prot_C-linearis_contig105.943.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig105.943.1
Unique Nameprot_C-linearis_contig105.943.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length173
Homology
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BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 1.090e-70
Identity = 100/118 (84.75%), Postives = 108/118 (91.53%), Query Frame = 0 
Query:   15 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSGCLNIKSCINSGHKLVDWRPTFAGGRVAGTPAP 132
            MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVR++ELT+ HRQCVKPDQ ITIYKL DHETNE++LEFDE IIFQTAC  CLNIKSC+  GHKL+DWRPTFAGGRVAG+  P
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHP 118
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BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.250e-51
Identity = 89/115 (77.39%), Postives = 95/115 (82.61%), Query Frame = 0 
Query:   15 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSGCLNIKSCINSGHKLVDWRPTFA-GGRVAG 128
            MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVR++ELT  HRQCVKPDQ ITIYKL DHETNE++LEFDE IIFQTAC  CLNIKSC+  G        TF  GG+ AG
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLGKVF---SATFGKGGKSAG 112
[Close]
BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 2.430e-28
Identity = 52/113 (46.02%), Postives = 74/113 (65.49%), Query Frame = 0 
Query:   15 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSGCLNIKSCINSGHKLVDWRPTFAGGRVA 127
            MD DG  L++  CN C  NK   + C+ R+HN R++ V+++EL   HRQCVKPDQ +TI+KL D  T EE +E+   +IFQ  C+ C+++K+CI  GH+L DW P    GR +
Sbjct:    1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRAS 113
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0U1_ECTSI1.090e-7084.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LER2_9PHAE1.250e-5177.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T9_ECTSI2.430e-2846.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:157963..162611 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.943.1mRNA_C-linearis_contig105.943.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig105 157962..162611 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig105.943.1 ID=prot_C-linearis_contig105.943.1|Name=mRNA_C-linearis_contig105.943.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=173bp
PNTQQRWRPFLASKMDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMS
TVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSG
CLNIKSCINSGHKLVDWRPTFAGGRVAGTPAPPAVHQKSTPGSGGGGGGG
GGGGGSKKSRGGGTLTRPKGSKG
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