prot_C-linearis_contig11.1164.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1164.1
Unique Nameprot_C-linearis_contig11.1164.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length257
Homology
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Match: D8LKM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM1_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 5.140e-43
Identity = 113/155 (72.90%), Postives = 122/155 (78.71%), Query Frame = 0
Query:    1 MSEDAAERRKRLKALKDKATNKSIKFRNYRPQDAAIKQQALDSK-------GKGGGEASSGATASSVNARKVD----EEXXXXXXXXXXXXXATAPSLIQQELKRQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMTE 144
            MSE  AERR RLKALK+KA NKSIKFRNYRPQDAAI+QQALDS        G G G A+ G  A+S + + +       XXXXXXXXXXXXXA   SLIQQELK+QKETQDE ELNIAPKKANWDLKRDVEKKLEKL+RRTQRAIVEIIRERM E
Sbjct:    1 MSESGAERRSRLKALKEKA-NKSIKFRNYRPQDAAIRQQALDSSKAGEPTSGSGSGGANKGEGAASPSGKSMGGXXXXXXXXXXXXXXXXXXAPESSLIQQELKKQKETQDEGELNIAPKKANWDLKRDVEKKLEKLDRRTQRAIVEIIRERMAE 154          
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Match: A0A7S2W1E1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1E1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.240e-15
Identity = 64/147 (43.54%), Postives = 85/147 (57.82%), Query Frame = 0
Query:    3 EDAAERRKRLKALKDKATNKSIKFRNYRPQDAAIKQQALDSK------GKGGGEASSGATASSVNARKVDEEXXXXXXXXXXXXXATAPSLIQQELKRQKETQDEEE-LNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERM 142
            E A  RRKRL+ +     +K +KFRNYRPQD  +K +A+ +        +   + +    ASSV +RK                   A ++IQQELK     Q  EE LNIAP+K NWDLKRDV KK+EKLN+RTQ AIV++I+ER+
Sbjct:    8 ESAEARRKRLRTMAAGGASK-LKFRNYRPQDTDLKTKAVAAALPKPILDEVQAQPAPDKDASSVQSRK-------------------ATAVIQQELKEHVAEQGGEEVLNIAPRKPNWDLKRDVAKKMEKLNKRTQLAIVDLIKERI 134          
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Match: A0A835ZFC6_9STRA (Cwf18 pre-mRNA splicing factor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.890e-13
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 0
Query:   86 SLIQQELKRQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMTE 144
            S+I+QEL++ K+ QDE  LNIAP+K +WDLKRD   KLEKLNRRTQRAIV+I+RE+M E
Sbjct:   86 SIIKQELRKVKDGQDEGTLNIAPRKPDWDLKRDAAPKLEKLNRRTQRAIVQILREKMAE 144          
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Match: A0A8H7VG57_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VG57_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 7.820e-13
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 0
Query:    1 MSEDAAERRKRLKALKDKATNK---SIKFRNYRPQDAAIKQQALDSKGKGGGEASSGATASSVNARKVDEEXXXXXXXXXXXXXATAPSLIQQELKRQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMT 143
            M ++A  R++RL AL+ + T     S+KFR+Y P D  +KQQ                    V    + E              A A          ++E ++ + +N+ PKK NWDLKRDVEKKLEKL+RRTQRAI+EIIR+R++
Sbjct:    1 MEKEAQNRKERLAALRKRKTESGSDSLKFRSYTPTDENLKQQTQI-----------------VTPDDIGETVESQTKDFTKEALAAAA---------EQEKEEVDLINLQPKKPNWDLKRDVEKKLEKLDRRTQRAILEIIRQRLS 120          
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Match: A0A1X2IBU1_9FUNG (mRNA splicing factor n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IBU1_9FUNG)

HSP 1 Score: 73.6 bits (179), Expect = 1.370e-12
Identity = 55/156 (35.26%), Postives = 78/156 (50.00%), Query Frame = 0
Query:    1 MSEDAAERRKRLKALK-------------DKATNKSIKFRNYRPQDAAIKQQALDSKGKGGGEASSGATASSVNARKVDEEXXXXXXXXXXXXXATAPSLIQQELKRQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMT 143
            M E+A  R+ RL+A++             D  + K +KFR+Y P D  +KQ                 + ++ N  K+  E             A            +KE +D +  N+APKKANWDL+RDVEKKLEKL+RRTQ+AI+E IR+R+T
Sbjct:    1 MEEEARRRKDRLEAIRKRKQASAPSNTRVDDESIKDLKFRSYTPTDENLKQHV---------------SIATPNHIKITAETETKEIPTQTLAEAA-----------EKEKEDVDLFNLAPKKANWDLRRDVEKKLEKLDRRTQKAILETIRQRLT 130          
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Match: A0A7M7R953_APIME (coiled-coil domain-containing protein 12 n=14 Tax=Apoidea TaxID=34735 RepID=A0A7M7R953_APIME)

HSP 1 Score: 72.0 bits (175), Expect = 4.660e-12
Identity = 57/159 (35.85%), Postives = 78/159 (49.06%), Query Frame = 0
Query:    1 MSEDAAERRKRLKALKDKAT----NKSI--------KFRNYRPQDAAIKQQALDSKGKGGGEASSGATASSVNARKVDEEXXXXXXXXXXXXXATAPSLIQQELKRQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMTEVCH 147
            + E+A +R++RL+ALK K      NKS         KFR+Y+PQD ++K + L+    G  E       S+ N + V EE                                    N+AP+K +WDLKRDV KKLEKL RRTQ+AI E+IRER+ +  H
Sbjct:    9 LEEEALKRKERLQALKKKTEENKENKSESASKLPKPKFRSYKPQDESLKDKVLEDAKPGNVEEEVKDQLSAANTKVVIEELDIS--------------------------------NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRERLKQGQH 135          
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Match: A0A0K8TK94_TABBR (Putative cwf18 pre-mrna splicing factor (Fragment) n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TK94_TABBR)

HSP 1 Score: 70.9 bits (172), Expect = 4.960e-12
Identity = 53/142 (37.32%), Postives = 74/142 (52.11%), Query Frame = 0
Query:    1 MSEDAAERRKRLKALKDKATNKSIKFRNYRPQDAAIKQQALDSKGKGGGEASSGATASSVNARKVDEEXXXXXXXXXXXXXATAPSLIQQELKRQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERM 142
            + E++ +R++RLK L+ KA N  I FR+Y+PQD  I +Q L++K                  R  DE                 P +I+          D +  N+AP+K +WDLKRDV KKLEKL RRTQ+ I E+IRER+
Sbjct:    3 LEEESLKRKERLKNLRKKAENTPI-FRSYKPQDKTINEQILENK---------------TVVRLEDE-------VKDQLEILKTPIVIE----------DIDIANLAPRKPDWDLKRDVAKKLEKLERRTQKTIAELIRERL 111          
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Match: A0A6J0BK06_NEOLC (coiled-coil domain-containing protein 12 n=3 Tax=Diprioninae TaxID=410274 RepID=A0A6J0BK06_NEOLC)

HSP 1 Score: 72.0 bits (175), Expect = 5.670e-12
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 0
Query:    1 MSEDAAERRKRLKALKDKATNKSI-------------KFRNYRPQDAAIKQQALDSKGKGGGEASSGATASSVNARKVDEEXXXXXXXXXXXXXATAPSLIQQELKRQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMTE 144
            + ++A +R++RL+ALK K T+++              KFR+Y+PQD ++++Q LD    G  E+      S+ N++ V EE                                    ++AP+K +WDLKRDV KKLEKL RRTQ+AI E+IRER+ +
Sbjct:    9 LEDEALKRKERLQALKRKITDENKEQGKSEGSTLPKPKFRSYKPQDDSLREQVLDEAKPGDVESEVKDQLSAANSKVVIEELDIS--------------------------------SLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRERLKQ 133          
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Match: UPI001C9A69AC (coiled-coil domain-containing protein 12 n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9A69AC)

HSP 1 Score: 71.6 bits (174), Expect = 6.470e-12
Identity = 57/159 (35.85%), Postives = 78/159 (49.06%), Query Frame = 0
Query:    1 MSEDAAERRKRLKALK----DKATNKSI--------KFRNYRPQDAAIKQQALDSKGKGGGEASSGATASSVNARKVDEEXXXXXXXXXXXXXATAPSLIQQELKRQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMTEVCH 147
            + E+A +R++RL+ALK    D   NK+         KFR+Y+PQD ++K + LD    G  EA      S+   + V EE                                    N+AP+K +WDLKRDV KKLEKL RRTQ+AI E+IRER+ +  H
Sbjct:    9 LEEEALKRKERLQALKRKTEDNKENKAEGGIKLPKPKFRSYKPQDESLKGKVLDDAKPGNVEAEVHDQLSAATTKVVIEELDIS--------------------------------NLAPRKPDWDLKRDVAKKLEKLERRTQKAIAELIRERLKQGQH 135          
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Match: UPI00073D605B (coiled-coil domain-containing protein 12 n=3 Tax=Polistes TaxID=7456 RepID=UPI00073D605B)

HSP 1 Score: 71.6 bits (174), Expect = 6.610e-12
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 0
Query:    3 EDAAERRKRLKALKDK-ATNKSIK-----------FRNYRPQDAAIKQQALDSKGKGGGEASSGATASSVNARKVDEEXXXXXXXXXXXXXATAPSLIQQELKRQKETQDEEEL---NIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMTEVCH 147
            E+A +R++RL+ALK K    K IK           FR+Y+PQD ++K++ L+                  NA+  D E                 S +Q +L   K     EEL   N+AP+K +WDLKRDV KKLEKL RRTQ+AI E+IRER+ +  H
Sbjct:   11 EEALKRKERLQALKKKNEEGKDIKTDTPSKLPMPKFRSYKPQDESLKEKVLE------------------NAKPGDVE-----------------SEVQDQLSAAKSKVVIEELDISNLAPRKPDWDLKRDVSKKLEKLERRTQKAIAELIRERLKQGQH 135          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1164.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKM1_ECTSI5.140e-4372.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2W1E1_9STRA1.240e-1543.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835ZFC6_9STRA3.890e-1367.80Cwf18 pre-mRNA splicing factor-domain-containing p... [more]
A0A8H7VG57_9FUNG7.820e-1336.99Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A1X2IBU1_9FUNG1.370e-1235.26mRNA splicing factor n=1 Tax=Absidia repens TaxID=... [more]
A0A7M7R953_APIME4.660e-1235.85coiled-coil domain-containing protein 12 n=14 Tax=... [more]
A0A0K8TK94_TABBR4.960e-1237.32Putative cwf18 pre-mrna splicing factor (Fragment)... [more]
A0A6J0BK06_NEOLC5.670e-1233.76coiled-coil domain-containing protein 12 n=3 Tax=D... [more]
UPI001C9A69AC6.470e-1235.85coiled-coil domain-containing protein 12 n=1 Tax=C... [more]
UPI00073D605B6.610e-1237.50coiled-coil domain-containing protein 12 n=3 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..22
NoneNo IPR availableCOILSCoilCoilcoord: 116..136
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 197..207
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 226..256
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 208..225
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..174
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 175..196
NoneNo IPR availableTMHMMTMhelixcoord: 207..229
NoneNo IPR availableTMHMMTMhelixcoord: 170..192
IPR013169mRNA splicing factor, Cwf18PFAMPF08315cwf18coord: 1..142
e-value: 1.3E-21
score: 77.7
IPR013169mRNA splicing factor, Cwf18PANTHERPTHR31551FAMILY NOT NAMEDcoord: 15..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:399256..401387 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1164.1mRNA_C-linearis_contig11.1164.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 399160..403167 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1164.1 ID=prot_C-linearis_contig11.1164.1|Name=mRNA_C-linearis_contig11.1164.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=257bp
MSEDAAERRKRLKALKDKATNKSIKFRNYRPQDAAIKQQALDSKGKGGGE
ASSGATASSVNARKVDEEEEEGEGGGEGKRKATAPSLIQQELKRQKETQD
EEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMTEVCHAPP
LLFSRACFFLSRRFASAEIFLAHHLQAWSCLVFLSTVQAFFVQCFVWRAF
VYAQIPRVLGGCIASLCLCLVSLPLSPSLSSRRPCVRDEWLKHIYSGTAC
YWYAAC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013169mRNA_splic_Cwf18