prot_C-linearis_contig106.988.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig106.988.1
Unique Nameprot_C-linearis_contig106.988.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length927
Homology
BLAST of mRNA_C-linearis_contig106.988.1 vs. uniprot
Match: A0A6H5KKS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS1_9PHAE)

HSP 1 Score: 479 bits (1232), Expect = 3.930e-149
Identity = 429/832 (51.56%), Postives = 493/832 (59.25%), Query Frame = 0
Query:    1 GISRSV-----AAAAAAGVGMRKGWKYQLEGNSARWEQRKDGHVTCMSWFPHDKTVGRDGIGGIGEIDDIELPADIRMLAVGYASGKVELVRFPDECGHGERVCVIPAEKRKRPCTAVAWDPENPARLAAAWTK-------------TRGEKSLAIFDIYYIRQWRERRGAHSAKAAAALARVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVCSARTWCWSRAVAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTVGSFGXXXXXXXXXXXXXXXXXAGMLSSMAVGLGGSASGAKPGTSAGQXXXXXXXXXXXXXXXXXXXXXXXXGDGYDDSNGAAAMRWTGASAXXXXXXXXXMSDSVRAGSRAVGFFYASDDAASL---GNGDGVG---IWPVAKGAHGWGSSKAAEDNGRADLGLANEGYASVAWLPGAGGAESVLLAGTGFKLLKVVHIRAATGGDDGLRADGALDSSSATTTTTLRSANIEAHKGAVSGIAVYLDDPRIVATWSDASGEPVKLWRARILRDVGSTSSTGXXXXXXXXXXAPGKGHPSSHTLSPVAVLRPPDKYSSVVDY------------------------------------PCRHEVTKNPISKISWQPPRVRPRRIADSRLPPRVVFPDGGGDGDAPGSAEHLLAFALALAEDELVAATFPQRMLTTNSTMAGPFVENIGPWLEVKTMATSVHGDIGHSKGFHLAEGIYERSGFPTRNGEDAAGISGQERGLREVADEARRAITRSGRPPIMMEVMKWRAQAQYRSDAVYNREVIFDEELAHQLTGS 772
            G +RSV     AAAAAA    ++ WKY LEG S RW+++KDGHVTCMSWFPH +TVG DG+G  G+       ADIRMLAVGY+SGKV LVRF DE GHGE VCV+PAEK+ RPC AVAWDPENP+RLAAAWTK             TR +KSLAI DI+Y+RQWR+RRGA             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXXXXXXXXXXX           F VGSFG        XXXXXXXXX                          XXXXXXXXXXXXX           G+  +D   AAA+R+ G  A          S   R G+R V F  AS   A+    G G   G   IWP+ KG  GW S+ AA +N  ADLG  NEGY S+AWLPG    +SVLLAGTG K LK + +R       G  AD +         + LR   +E HKG V GIAV  +DPRIVATWSD++GEPVKLW++R L  VG  +  G             K   +S + +PVA LRPPDK S VVD                                     P R+E+TK+P+S++SWQPPRV PR IA   L        GGG G A  +A    A A  LAEDE +A TFPQRMLT    + GPFVENIGPW + + MATS HGD+GH+KG   AEG  ERSG  TR GEDAA +SGQE G RE+AD ARR I RSG+PP+M EVMKWRAQAQYRSDAVYNR+ IFDEE+A+Q+ G+
Sbjct:  298 GNARSVMAATSAAAAAATGSTKREWKYHLEGRSKRWKKQKDGHVTCMSWFPHSETVGGDGMG-TGD-------ADIRMLAVGYSSGKVGLVRFSDEPGHGEVVCVVPAEKKNRPCKAVAWDPENPSRLAAAWTKVRRCLYRGGGALMTRSDKSLAICDIHYVRQWRQRRGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSQREGGASGFLVGSFGSVRSGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDETDGVADDDGNNINDV-AAAAVRFRGRRARAGTAPAAD-SFGGRTGNR-VDFLDASGSNAAAVVAGGGSAAGSGEIWPIPKGDCGWDSAVAAAENTHADLGGLNEGYVSLAWLPG---TDSVLLAGTGSKFLKSIDVR-------GRGADSS--------NSVLRI--MEVHKGGVVGIAVLPEDPRIVATWSDSAGEPVKLWKSRSL--VGRNAGGGNV-----------KARDASQSSNPVATLRPPDKTSFVVDVAWCPSRNDLIATVHSNDRKRVCLWDLFEGIKNMCKIPSRYELTKHPVSRVSWQPPRVTPRPIAPWAL-------SGGGSGGATAAAVTE-AIAQVLAEDERIAVTFPQRMLT----VGGPFVENIGPWFQTRAMATSAHGDVGHAKGLREAEGNPERSGLMTRLGEDAASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYNRDTIFDEEVANQVDGA 1068          
BLAST of mRNA_C-linearis_contig106.988.1 vs. uniprot
Match: D7G6M1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M1_ECTSI)

HSP 1 Score: 404 bits (1039), Expect = 2.770e-125
Identity = 241/446 (54.04%), Postives = 289/446 (64.80%), Query Frame = 0
Query:  393 IWPVAKGAHGWGSSKAAEDNGRADLGLANEGYASVAWLPGAGGAESVLLAGTGFKLLKVVHIRAATGGDDGLRADGALDSSSATTTTTLRSANIEAHKGAVSGIAVYLDDPRIVATWSDASGEPVKLWRARILRDVGSTSSTGXXXXXXXXXXAPGKGHPSSHTLSPVAVLRPPDKYSSVVDYPCRHEVTKNPISKISWQPPRVRPRRIADSRLPPRVVFPDGGGDGDAPGSAEHLLAFALALAEDELVAATFPQRMLTTNSTMAGPFVENIGPWLEVKTMATSVHGDIGHSKGFHLAEGIYERSGFPTRNGEDAAGISGQERGLREVADEARRAITRSGRPPIMMEVMKWRAQAQYRSDAVYNREVIFDEELAHQLTGSSVAPYIHPLLPRDWTAATAAGAS--------GTMAVAAADVLAGWHLWNWVARVESLCADRESSAA 830
            IWP+ KG  GW S+ AA +N  ADLG  NEGYAS+AWLPG    +SVLLAGTG K LK + +R    GDD LR+    DSS+    T      +E HKG V  IAV  +DPRIVATWSD+ GEPVKLW++R L  VG     G             K   +S + +PVA LRPPDK S VVD P R+E+TK+P+S++SWQPPRV PR IA   L        G G G A  +A    A    LAEDE +A TFPQRMLT    + GPFVENIGPW + + MATS HGD+GH+KGF  AEG  ERSG  TR GEDAA +SGQE G RE+AD ARR I RSG+PP+M EVMKWRAQAQYRSDAVYNR+ IFDEE+A+Q+ G S +  IHPLL     ++T               MA+A AD+L+GWHLW+WVARVE+LC ++   AA
Sbjct:  285 IWPIPKGDGGWDSAVAAAENAHADLG-GNEGYASLAWLPG---TDSVLLAGTGSKFLKSIDVRGR--GDDALRS---ADSSNVVPRT------MEVHKGGVIRIAVLPEDPRIVATWSDSVGEPVKLWKSRSL--VGRNGGGGNV-----------KARDASQSSNPVATLRPPDKTSFVVDIPSRYELTKHPVSRVSWQPPRVTPRPIAPWAL-------SGAGGGXATAAAAVTKAITQVLAEDERIAVTFPQRMLT----VGGPFVENIGPWFQTRAMATSAHGDVGHTKGFREAEGNPERSGLMTRLGEDAASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYNRDTIFDEEVANQV-GISSSSDIHPLLENRAVSSTTGXXXXXXXXXXXAIMAIATADILSGWHLWDWVARVEALCEEQRVLAA 690          
BLAST of mRNA_C-linearis_contig106.988.1 vs. uniprot
Match: D7FSR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR7_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.720e-17
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 0
Query:    2 ISRSVAAAAAAGVGMRKGWKYQLEGNSARWEQRKDGHVTCMSWFPHDKTVGRDGIGGIGEIDDIELPADIRMLAVGYASGK 82
            +  + +AAAAAG   R+ WKY LEG S RW+++KDGHVTCMSWFPH +TVG DG+G  G        ADIRMLAVGY+SGK
Sbjct:  394 VMAATSAAAAAGSTNRE-WKYHLEGRSKRWKKQKDGHVTCMSWFPHSETVGGDGMGTGG--------ADIRMLAVGYSSGK 465          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.988.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KKS1_9PHAE3.930e-14951.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6M1_ECTSI2.770e-12554.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSR7_ECTSI4.720e-1760.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 273..295
NoneNo IPR availableTMHMMTMhelixcoord: 244..266
NoneNo IPR availableTMHMMTMhelixcoord: 212..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:303371..314988 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.988.1mRNA_C-linearis_contig106.988.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig106 303370..314988 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig106.988.1 ID=prot_C-linearis_contig106.988.1|Name=mRNA_C-linearis_contig106.988.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=927bp
GISRSVAAAAAAGVGMRKGWKYQLEGNSARWEQRKDGHVTCMSWFPHDKT
VGRDGIGGIGEIDDIELPADIRMLAVGYASGKVELVRFPDECGHGERVCV
IPAEKRKRPCTAVAWDPENPARLAAAWTKTRGEKSLAIFDIYYIRQWRER
RGAHSAKAAAALARVGGGGGGLEESNRSVAAATSVAAGGIGAAAGAAGGG
GKRQRVCSARTWCWSRAVAVAVVVVVVVGGGGGGGGGSPVVVAAAAAAVA
LACSGGGGFTVGSFGSARSSDSGGVGGGGGGVAGMLSSMAVGLGGSASGA
KPGTSAGQGGGGGGGGGGVRQGLEEESSDEEEGDGYDDSNGAAAMRWTGA
SAGVGGGGGGGMSDSVRAGSRAVGFFYASDDAASLGNGDGVGIWPVAKGA
HGWGSSKAAEDNGRADLGLANEGYASVAWLPGAGGAESVLLAGTGFKLLK
VVHIRAATGGDDGLRADGALDSSSATTTTTLRSANIEAHKGAVSGIAVYL
DDPRIVATWSDASGEPVKLWRARILRDVGSTSSTGGGGSGGGGGGAPGKG
HPSSHTLSPVAVLRPPDKYSSVVDYPCRHEVTKNPISKISWQPPRVRPRR
IADSRLPPRVVFPDGGGDGDAPGSAEHLLAFALALAEDELVAATFPQRML
TTNSTMAGPFVENIGPWLEVKTMATSVHGDIGHSKGFHLAEGIYERSGFP
TRNGEDAAGISGQERGLREVADEARRAITRSGRPPIMMEVMKWRAQAQYR
SDAVYNREVIFDEELAHQLTGSSVAPYIHPLLPRDWTAATAAGASGTMAV
AAADVLAGWHLWNWVARVESLCADRESSAAAAAVGGIAGAGMAGVGRERG
EVEWNAVGIVDAGVMDLVAEEFEPRAAATTASQPLVRSGGYSPAWSSASC
ATPARHRHPILGCDVFHTPGRARAIRA
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