mRNA_C-linearis_contig109.1140.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1140.1
Unique NamemRNA_C-linearis_contig109.1140.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: D7G2P6_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P6_ECTSI)

HSP 1 Score: 398 bits (1022), Expect = 2.400e-131
Identity = 196/229 (85.59%), Postives = 209/229 (91.27%), Query Frame = 1 
Query:  181 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKEDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGQEAEWRE 867
            RRNTPRGQMSMGKGGPAIQMMEG M+ MF PP PLEFKKSVCKR PP ++G+AAMLKGK   +LFEKG PPPPEKFETPRQ+HARIAAAKK+ DEEGLK KI  WNPK+D K KGDAYKTLF+AKISYDTTEKKLR+EFEQ+G I S+RMVQDEDGKPRGYAFVEYENEDDMR+AYKRGDGRKIDGRRV VDVERGRTVRNWLPRRFGGGLGDSRKERPKKG EAEWRE
Sbjct:    3 RRNTPRGQMSMGKGGPAIQMMEGAMRAMFEPPPPLEFKKSVCKRKPPTVEGVAAMLKGKGAANLFEKGVPPPPEKFETPRQKHARIAAAKKKTDEEGLKDKISKWNPKDDPKTKGDAYKTLFIAKISYDTTEKKLRREFEQFGRIQSIRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGHEAEWRE 231
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BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: H6WBA2_VAULI (RRM domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA2_VAULI)

HSP 1 Score: 249 bits (636), Expect = 7.030e-74
Identity = 132/225 (58.67%), Postives = 166/225 (73.78%), Query Frame = 1 
Query:  181 RRNTPRGQMSMGKG-GPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKEDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGQE 852
            R NTPRG MS G+  GPA+ M+   +K MF P  PL +K  + KR  P + G+   +K KD   +FEK PPPP   +ETP+QRHAR+  AK   +E  ++ +I  WNPK+D  A GDAYKTLFVA +SYDT+EKKLR+EFEQYG I  +R+V D + +PRGYAF+EYE E+DM +AYK+ DGRK+D RR+ VDVERGRTVRNW PRRFGGGLG+SRK +PKKG+E
Sbjct:    3 RLNTPRGYMSQGRNSGPALGMLPPDLKPMFDPRPPLLWKPPINKRVAPYVTGL---VKYKD---VFEKIPPPPIIPYETPKQRHARLREAKIRENEAKIEREIKKWNPKKDPNATGDAYKTLFVANMSYDTSEKKLRREFEQYGQIKKIRLVNDLEDQPRGYAFIEYEREEDMHMAYKKADGRKVDSRRLLVDVERGRTVRNWRPRRFGGGLGESRKTKPKKGEE 221
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BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A7S2Y0A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A0_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.950e-63
Identity = 119/219 (54.34%), Postives = 151/219 (68.95%), Query Frame = 1 
Query:  178 GRRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKEDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKER 834
            GRR TP+G MS    GPAI  +   +K MF P  P+E K  + KR  P + G+A+ +       LFEK  PPP + +ETP+QR AR+  A  +A+ E L      ++P  +  A  DAYKTLF++++SYDTTEKKLR+EFEQYGPI +LR++ D + KPRGYAF+EY+ E DMR+AYKR DG KIDGRRV VDVERGRTVR W PRR GGGLG +RK +
Sbjct:    3 GRRMTPKGMMSGNGSGPAIAHLPPGLKAMFDPRPPMEHKPPIIKRKMPSLAGMASYV------DLFEKTEPPPRQIYETPKQRQARVRDATMKANNEALALYAQEFDPHLNPHATEDAYKTLFISRLSYDTTEKKLRREFEQYGPIRNLRIILDLNDKPRGYAFIEYDRESDMRMAYKRADGCKIDGRRVLVDVERGRTVRGWCPRRLGGGLGGTRKSK 215
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BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A8K1CMI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMI4_PYTOL)

HSP 1 Score: 218 bits (555), Expect = 7.170e-62
Identity = 115/220 (52.27%), Postives = 150/220 (68.18%), Query Frame = 1 
Query:  181 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKE-DKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERP 837
            R+ TP+GQMS    GPAI  +   +K +F P  PLE    + KR  P   G+    +       FE   PPP E  ETP++R  R+   K EA E  L+A +  W+P+  D++   DAYKTLFV +ISY+TTEK+LR+EFEQYGP+  +R+++DE+GK RGYAFVEYE E DM++AYK+ DG+KIDGRRV VDVERGRTVR W PR+FGGG+G++RK  P
Sbjct:    5 RKMTPKGQMSSSGMGPAIVHLPPHLKALFEPNPPLEHLPQLTKRKMPPYSGLTEFAE------TFETAQPPPREVSETPKERRERVRKEKVEAHEAQLQANLEKWDPQAADERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLIEDEEGKSRGYAFVEYEKESDMKVAYKQADGKKIDGRRVVVDVERGRTVREWKPRKFGGGIGETRKGGP 218
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BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A5D6XVV7_9STRA (RRM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVV7_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.600e-60
Identity = 116/220 (52.73%), Postives = 148/220 (67.27%), Query Frame = 1 
Query:  181 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKE-DKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERP 837
            R+ TP+GQMS    GPAI  +   +K +F P  PLEF+  + KR  P   GIAA  +       FE   PPP E  ETP++R  R+ A +    +  + A    W+P   D++   DAYKTLFV +ISY+TTEK+LR+EFEQYGP+   R+V+D DGK RGY FVEYENE D++ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK  P
Sbjct:   14 RKMTPKGQMSNSGMGPAISHLPVHLKALFEPNAPLEFRPKLVKRKMPPYSGIAAFAE------QFEAEAPPPREVSETPKERRERVRAERMAKADAEMLANKEKWDPNAPDERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKRARLVEDPDGKSRGYGFVEYENESDLKAAYKLADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRKGGP 227
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BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: K3X2C0_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2C0_GLOUD)

HSP 1 Score: 213 bits (543), Expect = 3.610e-60
Identity = 114/217 (52.53%), Postives = 151/217 (69.59%), Query Frame = 1 
Query:  181 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPK-EDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 828
            R+ TP+GQMS    GPAI  +   +K +F P  PLEFK  + KR  P  +GIA+ L   + E+      PP     ETP++R  R+ A +   ++  ++A    W+P  ED +   DAYKTLFV +ISY+TTEK+LR+EFEQYGP+  +R+V+DE+GK RGY FVEYENE D++ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:    7 RKMTPKGQMSGSGMGPAISHLPVHLKALFEPNAPLEFKPKLVKRKMPPYEGIASFLDQMETEA------PPSRVVSETPKERKERLRAERMARNDAEMQANREKWDPNAEDARKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKVRLVEDEEGKSRGYGFVEYENESDLKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 217
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BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A2D4BHZ3_PYTIN (RRM domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ3_PYTIN)

HSP 1 Score: 211 bits (536), Expect = 5.410e-59
Identity = 112/217 (51.61%), Postives = 147/217 (67.74%), Query Frame = 1 
Query:  181 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKE-DKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 828
            R+ TP+GQMS    GPAI  +   +K +F P  PL     + KR  P   G+   +      + FE   PPP    ETP++R AR+   K    E  L+A+I  W+P+  D++   DAYKTLFV +ISY+TTEK+LR+EFEQYGP+  +R+V+DEDGK RGYAF+EYE E DM+ AYK+ DG+KIDGRRV VDVERGRTVR+W PR+ GGG+G++RK
Sbjct:    5 RKMTPKGQMSSSGMGPAITHLPPHLKALFEPNAPLPHLPQLTKRKMPPYSGVTDFV------AQFETEAPPPRVLNETPKERQARLQKEKAAEMEAKLQAEISKWDPQHADERKTDDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLVEDEDGKSRGYAFIEYERESDMKAAYKQADGKKIDGRRVVVDVERGRTVRDWKPRKLGGGIGETRK 215
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BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A4D9D1Y9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Y9_9STRA)

HSP 1 Score: 211 bits (538), Expect = 5.450e-59
Identity = 116/219 (52.97%), Postives = 148/219 (67.58%), Query Frame = 1 
Query:  172 GGGRRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPKEDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 828
            GG R  TP+GQMS     PAI  +   M+ MF P  P+EF +   K  P    GI+          LFE   PP  E+F + ++R A   AA  +   E ++ ++  W+PK+D+KA  D YKTL VA++SYDTTEKKLR+EFEQYGPI S+R+V D DGKPRGYAF+E+E E DM++AYKR DG+KIDGRR+ VDVERGRTV+ W+PRR GGGLG +RK
Sbjct:   27 GGVRLVTPKGQMSGSNMPPAITGLPQNMRAMFEPRPPVEFLRLAPKPPPRPYTGISQYA------GLFETDEPPARERFLSYKERKAAERAAFMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVTDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRK 239
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BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A6G0M502_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M502_9STRA)

HSP 1 Score: 208 bits (529), Expect = 5.700e-59
Identity = 114/217 (52.53%), Postives = 144/217 (66.36%), Query Frame = 1 
Query:  181 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPK-EDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 828
            R+ TP+GQMS    GPAI  +   +K MF P  PL+    + KR  P   G+AA L        FE   PPP    ETP++R  R    K  A E  ++     W+P  ED +   DAYKTLFV +ISY+TTE++LR EFEQYGP+ S+R+V+D +GK RGY FVEYE E+DM+ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:    8 RKMTPKGQMSSSGMGPAIMHLPTHLKVMFEPNAPLDHLPRLVKRKMPPYTGLAAFL------DAFESETPPPRAVQETPKERRERRRQEKMAAVEAKMQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 218
[Close]
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Match: A0A6A3TRP9_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3TRP9_9STRA)

HSP 1 Score: 208 bits (529), Expect = 6.640e-59
Identity = 114/217 (52.53%), Postives = 144/217 (66.36%), Query Frame = 1 
Query:  181 RRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCKRTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEADEEGLKAKIGTWNPK-EDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYGPINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 828
            R+ TP+GQMS    GPAI  +   +K MF P  PL+    + KR  P   G+AA L        FE   PPP    ETP++R  R    K  A E  ++     W+P  ED +   DAYKTLFV +ISY+TTE++LR EFEQYGP+ S+R+V+D +GK RGY FVEYE E+DM+ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:    8 RKMTPKGQMSSSGMGPAIMHLPTHLKVMFEPNAPLDHLPRLVKRKMPPYTGLAAFL------DAFESETPPPRAVQETPKERRERRRQEKMAAVEAKMQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 218
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P6_ECTSI2.400e-13185.59RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
H6WBA2_VAULI7.030e-7458.67RRM domain-containing protein n=1 Tax=Vaucheria li... [more]
A0A7S2Y0A0_9STRA1.950e-6354.34Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8K1CMI4_PYTOL7.170e-6252.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XVV7_9STRA1.600e-6052.73RRM domain-containing protein n=1 Tax=Pythium bras... [more]
K3X2C0_GLOUD3.610e-6052.53RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A2D4BHZ3_PYTIN5.410e-5951.61RRM domain-containing protein n=1 Tax=Pythium insi... [more]
A0A4D9D1Y9_9STRA5.450e-5952.97RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A6G0M502_9STRA5.700e-5952.53RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6A3TRP9_9STRA6.640e-5952.53RRM domain-containing protein n=1 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:510449..515738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score404.8
Seed ortholog evalue3.7e-110
Seed eggNOG ortholog2880.D7G2P6
KEGG koko:K11093
KEGG Pathwayko03040,map03040
KEGG ModuleM00351
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0018130,GO:0019438,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071920,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.snRNA binding
EggNOG OGsCOG0724@1,KOG0113@2759
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-11_002990.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons7
Model size1959
Cds size981
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927424.0842574-UTR-C-linearis_contig109:510448..5106071622927424.0842574-UTR-C-linearis_contig109:510448..510607Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 510449..510607 +
1690879692.8776724-UTR-C-linearis_contig109:510448..5106071690879692.8776724-UTR-C-linearis_contig109:510448..510607Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 510449..510607 +
1622927424.2494652-UTR-C-linearis_contig109:514919..5157381622927424.2494652-UTR-C-linearis_contig109:514919..515738Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 514920..515738 +
1690879692.950871-UTR-C-linearis_contig109:514919..5157381690879692.950871-UTR-C-linearis_contig109:514919..515738Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 514920..515738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927424.0956008-CDS-C-linearis_contig109:510607..5106981622927424.0956008-CDS-C-linearis_contig109:510607..510698Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 510608..510698 +
1690879692.8893118-CDS-C-linearis_contig109:510607..5106981690879692.8893118-CDS-C-linearis_contig109:510607..510698Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 510608..510698 +
1622927424.1741557-CDS-C-linearis_contig109:511584..5117901622927424.1741557-CDS-C-linearis_contig109:511584..511790Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 511585..511790 +
1690879692.8975606-CDS-C-linearis_contig109:511584..5117901690879692.8975606-CDS-C-linearis_contig109:511584..511790Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 511585..511790 +
1622927424.1864517-CDS-C-linearis_contig109:512064..5122671622927424.1864517-CDS-C-linearis_contig109:512064..512267Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 512065..512267 +
1690879692.9057293-CDS-C-linearis_contig109:512064..5122671690879692.9057293-CDS-C-linearis_contig109:512064..512267Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 512065..512267 +
1622927424.2022262-CDS-C-linearis_contig109:512699..5128291622927424.2022262-CDS-C-linearis_contig109:512699..512829Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 512700..512829 +
1690879692.917286-CDS-C-linearis_contig109:512699..5128291690879692.917286-CDS-C-linearis_contig109:512699..512829Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 512700..512829 +
1622927424.215406-CDS-C-linearis_contig109:513436..5136991622927424.215406-CDS-C-linearis_contig109:513436..513699Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 513437..513699 +
1690879692.9265056-CDS-C-linearis_contig109:513436..5136991690879692.9265056-CDS-C-linearis_contig109:513436..513699Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 513437..513699 +
1622927424.2254066-CDS-C-linearis_contig109:514372..5144231622927424.2254066-CDS-C-linearis_contig109:514372..514423Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 514373..514423 +
1690879692.934373-CDS-C-linearis_contig109:514372..5144231690879692.934373-CDS-C-linearis_contig109:514372..514423Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 514373..514423 +
1622927424.236658-CDS-C-linearis_contig109:514882..5149191622927424.236658-CDS-C-linearis_contig109:514882..514919Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 514883..514919 +
1690879692.9425235-CDS-C-linearis_contig109:514882..5149191690879692.9425235-CDS-C-linearis_contig109:514882..514919Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 514883..514919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1140.1prot_C-linearis_contig109.1140.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 510608..514919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1140.1

>prot_C-linearis_contig109.1140.1 ID=prot_C-linearis_contig109.1140.1|Name=mRNA_C-linearis_contig109.1140.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=327bp
MAMMGGGRRNTPRGQMSMGKGGPAIQMMEGIMKDMFAPPLPLEFKKSVCK
RTPPEIQGIAAMLKGKDGESLFEKGPPPPPEKFETPRQRHARIAAAKKEA
DEEGLKAKIGTWNPKEDKKAKGDAYKTLFVAKISYDTTEKKLRKEFEQYG
PINSLRMVQDEDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDV
ERGRTVRNWLPRRFGGGLGDSRKERPKKGQEAEWRERERREAEAKEAERE
AKREKERQEERARRDREREERDRSRGVDDKDDGGGGGGKRADSRERGRRG
GSRDRSRSRDGSRDRRRRSRSRDRRR*
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mRNA from alignment at C-linearis_contig109:510449..515738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1140.1 ID=mRNA_C-linearis_contig109.1140.1|Name=mRNA_C-linearis_contig109.1140.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5290bp|location=Sequence derived from alignment at C-linearis_contig109:510449..515738+ (Chordaria linearis ClinC8C monoicous)
CAAGTGCTGAGCGCAGTGACGAACCGCCTTCCAGAGGATCTTGCGCTCGT
GTAACCCGTGGAGTGCTGCAGGCTGGAGTGCTTTGTCCTCTCCTCGCTCG
TCCACGAAAAGGGAGCAGCAGAGAGAATCAGTTAGTCCTTTGGCCGACAC
GGCCCGAAAATGGCCATGATGGGCGGCGGCCGTCGCAACACCCCTCGGGG
GCAGATGTCCATGGGGAAGGGAGGTCCCGCCATCCAGATGATGGAAGGAA
GTGAGTCATTTTTGTGTGTGCGTCGTGGGGTTATTTTGTATTTGCGCTTC
GTTTGGCGTTGTTGTCATTGTGTTTGCCTTTCGTTTTTGCCTTGTTCGCC
CGGGCCTCGTCTCTCTGTTCGCTCACAGTGGCGCAACAGGATCGCGTTCG
CAAATCGCGCGCGTTTTTTGGTACACAGAATTACTGCGCGGAAGAATGAC
GTGCATACGGCGGTGTCGAGCAGACATAGTAAACTCGCTTGGCGTTAGAG
TCAAACCCTGTTGTTTGTTAGAGGGAAGCACGAATTTCCCCGCTCAAATC
TAAAACCGAGAGCCTCTTCACAACGCGTTCACCTGATACCTATCAGGAGT
CTCTCTCTGTCTCTGCTCGTATCCCCTCGTATTCCGTGCTGGTGTGTTTG
GCTGCGGGTAGTTTTGTATCTACGTGCAATATACCTCGACGCCAGAATAG
AAGTCCCGGTAGACACGGCTGTTCATGTTTGCTGCGACAGCAGCAGTTGT
AGTGTGTTGGCGCAAAAAAACGCGATCTGGGATAGATGCCCGTTGCCATG
CCGGTCGGTTGGCGGAGAAGGTACCCATACCTCCGCTTGATGGCACCGTA
AAGGCACCAGTTCCGTGCGAAACCAAGTTGCATAAGCGCGGCCAACCTTG
ACCGTTTTTGTCTGTAATGCCTGCGTTTGTTTGGCCGCGTGCATTCCATG
ACACCAACCAAACCACCTTGCTTGCGGCCTTAGCTACGTCCGCAAACATT
GAACATTGGAACTCTGCCCTACATCGCCGTTGTCTCACGCACGCCCTTGC
CTCACACCTGTCCGCTCTGCTCTGCTCTGGGTTCATTGATATATGTCCCT
TTCTTTGACAAAAAACACGCCATCAAAACAAAACAGTCATGAAGGATATG
TTCGCTCCCCCGCTCCCGCTGGAGTTCAAGAAGAGCGTCTGCAAGAGAAC
CCCCCCCGAGATCCAAGGGATTGCGGCCATGCTCAAGGGCAAGGACGGGG
AGTCCCTCTTCGAGAAGGGCCCGCCCCCGCCGCCCGAGAAGTTCGAGACC
CCTAGGCAGCGTCACGCCAGGATCGCGGCTGCGAAGAAGGAGGTAGAGAC
GTGTTGTGGTTTGTTTTTTCGTATTTTCGTTGTGCGGCGTTTTGTGTGTG
CGCGTTTGCGTCTGATAACCCGTTTGCGCGAGAAATCCGTTGGGTTCACA
GGTCTACCTGTCTATGACCGCACCTGCATAGCACTACCTGGGATGCAGCA
TCTTTGGATCTAGAGTCCTGTTGTTGTGGAAAAAACACGCCCGCATTTGT
ATGAACGCGCGCCCCGCCCACCATCCCCTCTCACTCCCGCGCGCACGGCG
TGACGACAACGTCCAGGCCGATGAGGAAGGGCTGAAGGCGAAGATCGGCA
CCTGGAACCCCAAGGAGGACAAGAAGGCCAAGGGCGACGCATACAAGACC
TTGTTCGTCGCCAAGATCAGCTACGACACCACGGAGAAAAAGCTGCGCAA
GGAGTTCGAGCAGTACGGCCCCATCAACTCGCTGCGCATGGTGCAGGACG
AGGACGGCAAGCCCCGGGGGTGAGTGAGAGTGAGGGACGATGGAAGGGCG
GTATAAAGTGTAAGAAAGGCACAGAGAGGAGCAGATACAGAGACGCGGAG
ATGGAGATAGTGGGAAAGAAGGGGAGGGCCGTAAGGCGAGAGGGGCAGAG
GCAGAGGTGAGGACAGAGACGGAAACGTGTGTACCAGTAGAGATCAACTA
CCAGTACATGTTTTCCTCTCTTCATCGTGTCTTTCTGGTTCTCTCTCACC
GACATGCGTTCGTGGAGTGTTGGCATGTGTTTTCTCTTTCTCGTCCATGT
TCTGTTTTTCCTGTCACGTGCTTTGGTTGGTGGTTCTCGGACCTACCGAA
AAATTCGATATGCCGTGGATTTGTGTCGCGATCGTTTTTTACGGGTGTGC
TTTTTGGCCAAAACACACGACACGGTCGATCGATCGCATGCCATCACGCA
GGTACGCGTTCGTGGAGTACGAGAACGAGGATGACATGCGGATCGCCTAC
AAGAGGGGGGACGGCCGCAAGATCGACGGCCGTAGGGTCACCGTGGATGT
CGAGCGCGGCCGCACCGTGCGCAACTGGCTGGTGAGTCAGAGTCAGGCAG
AGCGCCCGGCCTCCCCCTCGCTGTTTCGGCAGTGGGATGTGTTGCTACTT
ATTCTATAGTGGTATTACTTTATTGGTGTTTTTTGGTAGTTGTGGTGGCG
ATTCTGTTACTCTTTTGTCGTTGGCGTGCACAGCGAAATCCGCTCCAACT
TTGTCTGTGGTTGCAGCAAAACTTGTTCATCATAGATTTCGCGCGTATGG
TGTTTTGTAATGCTGTTACCTCGAGAGTTCGCTTCGCGGTTGCGCGTTTG
TTTTTTTCTTTTTTGTCGTTTTTGTGCCCTGTGTTCCGGACTGATCTTCT
CCGCGAGCGAGGGGTCAGTGTTGATTTTGCCTGGAAAAGCATGAGAAGAT
GTGACGTGAGACGCCGTTTTCGGATGGAAATAAGGAGAGACGATGCAGCA
TCTACAATAAAAATATTGTGCTTGTTCCCCTCCATTCTCTTCCCACTCCC
TCTCCCCCCTCTCCCTGCCCTCTAACTGCCCCCTCTTCACCCCGAACCCG
TCCGATCCACGCCCCGAACGAATACCCAAAGACCGATCTCGCTACCCTAT
ACCCCCCCTTGCCTGTACCCGCACCCATACCATCACAGCCCCGGCGCTTC
GGCGGCGGTCTCGGAGACTCCCGCAAGGAGCGCCCGAAGAAGGGCCAGGA
GGCCGAGTGGCGCGAGCGCGAGCGCCGGGAGGCGGAGGCGAAGGAGGCCG
AAAGGGAGGCCAAGCGCGAGAAGGAGCGACAGGAGGAACGGGCCCGCCGG
GACCGGGAGAGGGAGGAGCGGGACAGGAGCCGAGGGGTGGACGACAAGGA
CGACGGCGGCGGCGGCGGCGGCAAGAGAGCCGACAGTCGGGAGCGCGGAA
GGTAAGTCTGCGTGTGAAGTGCCGTCGAATTTTAGGCTGCCGCCCCTTCC
CACCGGCAGCCCTCCAAGAACGCAACGGGCCAGTGCCTAAGGTTCTCGTT
AGTTCCTTTGCTGCCCTATTAAAAGCATGCATCGGGTAGCATTCGTCGTG
GAGTTCTTCGTGTTTCTGTCCTTCTGCTTTTATGCCCCGTGTGTGGCCTC
TCGGGCATGGCGCCGTGTTCGAACGGATGCTTTTGCCGGGATGCCTTGTG
CGCATCTGTTGCGGAGGAGGGTTGTACGTTTTAGCTAGCTTACTGCGTAC
TGGCAATTCGACCGTGCAGGCATGGTGTGTCTACAAGTTGTGGGGGGAAT
GTTGTTCCAAGCACCTCTCAAGCTGTTTGACTTTCTGTGAGCAAGGCCTC
AGTTTTGGGCGTTGGTTCTTGCTGTCATGAATAGGTCATGATTTGCGAGT
GGGTTCGCTGGTGAGAACTCGCCGATCTGCTCCTAGTGACTTATTTTTCC
CGAGTTTCGACATAACTCTTCGTCTAGTTTCACGAACTAATCTGCTTCCG
TCATTATCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTC
GCGGCCGTTGTTGCCTCTCCTGCAACTGCTGTTTTCTGTTGTGCCTGGCT
GTGTGGTATGGCTGTGTGGTATAGACGGGGCGGTAGCCGTGACCGAAGCC
GGAGCAGGGACGGAAGCAGGGACAGGTAAGATCGCGCAGTACCAGTACAC
TAGTGCTAGTTTGGATCACTGCTGTTGAGTCACGCGCAACCTTGGGTCTC
GCCTCTCACGTGGTTGCTGAACGATGTGCTGTACGTACGTATAGATGGGC
CATCGAATCGAAACCGAAGTGTATTGGCAGCAAGTTGCACCTGCTTTGAC
ACTGGTAGGATATCAACAATGTGGCATGCGTCATTGCTGGAGCATAACGT
GCTCCTGCGATGTATGTACCGTTTTGAGTGTTTCCCTCTTCGTTGGAGCT
GTCAGGTCGGCGCACCGTTTCCCGTTTTTCCCCTGAATGACGGCTAGTAT
TTTTCCGGTTGTGCGTGCCCGCGGCCAACTCCTTGACCCATGCCCCCTTC
CCCCCTCAACCTTCTCGTGACCCTGACCCCCTGATTTACAACATGTCCAT
CCGTCAACCACACCGACCAACTGTGTTTCCACAGGCGCAGGCGCAGCAGG
AGCCGCGACCGCCGCCGCTAAAAAGCACATTGAATGTTTCGGGCCAGGGC
CACGGTTTTAGATGCTATTGTCGCCTGGTAAGGCGCGATGAAACCAGGCT
TTAGCCGAAGCCTTCTGCCAAGCGAGTCTTCGCCCCCTGTTGGCGTAGCA
TTATGGTTGATGTACCGTTCCTTCGCACGCCAATAAGTCGATTGATCAGC
GCCGTGTTGCCGTTGTGTTCGCGTTTTGTGGATTGCTGGCGGACGAGCGA
GACGCATCCCGTGCTTTTAGAAGAAGCGCTTTTTTTTTTTTTTTAGCTGT
ACCGTCGTTCCCGTCGGCCGGCACAGCGGCACAACAGTGTCGAGTGTCCA
GGTTGGAGGGTTACATAGCCAAGCGATCGATCCGAGGGACGCACGCCCAA
CTCGGGAATTCTGTTGGTCTGGTGTGTTTGTCGTTTGTGCACATGCACAG
GCACATCTGCCGCAGCGGTATCGCGGGTTTTATTGCCTGGTGGCCGTGTT
CAAGAAGCAGATACGCAGAGGCTCGAGGGCAGATCGAAGGAGGGGAAAAC
AGGCGGTAGGATTGCCGGCGGGGAAAGAGCTGGCCGTGCAGGGCGTGGTA
CTTTGTTGGAAGCAAAAGGGTAAAGAGTGGAGGCGAACGGGCGTTGCACC
TTCCAGGCGGTTTCTAGACGCTTGTTGTCGGCGTGCCGCTCGCGCCGTTT
CCGGGGACAACCACATACTGTACTTGATTCAACCAGATTTTTCCATCGAT
GTTTCGACCAGCCCCCGACAAAAATGGCAACTTTTGGGGGAATTTCGGGG
GAGAGTTGTTCCTTTTGATGAATCGAGGCAGGATTCTCCG
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Coding sequence (CDS) from alignment at C-linearis_contig109:510449..515738+

>mRNA_C-linearis_contig109.1140.1 ID=mRNA_C-linearis_contig109.1140.1|Name=mRNA_C-linearis_contig109.1140.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at C-linearis_contig109:510449..515738+ (Chordaria linearis ClinC8C monoicous)
ATGGCCATGATGGGCGGCGGCCGTCGCAACACCCCTCGGGGGCAGATGTC
CATGGGGAAGGGAGGTCCCGCCATCCAGATGATGGAAGGAAATGGCCATG
ATGGGCGGCGGCCGTCGCAACACCCCTCGGGGGCAGATGTCCATGGGGAA
GGGAGGTCCCGCCATCCAGATGATGGAAGGAATCATGAAGGATATGTTCG
CTCCCCCGCTCCCGCTGGAGTTCAAGAAGAGCGTCTGCAAGAGAACCCCC
CCCGAGATCCAAGGGATTGCGGCCATGCTCAAGGGCAAGGACGGGGAGTC
CCTCTTCGAGAAGGGCCCGCCCCCGCCGCCCGAGAAGTTCGAGACCCCTA
GGCAGCGTCACGCCAGGATCGCGGCTGCGAAGAAGGAGTCATGAAGGATA
TGTTCGCTCCCCCGCTCCCGCTGGAGTTCAAGAAGAGCGTCTGCAAGAGA
ACCCCCCCCGAGATCCAAGGGATTGCGGCCATGCTCAAGGGCAAGGACGG
GGAGTCCCTCTTCGAGAAGGGCCCGCCCCCGCCGCCCGAGAAGTTCGAGA
CCCCTAGGCAGCGTCACGCCAGGATCGCGGCTGCGAAGAAGGAGGCCGAT
GAGGAAGGGCTGAAGGCGAAGATCGGCACCTGGAACCCCAAGGAGGACAA
GAAGGCCAAGGGCGACGCATACAAGACCTTGTTCGTCGCCAAGATCAGCT
ACGACACCACGGAGAAAAAGCTGCGCAAGGAGTTCGAGCAGTACGGCCCC
ATCAACTCGCTGCGCATGGTGCAGGACGAGGACGGCAAGCCCCGGGGGCC
GATGAGGAAGGGCTGAAGGCGAAGATCGGCACCTGGAACCCCAAGGAGGA
CAAGAAGGCCAAGGGCGACGCATACAAGACCTTGTTCGTCGCCAAGATCA
GCTACGACACCACGGAGAAAAAGCTGCGCAAGGAGTTCGAGCAGTACGGC
CCCATCAACTCGCTGCGCATGGTGCAGGACGAGGACGGCAAGCCCCGGGG
GTACGCGTTCGTGGAGTACGAGAACGAGGATGACATGCGGATCGCCTACA
AGAGGGGGGACGGCCGCAAGATCGACGGCCGTAGGGTCACCGTGGATGTC
GAGCGCGGCCGCACCGTGCGCAACTGGCTGGTACGCGTTCGTGGAGTACG
AGAACGAGGATGACATGCGGATCGCCTACAAGAGGGGGGACGGCCGCAAG
ATCGACGGCCGTAGGGTCACCGTGGATGTCGAGCGCGGCCGCACCGTGCG
CAACTGGCTGCCCCGGCGCTTCGGCGGCGGTCTCGGAGACTCCCGCAAGG
AGCGCCCGAAGAAGGGCCAGGAGGCCGAGTGGCGCGAGCGCGAGCGCCGG
GAGGCGGAGGCGAAGGAGGCCGAAAGGGAGGCCAAGCGCGAGAAGGAGCG
ACAGGAGGAACGGGCCCGCCGGGACCGGGAGAGGGAGGAGCGGGACAGGA
GCCGAGGGGTGGACGACAAGGACGACGGCGGCGGCGGCGGCGGCAAGAGA
GCCGACAGTCGGGAGCGCGGAAGCCCCGGCGCTTCGGCGGCGGTCTCGGA
GACTCCCGCAAGGAGCGCCCGAAGAAGGGCCAGGAGGCCGAGTGGCGCGA
GCGCGAGCGCCGGGAGGCGGAGGCGAAGGAGGCCGAAAGGGAGGCCAAGC
GCGAGAAGGAGCGACAGGAGGAACGGGCCCGCCGGGACCGGGAGAGGGAG
GAGCGGGACAGGAGCCGAGGGGTGGACGACAAGGACGACGGCGGCGGCGG
CGGCGGCAAGAGAGCCGACAGTCGGGAGCGCGGAAGACGGGGCGGTAGCC
GTGACCGAAGCCGGAGCAGGGACGGAAGCAGGGACAGACGGGGCGGTAGC
CGTGACCGAAGCCGGAGCAGGGACGGAAGCAGGGACAGGCGCAGGCGCAG
CAGGAGCCGCGACCGCCGCCGCTAAGCGCAGGCGCAGCAGGAGCCGCGAC
CGCCGCCGCTAA
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