prot_C-linearis_contig107.1026.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig107.1026.1
Unique Nameprot_C-linearis_contig107.1026.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length321
Homology
[Close]
BLAST of mRNA_C-linearis_contig107.1026.1 vs. uniprot
Match: B5LWM7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM7_9PHYC)

HSP 1 Score: 303 bits (777), Expect = 3.150e-98
Identity = 148/294 (50.34%), Postives = 194/294 (65.99%), Query Frame = 0 
Query:   23 KIKSWLGQTYGPGVELYMEDCLRVQGGRLAVYKEAEIWGARLITDSIKSAISSQDGGLLIKLGFQDDVATGHFIGKVRSWCEFYDLTLREPVFFEGVAQGNKVTAAQYVATETTSPPGAQARARSRSSEASFTTYVTEILDNKDAQCIYQSFEVADPWNQKDSCHLISHSVCKKTPLDEDESNRVAASTRVHRGLDGTSDRFPPWIRIAVKDVDMTPVPCKGKNDKVHYRFRVNLLIDFLYDEQKTGHGIAWKEGVKDDGVNPVETCVHVKNYETFVNGVEWKYKETTEIWEKI 316
            ++K W  ++  PG+E  ++DC  VQG RLA+Y+EAE  GAR +T    + ISS D GLL+KL F++    G F+  VR WC F  + L + V+ E    G  V    YV  ET SPP ++AR RSR S  S T++VTEILD K   C+YQS E A  ++QKD CHL++H  CK TP+D D SNR+A ST++HR LDGTS R PPW R+ VK VD+ PV C+G   K H R+RV+L IDF+ +E +  HG  WK+G +DDG +PVET V+VK+Y+ F N VEWKYK TT IW  +
Sbjct:   91 RVKKWAARSSAPGIEFVIQDCSSVQGCRLALYEEAEKHGARRVTPE-SNPISSHDNGLLVKLAFENQGMRGFFLNSVRRWCSFNKVDLGDIVYNEHTNLGRFVFMGDYVEEETDSPPDSRARKRSRESAESLTSFVTEILDPKSELCVYQSVE-AQGYSQKDGCHLLAHCECKGTPMDSDPSNRLACSTQLHRALDGTSKRHPPWARVKVKGVDINPVLCEGVGVKQHNRYRVDLYIDFMSEEHRRNHGFYWKDGSRDDGESPVETFVYVKDYDVFTNCVEWKYKHTTAIWAAL 382
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1026.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWM7_9PHYC3.150e-9850.34Uncharacterized protein n=1 Tax=Feldmannia species... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..320
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.632

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:162793..163755 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1026.1mRNA_C-linearis_contig107.1026.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig107 159694..164331 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig107.1026.1 ID=prot_C-linearis_contig107.1026.1|Name=mRNA_C-linearis_contig107.1026.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=321bp
MLAIVQFIAVITPILLTVHAAKKIKSWLGQTYGPGVELYMEDCLRVQGGR
LAVYKEAEIWGARLITDSIKSAISSQDGGLLIKLGFQDDVATGHFIGKVR
SWCEFYDLTLREPVFFEGVAQGNKVTAAQYVATETTSPPGAQARARSRSS
EASFTTYVTEILDNKDAQCIYQSFEVADPWNQKDSCHLISHSVCKKTPLD
EDESNRVAASTRVHRGLDGTSDRFPPWIRIAVKDVDMTPVPCKGKNDKVH
YRFRVNLLIDFLYDEQKTGHGIAWKEGVKDDGVNPVETCVHVKNYETFVN
GVEWKYKETTEIWEKIRAKA*
back to top