Homology
BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Match:
D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI)
HSP 1 Score: 223 bits (567), Expect = 1.090e-70
Identity = 100/118 (84.75%), Postives = 108/118 (91.53%), Query Frame = 1
Query: 43 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSGCLNIKSCINSGHKLVDWRPTFAGGRVAGTPAP 396
MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVR++ELT+ HRQCVKPDQ ITIYKL DHETNE++LEFDE IIFQTAC CLNIKSC+ GHKL+DWRPTFAGGRVAG+ P
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHP 118
BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Match:
A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)
HSP 1 Score: 182 bits (463), Expect = 1.250e-51
Identity = 89/115 (77.39%), Postives = 95/115 (82.61%), Query Frame = 1
Query: 43 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSGCLNIKSCINSGHKLVDWRPTFA-GGRVAG 384
MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVR++ELT HRQCVKPDQ ITIYKL DHETNE++LEFDE IIFQTAC CLNIKSC+ G TF GG+ AG
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLGKVF---SATFGKGGKSAG 112
BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Match:
D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI)
HSP 1 Score: 120 bits (300), Expect = 2.430e-28
Identity = 52/113 (46.02%), Postives = 74/113 (65.49%), Query Frame = 1
Query: 43 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSGCLNIKSCINSGHKLVDWRPTFAGGRVA 381
MD DG L++ CN C NK + C+ R+HN R++ V+++EL HRQCVKPDQ +TI+KL D T EE +E+ +IFQ C+ C+++K+CI GH+L DW P GR +
Sbjct: 1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRAS 113
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.09e-70 / Id = 84.75 Expect = 1.25e-51 / Id = 77.39 Expect = 2.43e-28 / Id = 46.02 Sequence D7G0U1_ECTSI A0A6H5LER2_9PHAE D7G0T9_ECTSI
Match Name E-value Identity Description
D7G0U1_ECTSI 1.090e-70 84.75 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5LER2_9PHAE 1.250e-51 77.39 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7G0T9_ECTSI 2.430e-28 46.02 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 4 Model size 521 Cds size 519 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927393.9191654-CDS-C-linearis_contig105:157962..158155 1622927393.9191654-CDS-C-linearis_contig105:157962..158155 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 157963..158155 - 1690879674.2019875-CDS-C-linearis_contig105:157962..158155 1690879674.2019875-CDS-C-linearis_contig105:157962..158155 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 157963..158155 - 1622927393.9310358-CDS-C-linearis_contig105:158741..158860 1622927393.9310358-CDS-C-linearis_contig105:158741..158860 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 158742..158860 - 1690879674.2117763-CDS-C-linearis_contig105:158741..158860 1690879674.2117763-CDS-C-linearis_contig105:158741..158860 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 158742..158860 - 1622927393.943295-CDS-C-linearis_contig105:160397..160502 1622927393.943295-CDS-C-linearis_contig105:160397..160502 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 160398..160502 - 1690879674.2231138-CDS-C-linearis_contig105:160397..160502 1690879674.2231138-CDS-C-linearis_contig105:160397..160502 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 160398..160502 - 1622927393.960004-CDS-C-linearis_contig105:162509..162611 1622927393.960004-CDS-C-linearis_contig105:162509..162611 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 162510..162611 - 1690879674.2383482-CDS-C-linearis_contig105:162509..162611 1690879674.2383482-CDS-C-linearis_contig105:162509..162611 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig105 162510..162611 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.943.1
>prot_C-linearis_contig105.943.1 ID=prot_C-linearis_contig105.943.1|Name=mRNA_C-linearis_contig105.943.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=173bp
PNTQQRWRPFLASKMDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMS back to top mRNA from alignment at C-linearis_contig105:157962..162611-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.943.1 ID=mRNA_C-linearis_contig105.943.1|Name=mRNA_C-linearis_contig105.943.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4650bp|location=Sequence derived from alignment at C-linearis_contig105:157962..162611- (Chordaria linearis ClinC8C monoicous)CCAAATACACAGCAGCGTTGGCGGCCTTTCCTAGCCAGCAAGATGGACCA
GGATGGCTTGTTCCTCATGCTCAAGATGTGTAACGGCTGCAGCCACAACA
AG GTGAGAGAGTGAGCCGCCGGTTTCTGAATGGTCGCTGTCGACGAAAGA
CGAGACAGCATCAGGCAGACAAGACCGGCTGCCTGACCTGTGTCCGCGGC
GGTGTTTTTGCCCGCACACGAAAAAAAGGCGTACGTTGTAGCCCGCCCCT
GCTGTCGATGCGCTCAAGAGGTAGCAGCAGCAAGCGTCCGTCGTCTGTCC
TGCTGTAGTTCTTCCAGGGGTCGACGTCGGACATGCTTTGTGTCGAGCTT
CTCGGCGTGACAGGTCAAGCGACCAGACGTCCAAACTATTTCGGCACGAG
AGCATGAGTTCGGGCAGCAGCAGCAGCAGGAGGTCGACGGCGACGAGATA
AAGACCGCTCATGCCCACACCCGACGCACTCGGCACGGCGCCTGCGAATC
GTTTTTTCTCCGCGGCACACGGAATGCTCTACAAGACGCTACGGACCGAC
TCTGGTAGCAGTTCTGCGTTAGTGAGAAACAAAACTCTAATCTAAACATT
ATTAACATTACGTTCTGGACGGTGTTCGCCGCAACAGCAGGCAAAGGCTC
TTGTTTTTCAGCCCAGCCTGCCCGATAAAAAAAGGCGTGTGTTGATCGTC
CACAGCCGCGCGCTTCCCACCTAGGTTCGCCGCGCTCACGAGGAAAGCAA
CCGAACCTCCCACACATTGTTAACAGACAGACAGACATCGCGACAAAACC
TACTTTCGAGTTCCCTCGAGTTTTGTGTCGGAGGGCTTAGGGAGGGGGTG
GGGCGATAGACAGCATGTCCCTGAACATCGAACGAACTCTCACGAGAGGT
TTTGAAATAAGAAATAATCGCGACGGCAGGGGTAAAAAAAAACACCGGTC
AGCTATCTATCTGTCTCCTACGAGGCCGCAGGGTCATGCATGTGGTAGAT
AGGGAAGGTTCGTCGCCCAGGCATGTGCCGTGGGCTTCACCCGCTAGGCT
TCGCTGCTCGACGCGCGTTGGGCAGCTGGCTTAGCTCGGCGGCCACTTTT
CAAAAACGCGCGAGTTGGCGAGAGGGACATCTGTTATCTGTTGCTTTTCA
AAGTCGGTGCCCGTCCTTTCTTTCCCGCGGGCAAGAAATAAAAAATCCAA
GAATCGTCCACAAAACCCGAATTGCAGCGCTGGCTCCAATCAAAAGCTAA
AGTTTGATCATAAAATTATTGGGGTCCTTTGACAGCCTCTCTCGGAAACA
CGCTGCCGTTGTCGGAGGGGTGCGATGCCGTCATTATCTGGTTCTAGTCC
TACATACCTATGTCTAGAAGCACAGACTCGCCTGTACAGAAAACAAAAAA
TTACATGTCGAGCTCCCACGCCGCCGTTTCTAGATGCACCCCAAAAACGA
AAAAAAACGATGGCTTTATGGTGGGTTTCTCCCCGATATATTTGCTGTTG
ACCCGGCAGAGCGTTGCAGGGGAGGTTTATGGCGTTTTCCCAGTTTTAGG
TGTTTTTCTTCTCCACCTATCCCATATTACGTCACTACTCTGTCTGTATT
GAACTGCTGTTGATCACCACTTAGAGATTTGTCTCTTTGATGCCGTTGTG
GTTTATAAAAAACGATGAAATGTCATGGTCGGACAGCACACAAGGCGTTA
TTCGTAACATCGGTTTTGGGGGCAAAACCTTGGGGGCAAAATTAAAATTT
ATTTCCCACCCTCGGTATACTTATACTTTGACGGGTATTTGAAGTATATC
TAAATTGTGATGCGCATACGAACAAATCGTGTTGTCGATTCACGCACAAC
GCCCCCCCCCCACCCGCGCGCGCCCCCCCCTTGTTGCACACTTGGTACGG
CGGTACAACTGATTCCACCATGTTGCAGATCGAGCAGCCAAGCCCCACCA
CGTGCTACTACACGAATAGTATAGACCTGGAACTCGCGCGACTTATTACA
ATGTTGCGATCCTGTTTTTGTTTGTTGCCGGTTGTCTCGTGCTTGTCATC
TTGTCGGCTGGAATGAAACGGCGACTGACTGCGGCGGTGTGGGGTAAAAT
CTCCTGCAGGGAAGCTGGAAAAAATGCATGTCGCGGAGGCACAACCCGAG
GATGTCGACCGTGCGCAAGGAAGAGCTGACTTTCGGCCACCGGCAGTGCG
TCAAGCCAGACCAG GTGAGGAGGAAAATACAAAGGAGAAGAGAAGCATGA
CGTTCGTCTTCTTCTTGTTCTAAATATGTGTGGGTGTTGTCTACATTTGC
TCACCCAAAGACGGTCGTTACTCGGTACGATACGGCGCTCGACCAATGTC
TCCTCGCCGTCCATGTGTTTTTAGCAATGGCCAAAATCGGGTCCACCCGG
ACGGAACCTGGCCAAAATCTATTCAAAGGGCGCCGTCTGATTGGCCAACG
TCCGCCTGGCCCCGACTTTGGCCGCATTTCTGCCGGGTGCACCCGATTCT
GGCTACTACCTGATGAAAACCAGGGTACCCGGTTGTGGCCGGGCTATTCG
ACCAGCAGCCCACACCCGCCAGCGCCCACGCGGCCGCGCTGCGGTGTCCC
TGAGGCAGAAATTTTCGTCCCCGACCTCTCGCGGGGCGTTTTATCGGAAC
TCTTTCAGAACTTTTTTCGATGCCACGGTTACGCATCATGTCATTGCTGG
GTGTGTGGCTCTACCCCTGAATGGATCACAGCAACTCCCCGACACACAAC
ACTCCTTGCGACACTGTGAACACGACACAGAGAAGCGTGAAGGGTTCAAA
CGCCCTCCAGATACACGAGGTGCTTGAAGTGATGTGAAGCAGTCGCGTCA
CGTCATGCGCAGTGCACTGCTGATATGTGTTATGTATGTGCGGCCGAAAA
CTAGCCTTCACACAAAGGGCGCTCCGGTGCTGCCACCGTACATATCGCAC
CCGAACAATTTGACTTCCATGTTCTCTTGTGTACAAATCCCCAGTCAAAT
ACCTACCGTAGAGGGGCAGCGGCAGGGAAATCTGGGTCGGGATTTCCCCG
AAAAGACGGCCTTTGCGTGTTACAGCAGTACACAACTTCCACACATGGAC
GGGTATGTAGTCTACTGCTGTACACAGCTACACATGTTATCTGTTGGTCA
GACTCTAATCGAAAACAAAAGAGTTCCGAAAAAACGTCCCGCGTGAGGGG
CGTCGGGGACGAAAAGTTCTGCCGCAGGGACACCACGCAGCGCGCTGGGG
GCTGTGACGCTGCGGTGACGCGGCCGCATGGGCGCTGGCGGGTGTGGGCT
GCTGGTCGAATAGCCCGGCCACAACCGGGTACCCTGGTGTTCATCGGGTG
TTAGCCAGAATCGGGTGCACCCGGCAGAAATGCGGCCGAAGTCGGGGCCA
GGCGGGCGTTGGCCAATCAGACTGCGCCCTTTGATTAGATGAATATAGGG
TACCCGCTTTTGGCCAGGTTCCGTCCGGGTGGACCCGATTTTGGCCATTG
CTCTTGTTTTTTTGTTTTTTCCCCATGCACCATTATTTTCCCCTCGGGGC
GACACCCCCTCCCCCCGAGCGTTGTCCGTGCCCCCAGCACTAAATGCTGC
ATGTCGGTCATGTACACATTCGATCTGTGTCTGAAGGTGTGGCGGGGCCT
TGCGGATCGTGTCGAACATCGCTGTTAACACCACGTTATGTCCCTCCCCC
TTGTCGTCCTCCTCCCCCCCCCCCCCCCCCCCCCTGCCGGGCCGGGAAAA
GCCCATCACCATCTACAAACTCCGCGACCACGAGACGAACGAGGAGTTCC
TGGAGTTCGACGAGGCCATCATCTTCCAGACGGCATGTTCGGGCTGCCTC
AACATCAAGTCCTGCATCAA GTGAGCAAAATACAAAATACGTGAGCGCTT
TTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTGTCTGCGTTGTGTA
GCGAATACGCGAATACAACCAAGCGTCGGCGCGAAAAATGAAGATGGCGT
GTGTTGCGTGTGTTGCAGCTTCTCGTGCCGAGCGGCTGGTGATACTGGTC
GCTAACATGACGTCAGCAGCAGCAGCGGCAGCGGCAGCAGCTTCGGCAGC
AGCAACAAATTGCTAGTCGGCCAAACATACACAGCAGTTGCCCGTTCGGT
GTTGAAAAATTAAAATTTTCAAACTTCATCGCCGACAAACCCATGTCGCT
GCAAAACAACAGCCCCCCCCCCCCGTTTCCGCTCCGTTGCTCCTCATCCG
CATATTCCCGGTCCGGCGCTTCACCTTACGCTGTCCCGATCAAGCCTAAA
TCATGACCTTATGACCTTACCTTACCTCCTTCGGCTGATGACCTTGTCTT
GTCTGCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CACTCCTACTTGTCGCCGGCCCACTCCCACCACTACCTGCCCTGTGGCAT
GCTCAGCTCCGGTCACAAGTTGGTCGACTGGAGACCAACCTTCGCGGGCG
GGAGAGTGGCAGGCACGCCCGCCCCGCCGGCCGTCCACCAAAAGTCGACG
CCGGGCAGCGGGGGCGGCGGCGGTGGCGGTGGCGGTGGCGGCGGGAGCAA
GAAAAGCAGGGGCGGGGGCACTCTGACCAGACCGAAGGGCAGCAAGGGG back to top Coding sequence (CDS) from alignment at C-linearis_contig105:157962..162611-
>mRNA_C-linearis_contig105.943.1 ID=mRNA_C-linearis_contig105.943.1|Name=mRNA_C-linearis_contig105.943.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at C-linearis_contig105:157962..162611- (Chordaria linearis ClinC8C monoicous) back to top