prot_C-linearis_contig11.1192.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1192.1
Unique Nameprot_C-linearis_contig11.1192.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length240
Homology
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BLAST of mRNA_C-linearis_contig11.1192.1 vs. uniprot
Match: D8LGF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF3_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 2.370e-49
Identity = 85/98 (86.73%), Postives = 87/98 (88.78%), Query Frame = 0 
Query:    1 MAASATEQFRPCRRVLTPGFSGANHPRAQGLLRIEPTPRTTPRPTGLRTNAEASRRSGYDIPDPGLVLQSKHVVVMDDTGRAAKERVSGELTLEKAFG 98
            MA SATEQFRPCRRVLTPGFSG    R QGL RIE +PR TPRPTGLRTNA+ASRRSGYDIPDPGLVLQSKHVV MDDTGR AKERVSGELTLEKAFG
Sbjct:    1 MAGSATEQFRPCRRVLTPGFSGTEEARPQGLARIESSPRVTPRPTGLRTNAKASRRSGYDIPDPGLVLQSKHVV-MDDTGRPAKERVSGELTLEKAFG 97
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BLAST of mRNA_C-linearis_contig11.1192.1 vs. uniprot
Match: A0A835YX95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX95_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.210e-27
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 0 
Query:   46 GLRTNAEASRRSGYDIPDPGLVLQSKHVVVMDD-TGRAAKERVSGELTLEKAFGLKRKVNSQRERRGGVPAKGNPGDKLFHHVDYSPGFHENGELIVGSSFYRSMPRRG 153
            GLR   E SRRSG+D+PDP L LQ K VVV D  TG  AK+ VSGELTLE+ FG+K K+   R  R  + A+  PGDKL+HHVDYSPGF+  G  +VGS+F R   R G
Sbjct:   89 GLRQIPELSRRSGFDMPDPDLSLQRKRVVVADAATGAFAKDHVSGELTLERTFGVKHKLAEMRGVRNAI-AQACPGDKLYHHVDYSPGFYREGGHVVGSTFVRDAARVG 196
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1192.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF3_ECTSI2.370e-4986.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YX95_9STRA3.210e-2756.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:796984..799178 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1192.1mRNA_C-linearis_contig11.1192.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 796984..799178 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1192.1 ID=prot_C-linearis_contig11.1192.1|Name=mRNA_C-linearis_contig11.1192.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=240bp
MAASATEQFRPCRRVLTPGFSGANHPRAQGLLRIEPTPRTTPRPTGLRTN
AEASRRSGYDIPDPGLVLQSKHVVVMDDTGRAAKERVSGELTLEKAFGLK
RKVNSQRERRGGVPAKGNPGDKLFHHVDYSPGFHENGELIVGSSFYRSMP
RRGEGRTALGEVTAPATIPGDLGYALQYRKPKMAFHETRQALGYLEDLRA
VLELTEAAPAPSTTGGPDEGVSWEERTGMRTWPRKEKAP*
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