mRNA_C-linearis_contig106.988.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig106.988.1 vs. uniprot
Match: A0A6H5KKS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS1_9PHAE) HSP 1 Score: 479 bits (1232), Expect = 3.930e-149 Identity = 429/832 (51.56%), Postives = 493/832 (59.25%), Query Frame = 1
Query: 1 GISRSV-----AAAAAAGVGMRKGWKYQLEGNSARWEQRKDGHVTCMSWFPHDKTVGRDGIGGIGEIDDIELPADIRMLAVGYASGKVELVRFPDECGHGERVCVIPAEKRKRPCTAVAWDPENPARLAAAWTK-------------TRGEKSLAIFDIYYIRQWRERRGAHSAKAAAALARVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVCSARTWCWSRAVAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTVGSFGXXXXXXXXXXXXXXXXXAGMLSSMAVGLGGSASGAKPGTSAGQXXXXXXXXXXXXXXXXXXXXXXXXGDGYDDSNGAAAMRWTGASAXXXXXXXXXMSDSVRAGSRAVGFFYASDDAASL---GNGDGVG---IWPVAKGAHGWGSSKAAEDNGRADLGLANEGYASVAWLPGAGGAESVLLAGTGFKLLKVVHIRAATGGDDGLRADGALDSSSATTTTTLRSANIEAHKGAVSGIAVYLDDPRIVATWSDASGEPVKLWRARILRDVGSTSSTGXXXXXXXXXXAPGKGHPSSHTLSPVAVLRPPDKYSSVVDY------------------------------------PCRHEVTKNPISKISWQPPRVRPRRIADSRLPPRVVFPDGGGDGDAPGSAEHLLAFALALAEDELVAATFPQRMLTTNSTMAGPFVENIGPWLEVKTMATSVHGDIGHSKGFHLAEGIYERSGFPTRNGEDAAGISGQERGLREVADEARRAITRSGRPPIMMEVMKWRAQAQYRSDAVYNREVIFDEELAHQLTGS 2316
G +RSV AAAAAA ++ WKY LEG S RW+++KDGHVTCMSWFPH +TVG DG+G G+ ADIRMLAVGY+SGKV LVRF DE GHGE VCV+PAEK+ RPC AVAWDPENP+RLAAAWTK TR +KSLAI DI+Y+RQWR+RRGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX F VGSFG XXXXXXXXX XXXXXXXXXXXXX G+ +D AAA+R+ G A S R G+R V F AS A+ G G G IWP+ KG GW S+ AA +N ADLG NEGY S+AWLPG +SVLLAGTG K LK + +R G AD + + LR +E HKG V GIAV +DPRIVATWSD++GEPVKLW++R L VG + G K +S + +PVA LRPPDK S VVD P R+E+TK+P+S++SWQPPRV PR IA L GGG G A +A A A LAEDE +A TFPQRMLT + GPFVENIGPW + + MATS HGD+GH+KG AEG ERSG TR GEDAA +SGQE G RE+AD ARR I RSG+PP+M EVMKWRAQAQYRSDAVYNR+ IFDEE+A+Q+ G+
Sbjct: 298 GNARSVMAATSAAAAAATGSTKREWKYHLEGRSKRWKKQKDGHVTCMSWFPHSETVGGDGMG-TGD-------ADIRMLAVGYSSGKVGLVRFSDEPGHGEVVCVVPAEKKNRPCKAVAWDPENPSRLAAAWTKVRRCLYRGGGALMTRSDKSLAICDIHYVRQWRQRRGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSQREGGASGFLVGSFGSVRSGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDETDGVADDDGNNINDV-AAAAVRFRGRRARAGTAPAAD-SFGGRTGNR-VDFLDASGSNAAAVVAGGGSAAGSGEIWPIPKGDCGWDSAVAAAENTHADLGGLNEGYVSLAWLPG---TDSVLLAGTGSKFLKSIDVR-------GRGADSS--------NSVLRI--MEVHKGGVVGIAVLPEDPRIVATWSDSAGEPVKLWKSRSL--VGRNAGGGNV-----------KARDASQSSNPVATLRPPDKTSFVVDVAWCPSRNDLIATVHSNDRKRVCLWDLFEGIKNMCKIPSRYELTKHPVSRVSWQPPRVTPRPIAPWAL-------SGGGSGGATAAAVTE-AIAQVLAEDERIAVTFPQRMLT----VGGPFVENIGPWFQTRAMATSAHGDVGHAKGLREAEGNPERSGLMTRLGEDAASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYNRDTIFDEEVANQVDGA 1068
BLAST of mRNA_C-linearis_contig106.988.1 vs. uniprot
Match: D7G6M1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M1_ECTSI) HSP 1 Score: 404 bits (1039), Expect = 2.770e-125 Identity = 241/446 (54.04%), Postives = 289/446 (64.80%), Query Frame = 1
Query: 1177 IWPVAKGAHGWGSSKAAEDNGRADLGLANEGYASVAWLPGAGGAESVLLAGTGFKLLKVVHIRAATGGDDGLRADGALDSSSATTTTTLRSANIEAHKGAVSGIAVYLDDPRIVATWSDASGEPVKLWRARILRDVGSTSSTGXXXXXXXXXXAPGKGHPSSHTLSPVAVLRPPDKYSSVVDYPCRHEVTKNPISKISWQPPRVRPRRIADSRLPPRVVFPDGGGDGDAPGSAEHLLAFALALAEDELVAATFPQRMLTTNSTMAGPFVENIGPWLEVKTMATSVHGDIGHSKGFHLAEGIYERSGFPTRNGEDAAGISGQERGLREVADEARRAITRSGRPPIMMEVMKWRAQAQYRSDAVYNREVIFDEELAHQLTGSSVAPYIHPLLPRDWTAATAAGAS--------GTMAVAAADVLAGWHLWNWVARVESLCADRESSAA 2490
IWP+ KG GW S+ AA +N ADLG NEGYAS+AWLPG +SVLLAGTG K LK + +R GDD LR+ DSS+ T +E HKG V IAV +DPRIVATWSD+ GEPVKLW++R L VG G K +S + +PVA LRPPDK S VVD P R+E+TK+P+S++SWQPPRV PR IA L G G G A +A A LAEDE +A TFPQRMLT + GPFVENIGPW + + MATS HGD+GH+KGF AEG ERSG TR GEDAA +SGQE G RE+AD ARR I RSG+PP+M EVMKWRAQAQYRSDAVYNR+ IFDEE+A+Q+ G S + IHPLL ++T MA+A AD+L+GWHLW+WVARVE+LC ++ AA
Sbjct: 285 IWPIPKGDGGWDSAVAAAENAHADLG-GNEGYASLAWLPG---TDSVLLAGTGSKFLKSIDVRGR--GDDALRS---ADSSNVVPRT------MEVHKGGVIRIAVLPEDPRIVATWSDSVGEPVKLWKSRSL--VGRNGGGGNV-----------KARDASQSSNPVATLRPPDKTSFVVDIPSRYELTKHPVSRVSWQPPRVTPRPIAPWAL-------SGAGGGXATAAAAVTKAITQVLAEDERIAVTFPQRMLT----VGGPFVENIGPWFQTRAMATSAHGDVGHTKGFREAEGNPERSGLMTRLGEDAASLSGQELGQRELADVARRRIARSGKPPLMTEVMKWRAQAQYRSDAVYNRDTIFDEEVANQV-GISSSSDIHPLLENRAVSSTTGXXXXXXXXXXXAIMAIATADILSGWHLWDWVARVEALCEEQRVLAA 690
BLAST of mRNA_C-linearis_contig106.988.1 vs. uniprot
Match: D7FSR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR7_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 4.720e-17 Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 4 ISRSVAAAAAAGVGMRKGWKYQLEGNSARWEQRKDGHVTCMSWFPHDKTVGRDGIGGIGEIDDIELPADIRMLAVGYASGK 246
+ + +AAAAAG R+ WKY LEG S RW+++KDGHVTCMSWFPH +TVG DG+G G ADIRMLAVGY+SGK
Sbjct: 394 VMAATSAAAAAGSTNRE-WKYHLEGRSKRWKKQKDGHVTCMSWFPHSETVGGDGMGTGG--------ADIRMLAVGYSSGK 465 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig106.988.1 >prot_C-linearis_contig106.988.1 ID=prot_C-linearis_contig106.988.1|Name=mRNA_C-linearis_contig106.988.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=927bp GISRSVAAAAAAGVGMRKGWKYQLEGNSARWEQRKDGHVTCMSWFPHDKTback to top mRNA from alignment at C-linearis_contig106:303370..314988- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig106.988.1 ID=mRNA_C-linearis_contig106.988.1|Name=mRNA_C-linearis_contig106.988.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11619bp|location=Sequence derived from alignment at C-linearis_contig106:303370..314988- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig106:303370..314988- >mRNA_C-linearis_contig106.988.1 ID=mRNA_C-linearis_contig106.988.1|Name=mRNA_C-linearis_contig106.988.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5562bp|location=Sequence derived from alignment at C-linearis_contig106:303370..314988- (Chordaria linearis ClinC8C monoicous)back to top |