prot_C-linearis_contig109.1118.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig109.1118.1
Unique Nameprot_C-linearis_contig109.1118.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length179
Homology
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Match: D8LKV0_ECTSI (High mobility group protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKV0_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 6.990e-96
Identity = 150/178 (84.27%), Postives = 162/178 (91.01%), Query Frame = 0
Query:    1 MEARESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRYEQELAMYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYRQAMAVWKDGGADALADHMAARGDADAAAAKYEEEEAEGVDRT 178
            MEARE VKN LPEGSKVTEVMKGIAA+WREL E +K EWTAKAA DKDRYEQEL++YDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMS+EEK PY+TKA+DDT+RYR+AM VWKDGGADALA HMAARG+ D A  KYEE+  +G DRT
Sbjct:   66 MEAREEVKNALPEGSKVTEVMKGIAAKWRELSETDKEEWTAKAAQDKDRYEQELSVYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSDEEKLPYQTKAHDDTLRYREAMTVWKDGGADALASHMAARGETDGAVGKYEED-GDGGDRT 242          
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Match: F0W3U4_9STRA (High mobility group protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0W3U4_9STRA)

HSP 1 Score: 147 bits (370), Expect = 5.290e-41
Identity = 73/142 (51.41%), Postives = 102/142 (71.83%), Query Frame = 0
Query:    1 MEARESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRYEQELAMYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYRQAMAVW 142
            M+ RE +K+ +P  +KVT+VM+ IA  W ++ E EK  W + A +DK RYE+E+A YDGPL+VPNKRAKKDP APKRA SAFL +SQ MRP+L++  P+ KN D+SK LG+ W++ ++ +K PY  K  +D  RY++ M  W
Sbjct:   49 MDKREEIKSHMPADAKVTDVMRAIADAWSKMSEDEKQPWKSAAEVDKQRYEEEMASYDGPLRVPNKRAKKDPSAPKRASSAFLFYSQVMRPQLKKENPDLKNTDISKRLGEAWSKATDVQKAPYVEKEREDRSRYKREMEEW 190          
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Match: A0A7S2UYP1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYP1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.340e-39
Identity = 72/141 (51.06%), Postives = 101/141 (71.63%), Query Frame = 0
Query:    2 EARESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRYEQELAMYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYRQAMAVW 142
            E R  VK  L E  KVT+VMK +AA WR+L E  + E+ AKA +D+ R+++E+++Y+GPLK+PN+RAKK+P APKRAMSAFLHFS   RP+L+E  P+  ++ +SK+LG  WN + +E K+PY  K+  D  RYR  +A W
Sbjct:   44 EKRAEVKARLGENCKVTDVMKAVAALWRQLDEEGRKEFVAKAEMDRARFQEEMSIYEGPLKIPNRRAKKNPNAPKRAMSAFLHFSIEYRPKLKEQNPQLTHLQISKLLGDTWNALPQETKDPYVEKSRIDNQRYRAEIATW 184          
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Match: A0A835ZA26_9STRA (High mobility group box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA26_9STRA)

HSP 1 Score: 148 bits (373), Expect = 5.230e-39
Identity = 81/154 (52.60%), Postives = 104/154 (67.53%), Query Frame = 0
Query:    4 RESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRYEQELAMYDGPLKVPNKRA---------------------KKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYR 136
            R+ VK GLPEGSKVTE+M+ +AA WRE+ E +++EW AKAA DK RY+ EL  Y GPLK+PNKRA                     KKDP APKR MSAFL++SQ MRPRL+E YP+AK  D+SK+LG++W RM  ++K+ Y TKA  +   Y+
Sbjct:  130 RQEVKAGLPEGSKVTEIMRRVAALWREMTEDQRSEWHAKAAEDKQRYQDELTTYQGPLKIPNKRAHKAMFEQPQPAYEANGRAKRAKKDPRAPKRPMSAFLYYSQVMRPRLKEQYPDAKAQDVSKILGEQWARMGPDDKKVYNTKAEHEIAIYK 283          
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Match: M4BDC0_HYAAE (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BDC0_HYAAE)

HSP 1 Score: 142 bits (357), Expect = 9.790e-39
Identity = 72/142 (50.70%), Postives = 98/142 (69.01%), Query Frame = 0
Query:    1 MEARESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRYEQELAMYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYRQAMAVW 142
            ME RE +K  +PE SKVT+VM+ IA  W ++G+ +K  W   A  DK RYE+E+A YDGPL+VPNKRAKK P APKRA SAFL +SQ MRPR++  + + KN ++SK LG+ W + ++E+K P+  K   D  RY++ M  W
Sbjct:   78 MEKREEIKATMPENSKVTDVMRAIADAWGKMGDDDKQPWKVAAEADKQRYEEEMAAYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWGKATDEQKAPFVEKEKVDRARYKREMEEW 219          
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Match: A0A067C9M6_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C9M6_SAPPC)

HSP 1 Score: 139 bits (351), Expect = 3.320e-38
Identity = 71/142 (50.00%), Postives = 97/142 (68.31%), Query Frame = 0
Query:    1 MEARESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRYEQELAMYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYRQAMAVW 142
            M+ RE +K  +P  SKVT+VM+ IA  W ++ E EKA W   A  DK RYE+E+A YDGPL+VPNKRAKK P APKRA SAFL +SQ MRPR++  + + KN ++SK LG+ W + ++ +K P+  K  +D  RY++ M  W
Sbjct:   45 MDKREEIKATMPPNSKVTDVMRAIADAWSKMSEEEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHADMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEW 186          
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Match: K3WVY6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVY6_GLOUD)

HSP 1 Score: 139 bits (350), Expect = 4.700e-38
Identity = 70/142 (49.30%), Postives = 99/142 (69.72%), Query Frame = 0
Query:    1 MEARESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRYEQELAMYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYRQAMAVW 142
            M+ RE +K  +PE +KVT+VM+ IA  W ++ + +K  W A A  DK RYE+E+A YDGPL+VPNKRAKK P APKRA SAFL +SQ MRPR++  + + KN ++SK LG+ W++ ++E+K P+  K   D  RY++ M  W
Sbjct:   46 MDKREDIKATMPENAKVTDVMRAIADAWAKMSDDDKQPWKAAAEADKQRYEEEMASYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWSKATDEQKAPFVEKEKLDRARYKREMEEW 187          
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Match: A0A3R7KJP5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KJP5_9STRA)

HSP 1 Score: 139 bits (350), Expect = 8.020e-38
Identity = 71/142 (50.00%), Postives = 97/142 (68.31%), Query Frame = 0
Query:    1 MEARESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRYEQELAMYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYRQAMAVW 142
            ME RE +K  +PE SKVT+VM+ IA  W ++ + +K  W   A  DK RYE+E+A YDGPL+VPNKRAKK P APKRA SAFL +SQ MRPR++  + + KN ++SK LG+ W + ++E+K P+  K   D  RY++ M  W
Sbjct:   49 MEKREEIKATMPENSKVTDVMRAIADAWGKMSDEDKQPWKVAAEADKQRYEEEMASYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWAKATDEQKAPFVEKEKVDRARYKREMEEW 190          
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Match: A0A1V9ZRB9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZRB9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.400e-37
Identity = 72/142 (50.70%), Postives = 98/142 (69.01%), Query Frame = 0
Query:    1 MEARESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRYEQELAMYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYRQAMAVW 142
            M+ RE +K  +P  SKVT+VM+ IA  W ++ E EKA W   A  DK RYE+E+A YDGPL+VPNKRAKK P APKRA SAFL +SQ MRPR++  +P+ KN ++SK LG+ W + ++ +K P+  K  +D  RY++ M  W
Sbjct:   44 MDKREEIKATMPPNSKVTDVMRAIAEAWSKMSEDEKAPWKLSAESDKQRYEEEMATYDGPLRVPNKRAKKHPNAPKRASSAFLFYSQVMRPRIKAEHPDMKNTEISKQLGEAWAKATKAQKAPFVEKEKEDRARYKREMEEW 185          
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Match: A0A5D6YAG9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAG9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.640e-37
Identity = 70/142 (49.30%), Postives = 98/142 (69.01%), Query Frame = 0
Query:    1 MEARESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRYEQELAMYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEAKNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYRQAMAVW 142
            M+ RE +K  +P+ SKVT+VM+ IA  W ++ + +K  W A A  DK RYE+E+A YDGPL+VPNKRAKK P APKRA SAFL +SQ MRPR++  + + KN ++SK LG+ W + ++E+K P+  K   D  RY++ M  W
Sbjct:   71 MDKREEIKATMPDNSKVTDVMRAIADAWAKMTDEDKQPWKAAAESDKQRYEEEMASYDGPLRVPNKRAKKHPDAPKRASSAFLFYSQVMRPRIKAEHQDMKNTEISKQLGEAWGKATDEQKAPFVEKEKLDRARYKREMEEW 212          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1118.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKV0_ECTSI6.990e-9684.27High mobility group protein n=2 Tax=Ectocarpus Tax... [more]
F0W3U4_9STRA5.290e-4151.41High mobility group protein putative n=2 Tax=Albug... [more]
A0A7S2UYP1_9STRA1.340e-3951.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZA26_9STRA5.230e-3952.60High mobility group box domain-containing protein ... [more]
M4BDC0_HYAAE9.790e-3950.70Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
A0A067C9M6_SAPPC3.320e-3850.00Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
K3WVY6_GLOUD4.700e-3849.30Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3R7KJP5_9STRA8.020e-3850.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A1V9ZRB9_9STRA2.400e-3750.70Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A5D6YAG9_9STRA2.640e-3749.30Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00886HIGHMOBLTY12coord: 90..108
score: 26.71
coord: 19..41
score: 25.93
coord: 127..147
score: 25.04
coord: 108..127
score: 38.89
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 2..58
coord: 65..154
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 1..59
e-value: 0.23
score: 19.8
coord: 74..144
e-value: 9.5E-20
score: 81.6
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 2..57
e-value: 3.8E-9
score: 36.8
coord: 75..143
e-value: 2.6E-20
score: 72.6
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 1..58
score: 12.325
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 75..143
score: 18.311
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 1..63
e-value: 7.9E-12
score: 47.2
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 64..146
e-value: 3.1E-24
score: 87.1
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 2..59
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 66..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:323321..328891 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1118.1mRNA_C-linearis_contig109.1118.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig109 323277..329071 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig109.1118.1 ID=prot_C-linearis_contig109.1118.1|Name=mRNA_C-linearis_contig109.1118.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=179bp
MEARESVKNGLPEGSKVTEVMKGIAARWRELGEAEKAEWTAKAALDKDRY
EQELAMYDGPLKVPNKRAKKDPLAPKRAMSAFLHFSQSMRPRLRETYPEA
KNMDMSKMLGQEWNRMSEEEKEPYKTKANDDTMRYRQAMAVWKDGGADAL
ADHMAARGDADAAAAKYEEEEAEGVDRT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf