mRNA_C-linearis_contig11.1192.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1192.1
Unique NamemRNA_C-linearis_contig11.1192.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1192.1 vs. uniprot
Match: D8LGF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF3_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 2.370e-49
Identity = 85/98 (86.73%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:    1 MAASATEQFRPCRRVLTPGFSGANHPRAQGLLRIEPTPRTTPRPTGLRTNAEASRRSGYDIPDPGLVLQSKHVVVMDDTGRAAKERVSGELTLEKAFG 294
            MA SATEQFRPCRRVLTPGFSG    R QGL RIE +PR TPRPTGLRTNA+ASRRSGYDIPDPGLVLQSKHVV MDDTGR AKERVSGELTLEKAFG
Sbjct:    1 MAGSATEQFRPCRRVLTPGFSGTEEARPQGLARIESSPRVTPRPTGLRTNAKASRRSGYDIPDPGLVLQSKHVV-MDDTGRPAKERVSGELTLEKAFG 97
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BLAST of mRNA_C-linearis_contig11.1192.1 vs. uniprot
Match: A0A835YX95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX95_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.210e-27
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:  136 GLRTNAEASRRSGYDIPDPGLVLQSKHVVVMDD-TGRAAKERVSGELTLEKAFGLKRKVNSQRERRGGVPAKGNPGDKLFHHVDYSPGFHENGELIVGSSFYRSMPRRG 459
            GLR   E SRRSG+D+PDP L LQ K VVV D  TG  AK+ VSGELTLE+ FG+K K+   R  R  + A+  PGDKL+HHVDYSPGF+  G  +VGS+F R   R G
Sbjct:   89 GLRQIPELSRRSGFDMPDPDLSLQRKRVVVADAATGAFAKDHVSGELTLERTFGVKHKLAEMRGVRNAI-AQACPGDKLYHHVDYSPGFYREGGHVVGSTFVRDAARVG 196
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF3_ECTSI2.370e-4986.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YX95_9STRA3.210e-2756.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:796984..799178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003840.1
Exons5
Model size720
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1192.1prot_C-linearis_contig11.1192.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 796984..799178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.20208-CDS-C-linearis_contig11:796983..7971841622927436.20208-CDS-C-linearis_contig11:796983..797184Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 796984..797184 +
1690879698.834215-CDS-C-linearis_contig11:796983..7971841690879698.834215-CDS-C-linearis_contig11:796983..797184Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 796984..797184 +
1622927436.2191293-CDS-C-linearis_contig11:797770..7978611622927436.2191293-CDS-C-linearis_contig11:797770..797861Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 797771..797861 +
1690879698.844842-CDS-C-linearis_contig11:797770..7978611690879698.844842-CDS-C-linearis_contig11:797770..797861Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 797771..797861 +
1622927436.2889602-CDS-C-linearis_contig11:798060..7982081622927436.2889602-CDS-C-linearis_contig11:798060..798208Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 798061..798208 +
1690879698.8542118-CDS-C-linearis_contig11:798060..7982081690879698.8542118-CDS-C-linearis_contig11:798060..798208Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 798061..798208 +
1622927436.3008814-CDS-C-linearis_contig11:798543..7987181622927436.3008814-CDS-C-linearis_contig11:798543..798718Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 798544..798718 +
1690879698.863637-CDS-C-linearis_contig11:798543..7987181690879698.863637-CDS-C-linearis_contig11:798543..798718Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 798544..798718 +
1622927436.3124332-CDS-C-linearis_contig11:799073..7991781622927436.3124332-CDS-C-linearis_contig11:799073..799178Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 799074..799178 +
1690879698.8750677-CDS-C-linearis_contig11:799073..7991781690879698.8750677-CDS-C-linearis_contig11:799073..799178Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 799074..799178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1192.1

>prot_C-linearis_contig11.1192.1 ID=prot_C-linearis_contig11.1192.1|Name=mRNA_C-linearis_contig11.1192.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=240bp
MAASATEQFRPCRRVLTPGFSGANHPRAQGLLRIEPTPRTTPRPTGLRTN
AEASRRSGYDIPDPGLVLQSKHVVVMDDTGRAAKERVSGELTLEKAFGLK
RKVNSQRERRGGVPAKGNPGDKLFHHVDYSPGFHENGELIVGSSFYRSMP
RRGEGRTALGEVTAPATIPGDLGYALQYRKPKMAFHETRQALGYLEDLRA
VLELTEAAPAPSTTGGPDEGVSWEERTGMRTWPRKEKAP*
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mRNA from alignment at C-linearis_contig11:796984..799178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1192.1 ID=mRNA_C-linearis_contig11.1192.1|Name=mRNA_C-linearis_contig11.1192.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2195bp|location=Sequence derived from alignment at C-linearis_contig11:796984..799178+ (Chordaria linearis ClinC8C monoicous)
ATGGCGGCTTCAGCCACCGAGCAGTTCCGCCCTTGCCGAAGGGTGCTCAC
CCCTGGCTTTTCAGGGGCGAACCATCCTCGCGCGCAGGGACTGCTGAGGA
TTGAACCGACCCCACGGACCACTCCGAGGCCTACAGGCTTGCGTACGAAT
GCAGAGGCGTCGCGCCGATCGGGGTATGACATCCCCGACCCCGGGCTTGT
GGTGAGGCCAGTGCGATACTACTTGAGCTTCTCTTCCCGACCACGAAATC
GGCTGGGAGTCTCGGTTGTCTGAAAGATCAGGCGAAGCACGAAGTAGACG
ACCAAAGAAAGGGTAGATGGGTGCGTATGTATCGAAGATATGGGCAGGTC
GTGGAAGGTTCTGGATTCACTCAAGCAAGGAAGCTCGTTTTCTCGGGCTT
CGAGTGCGTTTAAATATTGCACCAATCGCAATCCGCACAAGAAGGCAATC
AATTATGCAATGTCACCCGGATGTGAAATAGACGCACAAGGGCGAGCGCC
GAACACCACCGGACTTATCCTCCGCTAACCGTCACCTGTGAAGAGGGAAG
TAGGCGGCTTTCCACGAAAGTGTGCAGGAAAGTTGAACTCTCACTGGAGG
CGATATCTTGTAAGTGGGCAGAGCCATCTGTAAGTACCCGGCGCATTGCT
TACGAAATCAAAGTTTGGCCAATCCTTTTTCGAGCTCTGGAACGATAATA
ACGTGAATCACACCCTCGGCCTCTGGGCGCCGCAATGTGTCTTCTTGTCG
GATATACGCCCGGCCGGCGATGAACCACTTTGTTCAGCTGCAATCGAAGC
ACGTGGTGGTGATGGACGACACAGGACGAGCCGCCAAGGAACGTGTTTCA
GGAGAACTCACCTTGGAGAAAGCCTTCGGTGCGTGCGTACGTGTTGTCCA
CGAAGGTTGATTCCAATCATTTTCCCACGACATGATGTTTTCCCAGGCCT
GTACACAGTAGTACCGTTGTTGGTGGCCCGTCGTTGGAGCTCTACATCAG
AGTCGAGACAAGGACACACCCAGCTTTTTTCTCTCAAGGCCTTCTCTTGC
TGCATCGACTGTGTGCTCTGTTGCTAGGGTTGAAGCGCAAGGTTAACTCG
CAGCGGGAAAGGCGAGGAGGCGTGCCTGCCAAGGGAAACCCTGGAGACAA
GCTGTTCCATCACGTGGACTACTCGCCAGGGTTCCATGAAAACGGGGAGC
TCATCGTCGGGAGCTCGTTTTACAGGTCGGTAGAAGAAGTGGCACGAACT
TAAGATGTGCCTGTTTAACATCCCCATGTAGTCTAGACTATACGTTTCCT
TCAGGGGGGCTGTGACGCGCGACGTGTGGGCTTATTGAGTTCAGTGGGGC
AACAGGCAGGCAGTGCTATCAAACGTGCAACTGGTAGACATACTTGTTTC
TGTGCCTTGGTTGAAGTTCGGGGTGCTTTATCGGTGTGGATCGTAGCGTC
CTCCTCGCGTGGACACAACAGTAGTCGCTCTTTAAGGTTTTGTGGAGCTT
TTGTGCTCGTAGAACTGGTCGGCGGCTTCACCGTAGCCCTTGCTTTGCAT
TCGAATCCAGAAGCATGCCTCGTCGCGGTGAAGGGCGCACTGCCCTAGGG
GAAGTCACTGCTCCCGCGACCATTCCAGGTGACCTTGGATACGCTCTCCA
ATACCGGAAGCCAAAAATGGCGTTCCACGAGACTCGACAGGCACTGGGTT
ATCTAGAAGATCTGCGAGCGGTGCTTGAGCTCACAGTGAGTGAATACAAC
ACGCGCGAAAATGACTATACCGCAGAATGATTCAAAGTAGACTACTGGGT
GCACTTGCGTCGCGCGTATCACAATCAATTGTGGGTGCTGGGTTCATCCC
CTTGTCAGATAACCCGCCTTCTCACTGTATACGCTCGATGACCCCGCCCT
TCCCCATCTTGTTTGCAGCTTGATTGATATGAAAAACATGTGCTGCCCGT
GCCCCATATCACGAAAAAACGGAAAAACCACGGTCACTTCTTGCTCCCAT
CTGCCACTGCTAAGGTGATAATGAAGTATTAGCTAACTGATGCGTGAGAA
CCCGGAATTGCGTTGTGCACACGCTACTTATACCACTCAGGAGGCCGCGC
CCGCGCCGTCAACAACCGGCGGCCCAGATGAGGGGGTGAGCTGGGAGGAA
AGAACAGGCATGCGCACCTGGCCGAGAAAGGAAAAAGCGCCATAA
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Coding sequence (CDS) from alignment at C-linearis_contig11:796984..799178+

>mRNA_C-linearis_contig11.1192.1 ID=mRNA_C-linearis_contig11.1192.1|Name=mRNA_C-linearis_contig11.1192.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at C-linearis_contig11:796984..799178+ (Chordaria linearis ClinC8C monoicous)
ATGGCGGCTTCAGCCACCGAGCAGTTCCGCCCTTGCCGAAGGGTGCTCAC
CCCTGGCTTTTCAGGGGCGAACCATCCTCGCGCGCAGGGACTGCTGAGGA
TTGAACCGACCCCACGGACCACTCCGAGGCCTACAGGCTTGCGTACGAAT
GCAGAGGCGTCGCGCCGATCGGGGTATGACATCCCCGACCCCGGGCTTGT
GATGGCGGCTTCAGCCACCGAGCAGTTCCGCCCTTGCCGAAGGGTGCTCA
CCCCTGGCTTTTCAGGGGCGAACCATCCTCGCGCGCAGGGACTGCTGAGG
ATTGAACCGACCCCACGGACCACTCCGAGGCCTACAGGCTTGCGTACGAA
TGCAGAGGCGTCGCGCCGATCGGGGTATGACATCCCCGACCCCGGGCTTG
TGCTGCAATCGAAGCACGTGGTGGTGATGGACGACACAGGACGAGCCGCC
AAGGAACGTGTTTCAGGAGAACTCACCTTGGAGAAAGCCTTCGCTGCAAT
CGAAGCACGTGGTGGTGATGGACGACACAGGACGAGCCGCCAAGGAACGT
GTTTCAGGAGAACTCACCTTGGAGAAAGCCTTCGGGTTGAAGCGCAAGGT
TAACTCGCAGCGGGAAAGGCGAGGAGGCGTGCCTGCCAAGGGAAACCCTG
GAGACAAGCTGTTCCATCACGTGGACTACTCGCCAGGGTTCCATGAAAAC
GGGGAGCTCATCGTCGGGAGCTCGTTTTACAGGGTTGAAGCGCAAGGTTA
ACTCGCAGCGGGAAAGGCGAGGAGGCGTGCCTGCCAAGGGAAACCCTGGA
GACAAGCTGTTCCATCACGTGGACTACTCGCCAGGGTTCCATGAAAACGG
GGAGCTCATCGTCGGGAGCTCGTTTTACAGAAGCATGCCTCGTCGCGGTG
AAGGGCGCACTGCCCTAGGGGAAGTCACTGCTCCCGCGACCATTCCAGGT
GACCTTGGATACGCTCTCCAATACCGGAAGCCAAAAATGGCGTTCCACGA
GACTCGACAGGCACTGGGTTATCTAGAAGATCTGCGAGCGGTGCTTGAGC
TCACAAAGCATGCCTCGTCGCGGTGAAGGGCGCACTGCCCTAGGGGAAGT
CACTGCTCCCGCGACCATTCCAGGTGACCTTGGATACGCTCTCCAATACC
GGAAGCCAAAAATGGCGTTCCACGAGACTCGACAGGCACTGGGTTATCTA
GAAGATCTGCGAGCGGTGCTTGAGCTCACAGAGGCCGCGCCCGCGCCGTC
AACAACCGGCGGCCCAGATGAGGGGGTGAGCTGGGAGGAAAGAACAGGCA
TGCGCACCTGGCCGAGAAAGGAAAAAGCGCCATAAGAGGCCGCGCCCGCG
CCGTCAACAACCGGCGGCCCAGATGAGGGGGTGAGCTGGGAGGAAAGAAC
AGGCATGCGCACCTGGCCGAGAAAGGAAAAAGCGCCATAA
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