prot_C-linearis_contig109.1096.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig109.1096.1
Unique Nameprot_C-linearis_contig109.1096.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length335
Homology
[Close]
BLAST of mRNA_C-linearis_contig109.1096.1 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.650e-19
Identity = 88/256 (34.38%), Postives = 110/256 (42.97%), Query Frame = 0 
Query:   67 QVAAAIAASQLETPALRDVCHGVDDEDAELARAIHMSTSQEEQQEQERGNANTSPASEWVCPACTLVNDGSSGSSACSVCFAPRPDLPPVCTP------------ALDAGGIGIGIXRASXXXXAMDEG-GEEGXGEKGAAVCVGD-GQRAVGDAFPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGEESGGSSPVSPGPQPRVPRKGPLSARYELRGILHHLGQHAFAGHYVTDVRQDES 308
            Q+  A+AAS+ E  A        +DE A+LA+AI +S        QE G      + EW C ACT +N+ S     C +C  P P+  P  +P            A D+GG G    ++         G G  G G+  A V + D  QR   DA P P                                         K +ES           PRVPRKGPL ARYELRGILHHLG+HAFAGHYVTDVR++ S
Sbjct:   19 QLEEALAASKRE--AFGPEGEAQEDEAADLAKAICLS--------QEGGGG---CSDEWACAACTFINEAS--VVVCGMCGTPLPEPLPPSSPGTPPAETDMSSVAGDSGG-GSADGKSGERCGVQRRGSGARGGGDDEAVVALSDVRQRTAQDASPQPQPPAPLARGDDVKK---------------------------KQQESPPXXXXEQPQAPRVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREERS 231
[Close]
BLAST of mRNA_C-linearis_contig109.1096.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.460e-11
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0 
Query:  270 RVPRKGPLSARYELRGILHHLGQHAFAGHYVTDVRQD 306
            RVPRKGPL ARYELRGILHHLG+HAFAGHYVTDVR++
Sbjct: 1375 RVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREE 1411
[Close]
BLAST of mRNA_C-linearis_contig109.1096.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.240e-5
Identity = 25/36 (69.44%), Postives = 26/36 (72.22%), Query Frame = 0 
Query:  269 PRVPRKGPLSARYELRGILHHLGQHAFAGHYVTDVR 304
            PR PR  PL ARY L  +LHHLG HAFAGHYV  VR
Sbjct: 1272 PRPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVR 1307
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1096.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KST6_9PHAE6.650e-1934.38RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7G2P5_ECTSI2.460e-1189.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKZ9_9STRA3.240e-569.44USP domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 227..247
NoneNo IPR availableGENE3D3.90.70.10coord: 220..314
e-value: 4.0E-5
score: 25.0
NoneNo IPR availableGENE3D4.10.1060.10coord: 116..153
e-value: 1.1E-5
score: 26.5
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00973USP_2coord: 281..299

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:148181..149498 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1096.1mRNA_C-linearis_contig109.1096.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig109 148179..149498 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig109.1096.1 ID=prot_C-linearis_contig109.1096.1|Name=mRNA_C-linearis_contig109.1096.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=335bp
PLGGERGGLGRRMAMSSGESGSGRLVGGRPGFPSNILQGLDTLSGGSLLM
QRKKKRRQEIADREREQVAAAIAASQLETPALRDVCHGVDDEDAELARAI
HMSTSQEEQQEQERGNANTSPASEWVCPACTLVNDGSSGSSACSVCFAPR
PDLPPVCTPALDAGGIGIGIGRASGEGEAMDEGGEEGGGEKGAAVCVGDG
QRAVGDAFPSPSSGGGGGGTQDQQLKQQQQQQQQVELEQKSEGEEDQDEE
DGKGEESGGSSPVSPGPQPRVPRKGPLSARYELRGILHHLGQHAFAGHYV
TDVRQDESSDRAAVAGEHGASDKKTPVGGKGSGAK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018200USP_CS