mRNA_C-linearis_contig109.1096.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1096.1
Unique NamemRNA_C-linearis_contig109.1096.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig109.1096.1 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.650e-19
Identity = 88/256 (34.38%), Postives = 110/256 (42.97%), Query Frame = 1 
Query:  199 QVAAAIAASQLETPALRDVCHGVDDEDAELARAIHMSTSQEEQQEQERGNANTSPASEWVCPACTLVNDGSSGSSACSVCFAPRPDLPPVCTP------------ALDAGGIGIGIXRASXXXXAMDEG-GEEGXGEKGAAVCVGD-GQRAVGDAFPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGEESGGSSPVSPGPQPRVPRKGPLSARYELRGILHHLGQHAFAGHYVTDVRQDES 924
            Q+  A+AAS+ E  A        +DE A+LA+AI +S        QE G      + EW C ACT +N+ S     C +C  P P+  P  +P            A D+GG G    ++         G G  G G+  A V + D  QR   DA P P                                         K +ES           PRVPRKGPL ARYELRGILHHLG+HAFAGHYVTDVR++ S
Sbjct:   19 QLEEALAASKRE--AFGPEGEAQEDEAADLAKAICLS--------QEGGGG---CSDEWACAACTFINEAS--VVVCGMCGTPLPEPLPPSSPGTPPAETDMSSVAGDSGG-GSADGKSGERCGVQRRGSGARGGGDDEAVVALSDVRQRTAQDASPQPQPPAPLARGDDVKK---------------------------KQQESPPXXXXEQPQAPRVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREERS 231
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BLAST of mRNA_C-linearis_contig109.1096.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.460e-11
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:  808 RVPRKGPLSARYELRGILHHLGQHAFAGHYVTDVRQD 918
            RVPRKGPL ARYELRGILHHLG+HAFAGHYVTDVR++
Sbjct: 1375 RVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREE 1411
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BLAST of mRNA_C-linearis_contig109.1096.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.240e-5
Identity = 25/36 (69.44%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:  805 PRVPRKGPLSARYELRGILHHLGQHAFAGHYVTDVR 912
            PR PR  PL ARY L  +LHHLG HAFAGHYV  VR
Sbjct: 1272 PRPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVR 1307
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KST6_9PHAE6.650e-1934.38RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7G2P5_ECTSI2.460e-1189.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKZ9_9STRA3.240e-569.44USP domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:148179..149498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D7G2P5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1007
Cds size1005
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.0381734-CDS-C-linearis_contig109:148180..1489841622927416.0381734-CDS-C-linearis_contig109:148180..148984Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 148181..148984 -
1690879688.9447303-CDS-C-linearis_contig109:148180..1489841690879688.9447303-CDS-C-linearis_contig109:148180..148984Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 148181..148984 -
1622927416.0479913-CDS-C-linearis_contig109:149297..1494981622927416.0479913-CDS-C-linearis_contig109:149297..149498Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 149298..149498 -
1690879688.9562433-CDS-C-linearis_contig109:149297..1494981690879688.9562433-CDS-C-linearis_contig109:149297..149498Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 149298..149498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1096.1prot_C-linearis_contig109.1096.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 148181..149498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1096.1

>prot_C-linearis_contig109.1096.1 ID=prot_C-linearis_contig109.1096.1|Name=mRNA_C-linearis_contig109.1096.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=335bp
PLGGERGGLGRRMAMSSGESGSGRLVGGRPGFPSNILQGLDTLSGGSLLM
QRKKKRRQEIADREREQVAAAIAASQLETPALRDVCHGVDDEDAELARAI
HMSTSQEEQQEQERGNANTSPASEWVCPACTLVNDGSSGSSACSVCFAPR
PDLPPVCTPALDAGGIGIGIGRASGEGEAMDEGGEEGGGEKGAAVCVGDG
QRAVGDAFPSPSSGGGGGGTQDQQLKQQQQQQQQVELEQKSEGEEDQDEE
DGKGEESGGSSPVSPGPQPRVPRKGPLSARYELRGILHHLGQHAFAGHYV
TDVRQDESSDRAAVAGEHGASDKKTPVGGKGSGAK
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mRNA from alignment at C-linearis_contig109:148179..149498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1096.1 ID=mRNA_C-linearis_contig109.1096.1|Name=mRNA_C-linearis_contig109.1096.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1320bp|location=Sequence derived from alignment at C-linearis_contig109:148179..149498- (Chordaria linearis ClinC8C monoicous)
CCGCTCGGCGGGGAGAGAGGAGGGCTGGGAAGGAGGATGGCGATGTCGTC
GGGGGAGTCAGGGTCGGGGAGGCTTGTAGGCGGCCGGCCGGGGTTTCCGT
CGAACATCCTCCAGGGGCTGGACACTCTCAGCGGCGGGTCGCTGCTGATG
CAGAGGAAGAAGAAGCGGCGGCAGGAGATCGCCGATCGCGAGCGGGAGCA
GGTGTGTCCGTTGTTCTCCTGTTCATGCAAGGTGTGCTGGGTTGTTCTCG
GCGTGCAGTATTGCCTGGGTGGGTGGGTGGGTGGGTGCGGTGGCGTCCTT
GCGACCTGGGCATGCGTGTTGGAAGCACTTGTTTCGGTTTGCTTAGTGCA
GCGGCAGGAAGGAAGGAAGGAAGGAAGTTAGGTAGGTAGGCAGGCAGGCC
GGCATGACGGGACGCTTCCTTCTGGTTGTTCGACACAACATAGCGCCCGA
TTCGTCATGTCTTCCCGCTCGGTGACTTCCGGCCCGCCCTCTCTACTCCT
CACTCACACCGCAGGTCGCGGCCGCAATAGCCGCATCGCAGCTGGAAACG
CCCGCCCTCAGAGACGTTTGTCACGGGGTAGACGACGAAGACGCGGAGCT
CGCTCGCGCGATCCACATGAGCACGAGCCAGGAGGAACAGCAGGAGCAAG
AGCGCGGCAACGCCAACACCAGCCCCGCCAGCGAGTGGGTCTGCCCGGCC
TGCACGCTGGTGAACGACGGGAGCTCGGGTTCTTCGGCGTGCTCTGTCTG
CTTCGCGCCGAGGCCGGACCTACCGCCGGTTTGCACCCCCGCCCTTGATG
CCGGGGGCATTGGCATTGGCATTGGCAGGGCGAGTGGAGAGGGTGAAGCC
ATGGATGAAGGAGGAGAAGAAGGCGGAGGTGAGAAGGGTGCGGCGGTATG
CGTGGGCGACGGGCAGCGGGCAGTAGGCGACGCTTTCCCTTCCCCAAGCA
GTGGCGGCGGTGGCGGCGGCACACAGGACCAACAGCTGAAGCAGCAGCAG
CAGCAGCAGCAGCAGGTGGAGCTAGAGCAGAAGTCAGAGGGAGAGGAGGA
CCAGGACGAGGAGGACGGCAAAGGGGAAGAAAGCGGGGGCAGCAGCCCGG
TCTCCCCGGGGCCGCAGCCGAGGGTCCCCAGGAAGGGCCCCCTGAGCGCG
AGGTACGAGCTCCGCGGCATCCTCCACCACCTCGGCCAGCACGCCTTCGC
GGGGCACTACGTGACCGACGTACGACAGGACGAGTCGTCCGATCGTGCTG
CTGTGGCTGGTGAGCACGGGGCTTCAGACAAAAAGACACCGGTGGGGGGG
AAGGGAAGCGGGGCGAAGGG
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Coding sequence (CDS) from alignment at C-linearis_contig109:148179..149498-

>mRNA_C-linearis_contig109.1096.1 ID=mRNA_C-linearis_contig109.1096.1|Name=mRNA_C-linearis_contig109.1096.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at C-linearis_contig109:148179..149498- (Chordaria linearis ClinC8C monoicous)
CCGCTCGGCGGGGAGAGAGGAGGGCTGGGAAGGAGGATGGCGATGTCGTC
GGGGGAGTCAGGGTCGGGGAGGCTTGTAGGCGGCCGGCCGGGGTTTCCGT
CGAACATCCTCCAGGGGCTGGACACTCTCAGCGGCGGGTCGCTGCTGATG
CAGAGGAAGAAGAAGCGGCGGCAGGAGATCGCCGATCGCGAGCGGGAGCA
GCCGCTCGGCGGGGAGAGAGGAGGGCTGGGAAGGAGGATGGCGATGTCGT
CGGGGGAGTCAGGGTCGGGGAGGCTTGTAGGCGGCCGGCCGGGGTTTCCG
TCGAACATCCTCCAGGGGCTGGACACTCTCAGCGGCGGGTCGCTGCTGAT
GCAGAGGAAGAAGAAGCGGCGGCAGGAGATCGCCGATCGCGAGCGGGAGC
AGGTCGCGGCCGCAATAGCCGCATCGCAGCTGGAAACGCCCGCCCTCAGA
GACGTTTGTCACGGGGTAGACGACGAAGACGCGGAGCTCGCTCGCGCGAT
CCACATGAGCACGAGCCAGGAGGAACAGCAGGAGCAAGAGCGCGGCAACG
CCAACACCAGCCCCGCCAGCGAGTGGGTCTGCCCGGCCTGCACGCTGGTG
AACGACGGGAGCTCGGGTTCTTCGGCGTGCTCTGTCTGCTTCGCGCCGAG
GCCGGACCTACCGCCGGTTTGCACCCCCGCCCTTGATGCCGGGGGCATTG
GCATTGGCATTGGCAGGGCGAGTGGAGAGGGTGAAGCCATGGATGAAGGA
GGAGAAGAAGGCGGAGGTGAGAAGGGTGCGGCGGTATGCGTGGGCGACGG
GCAGCGGGCAGTAGGCGACGCTTTCCCTTCCCCAAGCAGTGGCGGCGGTG
GCGGCGGCACACAGGACCAACAGCTGAAGCAGCAGCAGCAGCAGCAGCAG
CAGGTGGAGCTAGAGCAGAAGTCAGAGGGAGAGGAGGACCAGGACGAGGA
GGACGGCAAAGGGGAAGAAAGCGGGGGCAGCAGCCCGGTCTCCCCGGGGC
CGCAGCCGAGGGTCCCCAGGAAGGGCCCCCTGAGCGCGAGGTACGAGCTC
CGCGGCATCCTCCACCACCTCGGCCAGCACGCCTTCGCGGGGCACTACGT
GACCGACGTACGACAGGACGAGTCGTCCGATCGTGCTGCTGTGGCTGGTG
AGCACGGGGCTTCAGACAAAAAGACACCGGTGGGGGGGAAGGGAAGCGGG
GCGAAGGTCGCGGCCGCAATAGCCGCATCGCAGCTGGAAACGCCCGCCCT
CAGAGACGTTTGTCACGGGGTAGACGACGAAGACGCGGAGCTCGCTCGCG
CGATCCACATGAGCACGAGCCAGGAGGAACAGCAGGAGCAAGAGCGCGGC
AACGCCAACACCAGCCCCGCCAGCGAGTGGGTCTGCCCGGCCTGCACGCT
GGTGAACGACGGGAGCTCGGGTTCTTCGGCGTGCTCTGTCTGCTTCGCGC
CGAGGCCGGACCTACCGCCGGTTTGCACCCCCGCCCTTGATGCCGGGGGC
ATTGGCATTGGCATTGGCAGGGCGAGTGGAGAGGGTGAAGCCATGGATGA
AGGAGGAGAAGAAGGCGGAGGTGAGAAGGGTGCGGCGGTATGCGTGGGCG
ACGGGCAGCGGGCAGTAGGCGACGCTTTCCCTTCCCCAAGCAGTGGCGGC
GGTGGCGGCGGCACACAGGACCAACAGCTGAAGCAGCAGCAGCAGCAGCA
GCAGCAGGTGGAGCTAGAGCAGAAGTCAGAGGGAGAGGAGGACCAGGACG
AGGAGGACGGCAAAGGGGAAGAAAGCGGGGGCAGCAGCCCGGTCTCCCCG
GGGCCGCAGCCGAGGGTCCCCAGGAAGGGCCCCCTGAGCGCGAGGTACGA
GCTCCGCGGCATCCTCCACCACCTCGGCCAGCACGCCTTCGCGGGGCACT
ACGTGACCGACGTACGACAGGACGAGTCGTCCGATCGTGCTGCTGTGGCT
GGTGAGCACGGGGCTTCAGACAAAAAGACACCGGTGGGGGGGAAGGGAAG
CGGGGCGAAG
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