNA_C-linearis_contig11.1214.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 1055909..1063627 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1214.1 ID=prot_C-linearis_contig11.1214.1|Name=mRNA_C-linearis_contig11.1214.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=275bp
MSRGGRGDSERGNGPPNIDGMVTLKVDNIAYTCTVEELRDVFERSGKLGD
VYIPRDMRTGDPRGFAFVRYLEQRDADDAIDRLDGERLNGRELRIQYARK
RRPDGGGGGGEGGGYGRGGGGYGGGGGGYGGGGGGGYGGGRYGGGGGRDD
RGGRSRSPRRRSKSRSPPPRRRRSRSRSRSPRSPPAADKKERRQRRSRSA
SPREAPSRERRSRSRSGGRGSGGDLKEERNGKDERNGGDRKSHRDDDAGR
GERRSGRGAPKHGEDDGSPAHADA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf