mRNA_C-linearis_contig107.1026.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1026.1
Unique NamemRNA_C-linearis_contig107.1026.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig107.1026.1 vs. uniprot
Match: B5LWM7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM7_9PHYC)

HSP 1 Score: 303 bits (776), Expect = 8.130e-94
Identity = 148/294 (50.34%), Postives = 194/294 (65.99%), Query Frame = 1 
Query:  436 KIKSWLGQTYGPGVELYMEDCLRVQGGRLAVYKEAEIWGARLITDSIKSAISSQDGGLLIKLGFQDDVATGHFIGKVRSWCEFYDLTLREPVFFEGVAQGNKVTAAQYVATETTSPPGAQARARSRSSEASFTTYVTEILDNKDAQCIYQSFEVADPWNQKDSCHLISHSVCKKTPLDEDESNRVAASTRVHRGLDGTSDRFPPWIRIAVKDVDMTPVPCKGKNDKVHYRFRVNLLIDFLYDEQKTGHGIAWKEGVKDDGVNPVETCVHVKNYETFVNGVEWKYKETTEIWEKI 1317
            ++K W  ++  PG+E  ++DC  VQG RLA+Y+EAE  GAR +T    + ISS D GLL+KL F++    G F+  VR WC F  + L + V+ E    G  V    YV  ET SPP ++AR RSR S  S T++VTEILD K   C+YQS E A  ++QKD CHL++H  CK TP+D D SNR+A ST++HR LDGTS R PPW R+ VK VD+ PV C+G   K H R+RV+L IDF+ +E +  HG  WK+G +DDG +PVET V+VK+Y+ F N VEWKYK TT IW  +
Sbjct:   91 RVKKWAARSSAPGIEFVIQDCSSVQGCRLALYEEAEKHGARRVTPE-SNPISSHDNGLLVKLAFENQGMRGFFLNSVRRWCSFNKVDLGDIVYNEHTNLGRFVFMGDYVEEETDSPPDSRARKRSRESAESLTSFVTEILDPKSELCVYQSVE-AQGYSQKDGCHLLAHCECKGTPMDSDPSNRLACSTQLHRALDGTSKRHPPWARVKVKGVDINPVLCEGVGVKQHNRYRVDLYIDFMSEEHRRNHGFYWKDGSRDDGESPVETFVYVKDYDVFTNCVEWKYKHTTAIWAAL 382
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWM7_9PHYC8.130e-9450.34Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:159694..164331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog4787.PITG_18826T0
Hectar predicted targeting categorysignal peptide
EggNOG OGs2EHZ0@1,2SNHF@2759,3Q7RC@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons4
Model size1908
Cds size963
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1026.1prot_C-linearis_contig107.1026.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 162793..163755 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927406.3919795-UTR-C-linearis_contig107:159693..1598511622927406.3919795-UTR-C-linearis_contig107:159693..159851Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 159694..159851 +
1690879682.521673-UTR-C-linearis_contig107:159693..1598511690879682.521673-UTR-C-linearis_contig107:159693..159851Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 159694..159851 +
1622927406.4033382-UTR-C-linearis_contig107:161596..1617351622927406.4033382-UTR-C-linearis_contig107:161596..161735Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 161597..161735 +
1690879682.5327642-UTR-C-linearis_contig107:161596..1617351690879682.5327642-UTR-C-linearis_contig107:161596..161735Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 161597..161735 +
1622927406.415602-UTR-C-linearis_contig107:162570..1626411622927406.415602-UTR-C-linearis_contig107:162570..162641Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 162571..162641 +
1690879682.541849-UTR-C-linearis_contig107:162570..1626411690879682.541849-UTR-C-linearis_contig107:162570..162641Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 162571..162641 +
1622927406.427236-UTR-C-linearis_contig107:162791..1627921622927406.427236-UTR-C-linearis_contig107:162791..162792Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 162792..162792 +
1690879682.551235-UTR-C-linearis_contig107:162791..1627921690879682.551235-UTR-C-linearis_contig107:162791..162792Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 162792..162792 +
1622927406.4545376-UTR-C-linearis_contig107:163755..1643311622927406.4545376-UTR-C-linearis_contig107:163755..164331Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 163756..164331 +
1690879682.5706677-UTR-C-linearis_contig107:163755..1643311690879682.5706677-UTR-C-linearis_contig107:163755..164331Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 163756..164331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927406.4387681-CDS-C-linearis_contig107:162792..1637551622927406.4387681-CDS-C-linearis_contig107:162792..163755Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 162793..163755 +
1690879682.560632-CDS-C-linearis_contig107:162792..1637551690879682.560632-CDS-C-linearis_contig107:162792..163755Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 162793..163755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1026.1

>prot_C-linearis_contig107.1026.1 ID=prot_C-linearis_contig107.1026.1|Name=mRNA_C-linearis_contig107.1026.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=321bp
MLAIVQFIAVITPILLTVHAAKKIKSWLGQTYGPGVELYMEDCLRVQGGR
LAVYKEAEIWGARLITDSIKSAISSQDGGLLIKLGFQDDVATGHFIGKVR
SWCEFYDLTLREPVFFEGVAQGNKVTAAQYVATETTSPPGAQARARSRSS
EASFTTYVTEILDNKDAQCIYQSFEVADPWNQKDSCHLISHSVCKKTPLD
EDESNRVAASTRVHRGLDGTSDRFPPWIRIAVKDVDMTPVPCKGKNDKVH
YRFRVNLLIDFLYDEQKTGHGIAWKEGVKDDGVNPVETCVHVKNYETFVN
GVEWKYKETTEIWEKIRAKA*
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mRNA from alignment at C-linearis_contig107:159694..164331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1026.1 ID=mRNA_C-linearis_contig107.1026.1|Name=mRNA_C-linearis_contig107.1026.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4638bp|location=Sequence derived from alignment at C-linearis_contig107:159694..164331+ (Chordaria linearis ClinC8C monoicous)
CTGATGATGATGGCTCTCACTTCTGCTGGTCTCCCGGTCACTGCTGCTGC
GGGGCGGGGAGGGGTGAGCGTGGGTGTGCGTGTGTGCTTGCGCGCGACAG
CAGGGAGCAAAAAGGAGGCGTTTTTTATTCTGACAGTCTTTTTTTGAGTC
TGCGCTCCGCGTCGCTGCTGCCGCCACCATCACACCTCCGCGACAGCAGT
TGGCATCCGCCGCACACCACAGCAGCATCAGCAGGGGGTCACCAATATCT
TTTATAGTTTTGGGCGACACTTAGGTGACGATTTATGCATAGACAAATGT
ACACGTTTGGTACTGTTACTGCTGGCAGCTGATTCTGGCATTGTTTTGCG
CATTTAAGAGTCATTTTTCACATTTTGAATCTACTTTTTTTTTCAAAAAA
TGCGCACGGGTCAGGGGGTCACTCCGATATCTTTTTTATTTTCGGGCGAT
ATCTTCGTGACGATTTATGCATAGACACATGTACGTTTGGTACTGTTACT
GCTGTAAGCTGATTTTGGCACTGTTTTGCTCATTAAAGAGTCATTTTTCA
CATTTTGAATCTACTTTTTTTTTCAAAAAATGCGCACGGGTCAGGGGGTC
ACTCCGATATCTTTAATATTTTTGGGCGACACTTAGGTGACGATTTATGC
ATAGACACATGTACACGTTTGGTACTGTTACTGCTGTAAGCTGATTTTGG
CACTGTTTTGCTCATTTAAGAGTCATTTTTCACATTTTGAATCTACTTTT
TTTTTCAAAAAATGCGCACGGGTCAGGGGGTCACTCCGATATCTTTTTTA
TTTTCGGGCGATATCTTCGTGACGATTTATGCATAGACACATGTACACGT
TTGGTACTGTTACTGCTGGCAGCTGATTCTGGCATTGTTTTGCGCATTTA
GGAGTCATTTTTCACATTTTGAATCTACTTTTTTTTCAAAAGTTGCGCAC
GGGTGAGGGAGTCACTCCGATATCTTTAATATTTTTGGGCGACACTTGAG
TGACGAGATATGCATAGAGACATGTTTTATTTTCGGGCGATATCTTCGTG
ACGATTTATGCATAGACACATGTACACGTTTGGTACTGTTACTGCTGGCA
GCTGATTCTGGCATTGTTTTGCGCATTTAGGAGTCATTTTTCACATTTTG
AATCTACTTTTTTTTCAAAAGCTGCGCACGGGTGAGGGAGTCACTCCGAT
ATCTTTAATATTTTTGGGCGACACTTGAGTGACGAGATATGCATAGAGAC
ATGTACACGTTTGGCTACAGCAGTACATTTACGTTGGTTTCAAAGCACAC
GACCTTGGTTTATTTTACAACGGCGCAGACTTAGGAAGCCAGACCTTCTG
GGAACGTCGGGGGTACCCGGGGGGTGAAAAGTATGAAGTTTGCGTGCTCT
AAAGGTACACCAGTGGCGCACAACGTGCCAAATTGCCGAGGGGGCTTTTG
GGCATACCCAGTTTTGACATACCGCGGACCCCCCCTAAAAGAACAAACGG
TTGTGTCTCGTGAGCGCTCGCCAGATACGCTAAAGAAGTAAACAGCTGTG
GTCTAGAAGGCGTCAGCACACCACAAAGACAAACTCCTGCACTTGTGGCG
GTGTGGCGCGATGTATTCGCGGAGATATCACGACGCAACCAATATTACAT
GTGCGTGTCACCGCAGGCCACCAACACAGGAGACCACAGGAGACACCCGC
ACTCGTTTACGCACGGGGACAAACGATCACACACCTCTTTTTCTCACAGA
CGCTGCTGATGATGATGGCTCTCACTCCTGCTGGTCTCCCGGTCACTGCT
GCTGCGGGGCGGGGAGGGGTGAGCGTGGGTGTGCGTGTGTGCCTGCGCGC
GACAGCAGGGAGCAAAAAGGAGGCGTTTTTTAATCTGACAGTCTTTTTTT
GAGTCTGCGCTCCGCGTCGCTGCTGCCGCCACCATCACACCTCCGCGACA
GCAGTTGGCATCCGCCACACACCACAGCAACAGCACCAGCACATGCAACA
GCAGGAGCAGAGGGAGCAGCAACAGCAGCAGTGAAAACACAGGTGCGTCA
AATGAAAGTAGCTGTCTCCTGCACCAGCGCGCTGCTGCGACGCACATGCA
ACAATGGTTGCGTCGTCATATCAGCGCAAAGACATCACCTCACTTACCCC
CAACTACACGAAATCGTCCCTGTGGTGTGCAGATACCTTTCCGTCCAGAG
TTGTTCATTTGTTTAGTGTTTCTAGCGAGTTTCGTGTACGCCGTCTCACG
CACGCGCTCTGGGGGGTGCCGTGGGATCTAAAATAGGTATGCCCAAAAGC
CCCCTGCATGTTTGGCACGTTGTGGGCCACTGTGTACTCCCAGATTGTTG
ATAACACGTGCTTTCCGTCTGTAGAGTGTCCCCGGCTGCCCACAATATGT
TTTTTGTATTGGTTGGAGCGCATACAGCCCTCGCCGTCACGAAACATGGT
AAATGTACCAAAAAGTGTACACGTTTATGGACATATCTCGTCACCAAAAC
ATCCCCCGACCAAAATTTTTGCATGGGAGTGTGCGCGTGACCCTCCCCGA
AAATGTCACCAAGTTGCAGATTTTTTGACGAAGATTTGAATCTTGGGGAC
GCAAAATAGTGTGTACAGCAGTTACAAATGTCCAAAATCGGAGACGTTTG
GGGGCACCGTGCCTCACCAAAGTGTCAGATGATCCCCAAATTTTGCACGC
GCGTGTGCCTTGCCTGTGGGCAACTTGTGAAAAAAAAATTAATAGAATCG
GAGCTATTCTCGACTCAAAGAGGCAGTTTCAAGTTTTGCACAAGTAGTGC
CTTCCGTACGCCCCATCAAAGTTTCAGCTGACCCCACGCTTTGCACGAAC
CACCCATCTCTCCACCTGAAACAGCAGGACCAAGCAAAGGCGGTGGCAGC
GGTGGCAACAACAAAGCGAGCAAGTGACTGGTGGCGTGGAGAAAACCGGT
GGGTTGTGTTGTGTGTGTGTGTGTGTGTGCGTGCATGTGTCCGTGTGTTT
CCCAAGAAGTCTTGTACGGACGGACGCGACGTTGAACGACTGTGTGTTTG
ATCAATGTTCTCCATCCTTGCCGCTTTTTTGTACATGTTTCCCAACAGGA
TGCTCGCCATCGTCCAGTTCATTGCGGTGATCACACCCATCCTTCTGACA
GTGCACGCGGCTAAAAAAATCAAGTCGTGGTTGGGACAGACATATGGCCC
CGGTGTGGAGTTGTACATGGAAGATTGCTTGCGTGTCCAGGGAGGCAGGC
TCGCCGTCTACAAAGAGGCAGAAATATGGGGTGCCAGGTTGATCACCGAT
AGCATCAAAAGTGCAATCTCGAGCCAGGATGGCGGCCTCTTGATCAAACT
CGGCTTCCAGGATGACGTCGCCACTGGACATTTCATTGGGAAAGTAAGGA
GTTGGTGCGAGTTCTATGACTTGACTTTGCGTGAACCCGTCTTTTTTGAG
GGAGTTGCTCAGGGGAACAAGGTCACCGCGGCCCAGTACGTAGCAACCGA
GACCACATCGCCCCCTGGTGCACAAGCCCGCGCCAGGAGCAGGAGCAGCG
AAGCATCGTTCACGACTTACGTGACGGAAATACTCGACAACAAGGATGCG
CAGTGTATCTATCAGTCATTCGAGGTAGCGGATCCTTGGAATCAGAAGGA
CAGTTGTCACTTGATCTCGCATTCCGTGTGCAAGAAGACGCCACTTGATG
AGGACGAGAGTAACAGAGTGGCCGCCTCCACACGAGTTCATCGAGGACTA
GACGGTACGTCGGACAGATTTCCTCCTTGGATAAGGATAGCCGTCAAGGA
TGTTGACATGACTCCTGTACCATGCAAGGGTAAGAACGACAAGGTTCACT
ACAGATTTCGTGTGAATCTGTTGATTGATTTTCTCTACGACGAGCAGAAG
ACAGGCCACGGTATCGCTTGGAAAGAGGGGGTCAAGGATGACGGTGTTAA
TCCGGTCGAGACATGTGTTCATGTGAAGAACTACGAGACGTTTGTCAATG
GCGTAGAGTGGAAGTACAAGGAAACGACCGAAATCTGGGAAAAGATCAGG
GCGAAGGCTTGATGAAGTTGGCAATTCGGCGGTTTGTGCGGGGGGGGGGT
TGGGCACCATTAACTTTACCTTGTCGCCAGGCGGGAGAGAAAGGGGGGAT
AGGTTTACTGTTCATGTGATTTATAGGGATAGGCAGAAAGGGAGTGGGGC
ACGTTACTGTAGCACTATGCACCCTTCCAGCGGATGTATTTCACACACAA
GGGTGAGCACGTTTGCTGTTTACCGTGGATTTTCAAACATTTTTCATGTC
AACAATGTGCGATAAGCGAGTGTATGAATGTGCGAACGCACAGTTGCCTC
CTCAAGGGTCCAACTTTTAGGGTTTTGTTAAACCTCGGATTATCCCACTG
TTTTTCGCAAAATGCTTGTAAAACATTTCTTCGTGGTGTCTTGGCCCCAA
GGACATCGTGTAGTGGTGTTCTTTGCATGCCGACGTGTGAGTGCATGCAA
TGTACAACAGACTCCGCTCCTGACCGCGAGGGACAAATTAATGTGCCTAT
GAGTGCAGTCAATTCGGAGGTCTTCGTGGTGGGGTGGGAGTAGCTCTCGC
ACCCGTACCACTATCGACGACCGCGAGCTTAGTTTGTT
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Coding sequence (CDS) from alignment at C-linearis_contig107:159694..164331+

>mRNA_C-linearis_contig107.1026.1 ID=mRNA_C-linearis_contig107.1026.1|Name=mRNA_C-linearis_contig107.1026.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1926bp|location=Sequence derived from alignment at C-linearis_contig107:159694..164331+ (Chordaria linearis ClinC8C monoicous)
ATGCTCGCCATCGTCCAGTTCATTGCGGTGATCACACCCATCCTTCTGAC
AGTGCACGCGGCTAAAAAAATCAAGTCGTGGTTGGGACAGACATATGGCC
CCGGTGTGGAGTTGTACATGGAAGATTGCTTGCGTGTCCAGGGAGGCAGG
CTCGCCGTCTACAAAGAGGCAGAAATATGGGGTGCCAGGTTGATCACCGA
TAGCATCAAAAGTGCAATCTCGAGCCAGGATGGCGGCCTCTTGATCAAAC
TCGGCTTCCAGGATGACGTCGCCACTGGACATTTCATTGGGAAAGTAAGG
AGTTGGTGCGAGTTCTATGACTTGACTTTGCGTGAACCCGTCTTTTTTGA
GGGAGTTGCTCAGGGGAACAAGGTCACCGCGGCCCAGTACGTAGCAACCG
AGACCACATCGCCCCCTGGTGCACAAGCCCGCGCCAGGAGCAGGAGCAGC
GAAGCATCGTTCACGACTTACGTGACGGAAATACTCGACAACAAGGATGC
GCAGTGTATCTATCAGTCATTCGAGGTAGCGGATCCTTGGAATCAGAAGG
ACAGTTGTCACTTGATCTCGCATTCCGTGTGCAAGAAGACGCCACTTGAT
GAGGACGAGAGTAACAGAGTGGCCGCCTCCACACGAGTTCATCGAGGACT
AGACGGTACGTCGGACAGATTTCCTCCTTGGATAAGGATAGCCGTCAAGG
ATGTTGACATGACTCCTGTACCATGCAAGGGTAAGAACGACAAGGTTCAC
TACAGATTTCGTGTGAATCTGTTGATTGATTTTCTCTACGACGAGCAGAA
GACAGGCCACGGTATCGCTTGGAAAGAGGGGGTCAAGGATGACGGTGTTA
ATCCGGTCGAGACATGTGTTCATGTGAAGAACTACGAGACGTTTGTCAAT
GGCGTAGAGTGGAAGTACAAGGAAACGACCGAAATCTGGGAAAAGATCAG
GGCGAAGGCTTGAATGCTCGCCATCGTCCAGTTCATTGCGGTGATCACAC
CCATCCTTCTGACAGTGCACGCGGCTAAAAAAATCAAGTCGTGGTTGGGA
CAGACATATGGCCCCGGTGTGGAGTTGTACATGGAAGATTGCTTGCGTGT
CCAGGGAGGCAGGCTCGCCGTCTACAAAGAGGCAGAAATATGGGGTGCCA
GGTTGATCACCGATAGCATCAAAAGTGCAATCTCGAGCCAGGATGGCGGC
CTCTTGATCAAACTCGGCTTCCAGGATGACGTCGCCACTGGACATTTCAT
TGGGAAAGTAAGGAGTTGGTGCGAGTTCTATGACTTGACTTTGCGTGAAC
CCGTCTTTTTTGAGGGAGTTGCTCAGGGGAACAAGGTCACCGCGGCCCAG
TACGTAGCAACCGAGACCACATCGCCCCCTGGTGCACAAGCCCGCGCCAG
GAGCAGGAGCAGCGAAGCATCGTTCACGACTTACGTGACGGAAATACTCG
ACAACAAGGATGCGCAGTGTATCTATCAGTCATTCGAGGTAGCGGATCCT
TGGAATCAGAAGGACAGTTGTCACTTGATCTCGCATTCCGTGTGCAAGAA
GACGCCACTTGATGAGGACGAGAGTAACAGAGTGGCCGCCTCCACACGAG
TTCATCGAGGACTAGACGGTACGTCGGACAGATTTCCTCCTTGGATAAGG
ATAGCCGTCAAGGATGTTGACATGACTCCTGTACCATGCAAGGGTAAGAA
CGACAAGGTTCACTACAGATTTCGTGTGAATCTGTTGATTGATTTTCTCT
ACGACGAGCAGAAGACAGGCCACGGTATCGCTTGGAAAGAGGGGGTCAAG
GATGACGGTGTTAATCCGGTCGAGACATGTGTTCATGTGAAGAACTACGA
GACGTTTGTCAATGGCGTAGAGTGGAAGTACAAGGAAACGACCGAAATCT
GGGAAAAGATCAGGGCGAAGGCTTGA
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