prot_C-linearis_contig11.1154.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1154.1
Unique Nameprot_C-linearis_contig11.1154.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length204
Homology
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Match: D8LKK4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKK4_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 1.810e-105
Identity = 176/203 (86.70%), Postives = 185/203 (91.13%), Query Frame = 0
Query:    1 MSRRRVVLKQQKPQGGGMQAAMKEMANLEEGMPAPYIPPNKNTLYVKPPEALRSMDVSKLIVIWPNNVDSTRTIKKGRRIPKASGCPSPTVEDMSHVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMGELMPNLKSRRDRLAKEQKDKXXXXXXXXXXXXXXXXXXXXXNVKKKGKKKGKR 203
            MSRRRVV+KQQKPQGGGMQAAMKEMAN E+GMP PYIPP+KN+LYV+P EALR MDVSKLIVIWPNNVDSTRTIK+GRRIPKASGCPSPTVEDMS VLEFLQLWHAVEPYKAYPREPWVLGRVRVRL DEDGVPWNPEVPDRPSLMKKMGELMPNLKSR DR++K +KD     XXXXXXXXXXXXXXXXX     GKKKGKR
Sbjct:    1 MSRRRVVVKQQKPQGGGMQAAMKEMANFEDGMPTPYIPPDKNSLYVRPAEALRRMDVSKLIVIWPNNVDSTRTIKRGRRIPKASGCPSPTVEDMSQVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLADEDGVPWNPEVPDRPSLMKKMGELMPNLKSRIDRISKAKKDAEALAXXXXXXXXXXXXXXXXXXXXXXGKKKGKR 203          
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Match: A0A836CKP4_9STRA (Signal recognition particle, SRP19 subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKP4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.510e-37
Identity = 69/153 (45.10%), Postives = 102/153 (66.67%), Query Frame = 0
Query:   18 MQAAMKEMANLEEGMPAPYIPPNKNTLYVKPPEALRSMDVSKLIVIWPNNVDSTRTIKKGRRIPKASGCPSPTVEDMSHVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMGELMPNLKSRRDRLAKEQKDK 170
            M A MK M + ++ +P P   P+K   Y+ P + +  +D SK IV+WPN +D  +TI +GRR+ K   C  P V ++  + +   LW+A+EP+K YPREP+VLGRVRVR+   DG P +P++PD+ +L+KKMG L+PNL  R+DRL +  K+K
Sbjct:    1 MAALMKSMEDEQQELPPP---PDKTLSYLWPDD-MGEVDASKWIVVWPNYIDKAKTIAQGRRVAKEFACDIPIVIELGAICQAFNLWYALEPFKGYPREPYVLGRVRVRVTMPDGTPAHPDIPDKVALLKKMGTLIPNLHIRKDRLLQMSKEK 149          
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Match: A0A7S2B120_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B120_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.820e-32
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 0
Query:   39 PNKNTLYVKPPEALRSMDVSKLIVIWPNNVDSTRTIKKGRRIPKASGCPSPTVEDMSHVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMGELMPNLKSRRDRL 163
            PN NT    PP     +D +K I +WP+N++S RT+ KGRR+P +  C  P V +MS VL+F +L H +EPYK YPR+    GRV+V+L DED  P + EVP R  LM KMGEL+P LK R  R+
Sbjct:   37 PNPNTKISWPPSMAGKLDDAKFICVWPSNINSKRTLAKGRRVPISHSCEDPIVAEMSEVLQFYKLNHVIEPYKCYPRDWTYPGRVKVKLFDEDDQPCSEEVPSRRVLMMKMGELIPKLKIRNKRM 161          
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Match: A0A6V2W292_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2W292_HETAK)

HSP 1 Score: 118 bits (296), Expect = 2.730e-29
Identity = 56/108 (51.85%), Postives = 76/108 (70.37%), Query Frame = 0
Query:   56 DVSKLIVIWPNNVDSTRTIKKGRRIPKASGCPSPTVEDMSHVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMGELMPNLKSRRDRL 163
            D S+ I +WPNN++S +T+K+GRRI K   C  P VEDMS V ++LQL H  +PYK YPR+    GR+ VRL  EDG P+NP+VP R +L+ +MG L+P L +R+ RL
Sbjct:  107 DYSRFITLWPNNLNSKKTVKQGRRIGKEQACEDPIVEDMSEVCQYLQLHHVKQPYKGYPRDWLCQGRLLVRLTREDGTPYNPKVPTRRALLVEMGRLIPKLSNRQRRL 214          
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Match: A0A7S2SLH7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLH7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.630e-28
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 0
Query:   37 IPPNKNTLYVKPPEALRSMDVSKLIVIWPNNVDSTRTIKKGRRIPKASGCPSPTVEDMSHVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMGELMPNLKSRRDRLAKEQ 167
            + P+ NT    P      +D S+ +VIW  N++ +  + +GRRIP AS C  P V +MS VL+  +L H +EP+K YPR   V GRVRV+L+D++  P NPEVP R  LM +MGEL+P LK R  R+A +Q
Sbjct:   36 VAPDPNTKITWPQSLAGKIDDSRFLVIWTININRSFKLSEGRRIPIASACEDPIVAEMSEVLQHFKLTHVIEPFKVYPRV-MVPGRVRVKLIDDEDQPCNPEVPTRRVLMMRMGELIPKLKIRSQRIAMQQ 165          
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Match: A0A8J5IME7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IME7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.020e-27
Identity = 53/112 (47.32%), Postives = 80/112 (71.43%), Query Frame = 0
Query:   58 SKLIVIWPNNVDSTRTIKKGRRIPKASGCPSPTVEDMSHVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMGELMPNLKSRRDRLAKEQKD 169
            S  +  +PN +D+ +T+++GRRIPK + C +P  ++MS V  + +L H +EP K YPR+  V GR+RVRLV +DG P NP++P+R +LM KM EL+P L+SR+ RL KE ++
Sbjct:   54 SSFMTFYPNYIDNKKTVQQGRRIPKQNACEAPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRDDGSPENPDIPNRKTLMIKMAELIPKLQSRKVRLEKEAEE 165          
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Match: M4BW27_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BW27_HYAAE)

HSP 1 Score: 110 bits (276), Expect = 5.240e-27
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 0
Query:   58 SKLIVIWPNNVDSTRTIKKGRRIPKASGCPSPTVEDMSHVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMGELMPNLKSRRDRLAKEQKD 169
            S     +PN +DS RT+++GRRIPK+  C +P  ++MS V  FL+L H +EP K YPR+  V GR+RVRLV EDG   NPE+P+R +L+ KM +L+P L+SR+ RL KE ++
Sbjct:   52 SMFYTFYPNYLDSKRTVQQGRRIPKSMACEAPIADEMSEVCTFLKLPHVLEPTKKYPRDWLVAGRIRVRLVREDGSLENPELPNRKALILKMADLIPKLQSRKVRLEKEAEE 163          
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Match: A0A067CX32_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CX32_SAPPC)

HSP 1 Score: 110 bits (276), Expect = 5.400e-26
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 0
Query:   56 DVSKLIVIWPNNVDSTRTIKKGRRIPKASGCPSPTVEDMSHVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMGELMPNLKSRRDRLAKEQKDKXXXXXXXXXXXXXXXXXXXXXNVKKKGKKKGKR 203
            D S+    +PN +DS +T   GRRIPKA  C  P VE+M+ V  + +L H  EPYKAY R+  V GRVRV+LVD +G P + E+  R  LM KMGEL+P L+ R+DRLA+E +                       + KKKGKKKG+R
Sbjct:  155 DFSRWATFYPNYIDSGKTNADGRRIPKAMACDRPIVEEMAEVCRYFKLDHVTEPYKAYSRDFLVPGRVRVKLVDANGSPVHAEIRTRKDLMLKMGELIPKLQLRKDRLARELE-------AAKAATTGAPATGAAASSKKKGKKKGRR 295          
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Match: A0A6A3TTV6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TTV6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.670e-26
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 0
Query:   60 LIVIWPNNVDSTRTIKKGRRIPKASG--CPSPTVEDMSHVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMGELMPNLKSRRDRLAKEQKD 169
            L+  +PN +DS +T+++GRRIP+A    C +P  ++MS V  +L+L H +EP K YPR+  V GRVRVRLV +DG P NPEVP R +LM KM EL+P L+SR+ RL +E ++
Sbjct:  124 LMTFYPNYIDSKKTVQQGRRIPQAQAQACETPLADEMSEVCTYLKLPHVLEPAKKYPRDWLVSGRVRVRLVRDDGSPENPEVPTRKALMVKMAELIPKLQSRKLRLEREAEE 235          
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Match: D0MUF1_PHYIT (Transmembrane protein, putative n=13 Tax=Phytophthora TaxID=4783 RepID=D0MUF1_PHYIT)

HSP 1 Score: 108 bits (271), Expect = 1.700e-25
Identity = 52/112 (46.43%), Postives = 78/112 (69.64%), Query Frame = 0
Query:   58 SKLIVIWPNNVDSTRTIKKGRRIPKASGCPSPTVEDMSHVLEFLQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMGELMPNLKSRRDRLAKEQKD 169
            S  +  +PN +D  +T+++GRRIPK S C +P  ++MS V  + +L H +EP K YPR+  V GR+RVRL+ +DG P N ++P+R +LM KM EL+P L+SR+ RL KE ++
Sbjct:  129 STFMTFYPNYIDDKKTVQQGRRIPKLSACEAPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLLRDDGTPENADIPNRKTLMIKMAELIPKLQSRKVRLEKEAEE 240          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1154.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKK4_ECTSI1.810e-10586.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKP4_9STRA1.510e-3745.10Signal recognition particle, SRP19 subunit n=1 Tax... [more]
A0A7S2B120_9STRA4.820e-3249.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6V2W292_HETAK2.730e-2951.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SLH7_9STRA3.630e-2845.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5IME7_9STRA2.020e-2747.32Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
M4BW27_HYAAE5.240e-2750.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A067CX32_SAPPC5.400e-2644.59Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6A3TTV6_9STRA5.670e-2650.89Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
D0MUF1_PHYIT1.700e-2546.43Transmembrane protein, putative n=13 Tax=Phytophth... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002778Signal recognition particle, SRP19 subunitPFAMPF01922SRP19coord: 62..154
e-value: 2.6E-22
score: 79.6
IPR002778Signal recognition particle, SRP19 subunitPANTHERPTHR17453SIGNAL RECOGNITION PARTICLE 19 KD PROTEINcoord: 18..202
IPR036521Signal recognition particle, subunit SRP19-like superfamilyGENE3D3.30.56.30coord: 49..170
e-value: 9.9E-31
score: 108.5
IPR036521Signal recognition particle, subunit SRP19-like superfamilySUPERFAMILY69695SRP19coord: 53..158
NoneNo IPR availablePANTHERPTHR17453:SF0SIGNAL RECOGNITION PARTICLE 19 KDA PROTEINcoord: 18..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:125746..129184 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1154.1mRNA_C-linearis_contig11.1154.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 125666..129861 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1154.1 ID=prot_C-linearis_contig11.1154.1|Name=mRNA_C-linearis_contig11.1154.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=204bp
MSRRRVVLKQQKPQGGGMQAAMKEMANLEEGMPAPYIPPNKNTLYVKPPE
ALRSMDVSKLIVIWPNNVDSTRTIKKGRRIPKASGCPSPTVEDMSHVLEF
LQLWHAVEPYKAYPREPWVLGRVRVRLVDEDGVPWNPEVPDRPSLMKKMG
ELMPNLKSRRDRLAKEQKDKEASARAEKEKAAAAIAAASQSNVKKKGKKK
GKR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002778Signal_recog_particle_SRP19
IPR036521SRP19-like_sf