prot_C-linearis_contig109.1140.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig109.1140.1
Unique Nameprot_C-linearis_contig109.1140.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length327
Homology
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: D7G2P6_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P6_ECTSI)

HSP 1 Score: 397 bits (1021), Expect = 5.030e-136
Identity = 196/229 (85.59%), Postives = 209/229 (91.27%), Query Frame = 0
Query:    8 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKEDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGQEAEWRE 236
            RRNTPRGQMSMGKGGPAIQMMEG M+ MF PP PLEFKKSVCKR PP ++G+AAMLKGK   +LFEKG PPPPEKFETPRQ+HARIAAAKK+ DEEGLK KI  WNPK+D K KGDAYKTLF+AKISYDTTEKKLR+EFEQ+G I S+RMVQDEDGKPRGYAFVEYENEDDMR+AYKRGDGRKIDGRRV VDVERGRTVRNWLPRRFGGGLGDSRKERPKKG EAEWRE
Sbjct:    3 RRNTPRGQMSMGKGGPAIQMMEGAMRAMFEPPPPLEFKKSVCKRKPPTVEGVAAMLKGKGAANLFEKGVPPPPEKFETPRQKHARIAAAKKKTDEEGLKDKISKWNPKDDPKTKGDAYKTLFIAKISYDTTEKKLRREFEQFGRIQSIRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGHEAEWRE 231          
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: H6WBA2_VAULI (RRM domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA2_VAULI)

HSP 1 Score: 249 bits (635), Expect = 1.160e-77
Identity = 132/225 (58.67%), Postives = 166/225 (73.78%), Query Frame = 0
Query:    8 RRNTPRGQMSMGKG-GPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKEDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGQE 231
            R NTPRG MS G+  GPA+ M+   +K MF P  PL +K  + KR  P + G+   +K KD   +FEK PPPP   +ETP+QRHAR+  AK   +E  ++ +I  WNPK+D  A GDAYKTLFVA +SYDT+EKKLR+EFEQYG I  +R+V D + +PRGYAF+EYE E+DM +AYK+ DGRK+D RR+ VDVERGRTVRNW PRRFGGGLG+SRK +PKKG+E
Sbjct:    3 RLNTPRGYMSQGRNSGPALGMLPPDLKPMFDPRPPLLWKPPINKRVAPYVTGL---VKYKD---VFEKIPPPPIIPYETPKQRHARLREAKIRENEAKIEREIKKWNPKKDPNATGDAYKTLFVANMSYDTSEKKLRREFEQYGQIKKIRLVNDLEDQPRGYAFIEYEREEDMHMAYKKADGRKVDSRRLLVDVERGRTVRNWRPRRFGGGLGESRKTKPKKGEE 221          
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A7S2Y0A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A0_9STRA)

HSP 1 Score: 221 bits (563), Expect = 6.350e-67
Identity = 119/219 (54.34%), Postives = 151/219 (68.95%), Query Frame = 0
Query:    7 GRRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKEDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKER 225
            GRR TP+G MS    GPAI  +   +K MF P  P+E K  + KR  P + G+A+ +       LFEK  PPP + +ETP+QR AR+  A  +A+ E L      ++P  +  A  DAYKTLF++++SYDTTEKKLR+EFEQYGPI +LR++ D + KPRGYAF+EY+ E DMR+AYKR DG KIDGRRV VDVERGRTVR W PRR GGGLG +RK +
Sbjct:    3 GRRMTPKGMMSGNGSGPAIAHLPPGLKAMFDPRPPMEHKPPIIKRKMPSLAGMASYV------DLFEKTEPPPRQIYETPKQRQARVRDATMKANNEALALYAQEFDPHLNPHATEDAYKTLFISRLSYDTTEKKLRREFEQYGPIRNLRIILDLNDKPRGYAFIEYDRESDMRMAYKRADGCKIDGRRVLVDVERGRTVRGWCPRRLGGGLGGTRKSK 215          
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A8K1CMI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMI4_PYTOL)

HSP 1 Score: 218 bits (554), Expect = 2.570e-65
Identity = 115/220 (52.27%), Postives = 150/220 (68.18%), Query Frame = 0
Query:    8 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKE-DKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERP 226
            R+ TP+GQMS    GPAI  +   +K +F P  PLE    + KR  P   G+    +       FE   PPP E  ETP++R  R+   K EA E  L+A +  W+P+  D++   DAYKTLFV +ISY+TTEK+LR+EFEQYGP+  +R+++DE+GK RGYAFVEYE E DM++AYK+ DG+KIDGRRV VDVERGRTVR W PR+FGGG+G++RK  P
Sbjct:    5 RKMTPKGQMSSSGMGPAIVHLPPHLKALFEPNPPLEHLPQLTKRKMPPYSGLTEFAE------TFETAQPPPREVSETPKERRERVRKEKVEAHEAQLQANLEKWDPQAADERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLIEDEEGKSRGYAFVEYEKESDMKVAYKQADGKKIDGRRVVVDVERGRTVREWKPRKFGGGIGETRKGGP 218          
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A5D6XVV7_9STRA (RRM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVV7_9STRA)

HSP 1 Score: 214 bits (546), Expect = 6.250e-64
Identity = 116/220 (52.73%), Postives = 148/220 (67.27%), Query Frame = 0
Query:    8 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKE-DKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERP 226
            R+ TP+GQMS    GPAI  +   +K +F P  PLEF+  + KR  P   GIAA  +       FE   PPP E  ETP++R  R+ A +    +  + A    W+P   D++   DAYKTLFV +ISY+TTEK+LR+EFEQYGP+   R+V+D DGK RGY FVEYENE D++ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK  P
Sbjct:   14 RKMTPKGQMSNSGMGPAISHLPVHLKALFEPNAPLEFRPKLVKRKMPPYSGIAAFAE------QFEAEAPPPREVSETPKERRERVRAERMAKADAEMLANKEKWDPNAPDERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKRARLVEDPDGKSRGYGFVEYENESDLKAAYKLADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRKGGP 227          
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: K3X2C0_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2C0_GLOUD)

HSP 1 Score: 213 bits (542), Expect = 1.480e-63
Identity = 114/217 (52.53%), Postives = 151/217 (69.59%), Query Frame = 0
Query:    8 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPK-EDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 223
            R+ TP+GQMS    GPAI  +   +K +F P  PLEFK  + KR  P  +GIA+ L   + E+      PP     ETP++R  R+ A +   ++  ++A    W+P  ED +   DAYKTLFV +ISY+TTEK+LR+EFEQYGP+  +R+V+DE+GK RGY FVEYENE D++ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:    7 RKMTPKGQMSGSGMGPAISHLPVHLKALFEPNAPLEFKPKLVKRKMPPYEGIASFLDQMETEA------PPSRVVSETPKERKERLRAERMARNDAEMQANREKWDPNAEDARKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKVRLVEDEEGKSRGYGFVEYENESDLKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 217          
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A2D4BHZ3_PYTIN (RRM domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ3_PYTIN)

HSP 1 Score: 210 bits (535), Expect = 2.400e-62
Identity = 112/217 (51.61%), Postives = 147/217 (67.74%), Query Frame = 0
Query:    8 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKE-DKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 223
            R+ TP+GQMS    GPAI  +   +K +F P  PL     + KR  P   G+   +      + FE   PPP    ETP++R AR+   K    E  L+A+I  W+P+  D++   DAYKTLFV +ISY+TTEK+LR+EFEQYGP+  +R+V+DEDGK RGYAF+EYE E DM+ AYK+ DG+KIDGRRV VDVERGRTVR+W PR+ GGG+G++RK
Sbjct:    5 RKMTPKGQMSSSGMGPAITHLPPHLKALFEPNAPLPHLPQLTKRKMPPYSGVTDFV------AQFETEAPPPRVLNETPKERQARLQKEKAAEMEAKLQAEISKWDPQHADERKTDDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLVEDEDGKSRGYAFIEYERESDMKAAYKQADGKKIDGRRVVVDVERGRTVRDWKPRKLGGGIGETRK 215          
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A6G0M502_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M502_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.760e-62
Identity = 114/217 (52.53%), Postives = 144/217 (66.36%), Query Frame = 0
Query:    8 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPK-EDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 223
            R+ TP+GQMS    GPAI  +   +K MF P  PL+    + KR  P   G+AA L        FE   PPP    ETP++R  R    K  A E  ++     W+P  ED +   DAYKTLFV +ISY+TTE++LR EFEQYGP+ S+R+V+D +GK RGY FVEYE E+DM+ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:    8 RKMTPKGQMSSSGMGPAIMHLPTHLKVMFEPNAPLDHLPRLVKRKMPPYTGLAAFL------DAFESETPPPRAVQETPKERRERRRQEKMAAVEAKMQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 218          
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A6A3TRP9_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3TRP9_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.210e-62
Identity = 114/217 (52.53%), Postives = 144/217 (66.36%), Query Frame = 0
Query:    8 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPK-EDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 223
            R+ TP+GQMS    GPAI  +   +K MF P  PL+    + KR  P   G+AA L        FE   PPP    ETP++R  R    K  A E  ++     W+P  ED +   DAYKTLFV +ISY+TTE++LR EFEQYGP+ S+R+V+D +GK RGY FVEYE E+DM+ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:    8 RKMTPKGQMSSSGMGPAIMHLPTHLKVMFEPNAPLDHLPRLVKRKMPPYTGLAAFL------DAFESETPPPRAVQETPKERRERRRQEKMAAVEAKMQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 218          
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A4D9D1Y9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Y9_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.330e-62
Identity = 116/219 (52.97%), Postives = 148/219 (67.58%), Query Frame = 0
Query:    5 GGGRRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKEDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 223
            GG R  TP+GQMS     PAI  +   M+ MF P  P+EF +   K  P    GI+          LFE   PP  E+F + ++R A   AA  +   E ++ ++  W+PK+D+KA  D YKTL VA++SYDTTEKKLR+EFEQYGPI S+R+V D DGKPRGYAF+E+E E DM++AYKR DG+KIDGRR+ VDVERGRTV+ W+PRR GGGLG +RK
Sbjct:   27 GGVRLVTPKGQMSGSNMPPAITGLPQNMRAMFEPRPPVEFLRLAPKPPPRPYTGISQYA------GLFETDEPPARERFLSYKERKAAERAAFMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVTDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRK 239          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P6_ECTSI5.030e-13685.59RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
H6WBA2_VAULI1.160e-7758.67RRM domain-containing protein n=1 Tax=Vaucheria li... [more]
A0A7S2Y0A0_9STRA6.350e-6754.34Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8K1CMI4_PYTOL2.570e-6552.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XVV7_9STRA6.250e-6452.73RRM domain-containing protein n=1 Tax=Pythium bras... [more]
K3X2C0_GLOUD1.480e-6352.53RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A2D4BHZ3_PYTIN2.400e-6251.61RRM domain-containing protein n=1 Tax=Pythium insi... [more]
A0A6G0M502_9STRA2.760e-6252.53RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6A3TRP9_9STRA3.210e-6252.53RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A4D9D1Y9_9STRA3.330e-6252.97RRM domain-containing protein n=1 Tax=Nannochlorop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 235..272
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 33..324
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 127..199
e-value: 4.5E-25
score: 99.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 128..196
e-value: 5.2E-20
score: 71.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 126..203
score: 19.365
IPR022023U1 small nuclear ribonucleoprotein of 70kDa N-terminalPFAMPF12220U1snRNP70_Ncoord: 34..117
e-value: 1.4E-11
score: 44.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 113..237
e-value: 6.7E-33
score: 115.5
IPR040252U1 small nuclear ribonucleoprotein 70kDaPANTHERPTHR13952:SF5U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDAcoord: 33..324
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 112..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:510608..514919 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1140.1mRNA_C-linearis_contig109.1140.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig109 510449..515738 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig109.1140.1 ID=prot_C-linearis_contig109.1140.1|Name=mRNA_C-linearis_contig109.1140.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=327bp
MAMMGGGRRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCK
RTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEA
DEEGLKAKIGTWNPKEDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYG
PINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDV
ERGRTVRNWLPRRFGGGLGDSRKERPKKGQEAEWRERERREAEAKEAERE
AKREKERQEERARRDREREERDRSRGVDDKDDGGGGGGKRADSRERGRRG
GSRDRSRSRDGSRDRRRRSRSRDRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR022023U1snRNP70_N
IPR012677Nucleotide-bd_a/b_plait_sf
IPR040252SNRNP70
IPR035979RBD_domain_sf