prot_C-linearis_contig107.1011.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig107.1011.1
Unique Nameprot_C-linearis_contig107.1011.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length325
Homology
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: D7FHF8_ECTSI (Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF8_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 1.230e-81
Identity = 177/354 (50.00%), Postives = 223/354 (62.99%), Query Frame = 0
Query:   16 LALSLLRVVGFGTTSSRP--------RACVCA-------------------SNRVRARPRGTPMVSMASELSKTAISRMRVAELKQELATRGLESDGIRPVLQARLGQAAEVQRARNVMDRVHQRPSAYARTASAEADSIAGT--PPRLARGASLSKRTGRGPL-----SQRARSMSTSLPDPLRSSSKHKYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYK------------------VSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEISSTFTHPSF 317
            +A+ L+R  G G  +SRP        RAC  A                   ++RV +R  GT  V M + +S+TAI++MRVAEL++ELA+RGL++ GIRPVLQ RL +A E + A+ V+DR  QR     R+ + E    AGT  PP  AR    + +  R P       Q+ R +STS   P R  S   +L+QFDGGSRGNPGPSG GAVLYRL  SG R EVWS SVW+G+ RTNNEAEY GLIEGL AA++LGIKRL+VEGDSKL+IQQMLGNYK                  V+SPKM PLF++A +I+K+F+ LE+ HI RA N RAD LAN+AMDTE SS+ TH S+
Sbjct:    1 MAVCLMRAAGLG--ASRPLAFAARHQRACSAAGRSKAWCSRGGXXXXXXXSASRVSSRALGTG-VRMGAAISRTAIAKMRVAELREELASRGLDNTGIRPVLQGRLIEAKETEWAQAVIDRSRQRE----RSNTTEPPRAAGTTAPPGPARSQVATSQAARTPSPRIRQQQQQRGISTSSTKPGRQRST-THLLQFDGGSRGNPGPSGCGAVLYRLDESGEREEVWSSSVWIGEKRTNNEAEYRGLIEGLIAAEKLGIKRLSVEGDSKLVIQQMLGNYKGKQGKTERGGVGGGRGGGVTSPKMQPLFREATTISKAFDALELGHIMRAHNERADDLANIAMDTETSSSCTHRSY 346          
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A7S2KCF7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.110e-35
Identity = 69/133 (51.88%), Postives = 89/133 (66.92%), Query Frame = 0
Query:  173 YLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMD 305
            Y++QFDGGSRGNPG +GAG VLY   G     EVW G  ++G+  TNNEAEY+GL+ GL  A+ +G+  + V+GDS+LI++Q+ G YK  S K+ P F   KS+ K F   E+ HI R  N RAD LAN AMD
Sbjct:   11 YVLQFDGGSRGNPGTAGAGMVLYDEVGH----EVWHGRHYLGEHSTNNEAEYTGLLAGLKCARAIGVSNIVVQGDSELIVKQLQGKYKCKSSKLIPYFTSVKSLIKGFNSFEVRHIPREQNFRADELANEAMD 139          
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6C0DSN1_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DSN1_9ZZZZ)

HSP 1 Score: 132 bits (332), Expect = 2.630e-34
Identity = 70/140 (50.00%), Postives = 96/140 (68.57%), Query Frame = 0
Query:  172 KYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEISST 311
            +Y ++FDG S+GNPGP+GAGAV+Y+        E+W+ SV+VG   TNN AEY+GLI GL  A ELGIK L V GDS+LII+QM G YKV S  +   + KAK++++   ++  EHI R  N RAD LAN  + +++SS+
Sbjct:   26 EYCLKFDGCSKGNPGPAGAGAVIYKND-----EEIWANSVYVGDKETNNVAEYNGLIMGLTKANELGIKELLVMGDSELIIKQMKGEYKVKSVNIIEYYLKAKTLSRFLSEVHYEHIYRKDNTRADELANFGLQSKLSSS 160          
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6T8JIG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JIG0_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.850e-34
Identity = 69/134 (51.49%), Postives = 90/134 (67.16%), Query Frame = 0
Query:  173 YLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDT 306
            Y +QFDGGSRGNPG SGAG V+Y    +    EVW+GS  + +  TNNEAEY+ L++GL  A+ LGI+ LAV+GDS LI+ Q+ G YKV S  + P  + A  +  +F   E+ HI R  NGRAD LAN+AMD+
Sbjct:   37 YNLQFDGGSRGNPGLSGAGMVIY----NDKSQEVWNGSYLLPKEATNNEAEYTALVKGLQHARRLGIRHLAVQGDSNLIVMQITGRYKVKSQHLKPFHRDAVELRSAFSTFEISHIPREENGRADELANIAMDS 166          
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A4D9D4W7_9STRA (RNase H type-1 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4W7_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.680e-33
Identity = 69/143 (48.25%), Postives = 102/143 (71.33%), Query Frame = 0
Query:  172 KYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGR--TNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEISSTF 312
            +YL++FDGGSRGNPGP GAG V+Y      + V+V   S+W+G     TNNEAEY GL+ GL AAK+LGI+R+ VEGDS+L+++Q+LG YKV + ++  L+ +A ++ ++F +  + H+ER+ N  AD LAN A+D + + TF
Sbjct:  336 QYLLRFDGGSRGNPGPGGAGIVIYE---QASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKKLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTF 475          
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6C0DKZ1_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DKZ1_9ZZZZ)

HSP 1 Score: 128 bits (321), Expect = 1.080e-32
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = 0
Query:  172 KYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEIS 309
            +Y ++FDG S+GNPGP+GAGAV+Y+        E+W+ S +VG   TNN AEY GLI GL  A ELGIK L V GDS+LII+QM G YKV S  +   + KAK++++ F+ ++ EHI R  N RAD LAN+ +   ++
Sbjct:   27 EYCLKFDGCSKGNPGPAGAGAVIYKND-----QEIWANSKYVGDKETNNVAEYHGLIMGLSRANELGIKELLVMGDSELIIKQMKGEYKVKSVNIIEHYLKAKTLSRLFDNIKYEHIYRKDNTRADELANLGLQCNMN 159          
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A7S2ULA3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULA3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.480e-31
Identity = 71/152 (46.71%), Postives = 97/152 (63.82%), Query Frame = 0
Query:  161 LPDPLRSSSKHKYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEISSTF 312
            L DP R+     Y+M+FDGGSRGNPG +G G VLY    +   +EVW+G  ++ +  TNNEAEY GL+ GL  A+ +G++ + V+GDS+LI+ Q+ G YKV S  + PLF+    + + F   E+ HI R  NGRAD LAN AMD + S  F
Sbjct:   71 LIDPNRT-----YVMRFDGGSRGNPGIAGCGMVLYD---ADTGMEVWTGRQYL-ETATNNEAEYKGLLLGLQCARSMGVENIVVQGDSQLIVYQIEGKYKVKSKNLIPLFRAVMDLKRQFSFFEIGHIYRDKNGRADELANEAMDHKTSMGF 213          
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6C0M5M4_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0M5M4_9ZZZZ)

HSP 1 Score: 124 bits (310), Expect = 3.320e-31
Identity = 68/138 (49.28%), Postives = 91/138 (65.94%), Query Frame = 0
Query:  173 YLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEISS 310
            + M FDG S+GNPG +GAGA ++   G+    EV++ SV+ G   TNNEAEY+GLI GL AA + GI  L V GDS+L+I QM G YKV+SPK+APL++ A ++A  F  +  EH+ R  N RAD L+N  +    SS
Sbjct:    2 HTMYFDGCSKGNPGRAGAGAAIFNEEGT----EVFAESVFAGYSTTNNEAEYTGLILGLNAALKQGIAELQVRGDSQLVIYQMQGKYKVNSPKLAPLYQCATTLAAKFASIGFEHVYRDKNKRADALSNAGIPPSFSS 135          
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6C0JZJ6_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JZJ6_9ZZZZ)

HSP 1 Score: 125 bits (313), Expect = 4.550e-31
Identity = 65/149 (43.62%), Postives = 96/149 (64.43%), Query Frame = 0
Query:  161 LPDPLRSSSKHKYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEIS 309
            +P P    +   Y M FDG S+GNPGP+GAGAV+Y        VE+WS +++VG   TNN AEY+G++ GL  A    I+ L V+GDS+++I+QMLG YKV S  +  ++++AK + K F+K++  H+ R LN RAD L+N  +   I+
Sbjct:   50 IPCPESDIANPYYCMMFDGCSKGNPGPAGAGAVIYAN-----NVEIWSRAIFVGNRETNNLAEYTGMLLGLNEAVRRNIRVLTVKGDSEVVIKQMLGKYKVKSENLLDIYEQAKDLEKHFDKIDYIHVYRHLNARADALSNEGLAKVIT 193          
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6C0HEB0_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HEB0_9ZZZZ)

HSP 1 Score: 124 bits (311), Expect = 4.590e-31
Identity = 72/154 (46.75%), Postives = 96/154 (62.34%), Query Frame = 0
Query:  164 PLRSSSKHKYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDT-----EISSTF 312
            P    +  +Y+++FDG S+GNPGP+GAGAVLY  Y      E+W    +VG+  TNN AEY GL+ GL  A    I+ L V GDS+L+I+QM G YK+ S  + PL+ +AKS+ K F+K+  EHI R  N RAD LAN A++      EI S F
Sbjct:   21 PAYGENSFEYVLKFDGCSKGNPGPAGAGAVLY--YND---REIWYNRKFVGRKETNNYAEYCGLLLGLNEALRENIRELKVCGDSQLVIKQMKGEYKLKSENLYPLYTEAKSMEKQFDKIVYEHIYRQYNSRADELANAALEDQDFVDEIKSGF 169          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHF8_ECTSI1.230e-8150.00Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A7S2KCF7_9STRA1.110e-3551.88Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6C0DSN1_9ZZZZ2.630e-3450.00RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A6T8JIG0_9STRA9.850e-3451.49Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A4D9D4W7_9STRA5.680e-3348.25RNase H type-1 domain-containing protein n=3 Tax=M... [more]
A0A6C0DKZ1_9ZZZZ1.080e-3249.28RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A7S2ULA3_9STRA1.480e-3146.71Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6C0M5M4_9ZZZZ3.320e-3149.28RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A6C0JZJ6_9ZZZZ4.550e-3143.62RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A6C0HEB0_9ZZZZ4.590e-3146.75RNase H type-1 domain-containing protein n=1 Tax=v... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003034SAP domainSMARTSM00513sap_9coord: 64..98
e-value: 4.2E-6
score: 36.3
IPR003034SAP domainPFAMPF02037SAPcoord: 64..94
e-value: 9.1E-8
score: 31.7
IPR003034SAP domainPROSITEPS50800SAPcoord: 64..98
score: 9.886
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 177..302
e-value: 3.3E-23
score: 81.8
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 169..305
score: 10.498
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 171..312
e-value: 3.7E-34
score: 119.7
IPR036361SAP domain superfamilyGENE3D1.10.720.30coord: 42..107
e-value: 2.3E-8
score: 35.4
IPR036361SAP domain superfamilySUPERFAMILY68906SAP domaincoord: 63..99
NoneNo IPR availablePANTHERPTHR46387FAMILY NOT NAMEDcoord: 151..310
NoneNo IPR availablePANTHERPTHR46387:SF2POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 151..310
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..324
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..25
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.799
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 172..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:16346..20828 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1011.1mRNA_C-linearis_contig107.1011.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig107 15833..22017 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig107.1011.1 ID=prot_C-linearis_contig107.1011.1|Name=mRNA_C-linearis_contig107.1011.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp
MPAHLTRSLFIVPMALALSLLRVVGFGTTSSRPRACVCASNRVRARPRGT
PMVSMASELSKTAISRMRVAELKQELATRGLESDGIRPVLQARLGQAAEV
QRARNVMDRVHQRPSAYARTASAEADSIAGTPPRLARGASLSKRTGRGPL
SQRARSMSTSLPDPLRSSSKHKYLMQFDGGSRGNPGPSGAGAVLYRLYGS
GARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKL
IIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLA
NVAMDTEISSTFTHPSFGDSAERC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
IPR002156RNaseH_domain
IPR036397RNaseH_sf
IPR036361SAP_dom_sf
IPR012337RNaseH-like_sf