prot_C-linearis_contig105.942.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig105.942.1
Unique Nameprot_C-linearis_contig105.942.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length485
Homology
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BLAST of mRNA_C-linearis_contig105.942.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 4.050e-38
Identity = 151/339 (44.54%), Postives = 182/339 (53.69%), Query Frame = 0 
Query:   97 RGRRRSSAEDMDMDTDDTTKMEIETESWGVGERPLKRRGRENAPA---AVTPSPKAMHQESFETSSPGHGGEIDEA-----------------------ASKGDDYSPAAXXXXXXXXXXXXXXKTVAEKLELVKIEEAKLLRQFEETHKRSAQASNTGCNEEKAKREEMAEFQRAGEAALRTIQEEKEEALRRISEGRKKKAAERQKLVQRRLKEFEAEEEASRIEAREKDARLEAEKERLAKTTRGGAARNGRGKAADAPNGNXXXTGNREWTADSWTLSGANSAELKRVAAQNARRAGQGAAAK------KPAFVKNEETCEKAAEVAKLLAGTAV 403
            RGRRRS+ E +     D  +MEIET+S  V ERP KRRG+   PA   AVT SPKAM ++SF  S                                   S GD                     TVAE+LELVK EEA+LLR+FEETHKR AQ       EE+AKR+EMA FQRAGEAALR +Q+EKEEAL+RIS  RK KAAER++L+ +R KEFEAEE   RIEARE+DARLEAEKE+LAK +   A               XXX    EW +D W L+G N               G G +AK       P +V++++   KAA VA+LLAG  V
Sbjct:  118 RGRRRSAPEKLG----DIHEMEIETDSSEVCERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSDGD--------AGLGVTSPPPVPTTVAERLELVKGEEAELLREFEETHKRIAQ-------EEEAKRQEMARFQRAGEAALRAMQKEKEEALQRISAERKCKAAERKELLHQRFKEFEAEETELRIEARERDARLEAEKEQLAKDS-SVAXXXXXXXXXXXXXXXXXXXXXPEWASDKWILAGMNGG-------------GGGGSAKLPVAERPPVYVRDQKADAKAAAVARLLAGGVV 423
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.942.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LER2_9PHAE4.050e-3844.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 295..315
NoneNo IPR availableCOILSCoilCoilcoord: 240..290

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:153940..157926 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.942.1mRNA_C-linearis_contig105.942.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig105 153940..157926 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig105.942.1 ID=prot_C-linearis_contig105.942.1|Name=mRNA_C-linearis_contig105.942.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=485bp
VGDGRNALATGRKGGRGGAAAAAAAAAAAADDAPEGNAQGTASPPKPSHK
RKSPGAGGSAAKGSNSKDVGELSVQNGRTTGKRGGRGNPAPVGGTKRGRR
RSSAEDMDMDTDDTTKMEIETESWGVGERPLKRRGRENAPAAVTPSPKAM
HQESFETSSPGHGGEIDEAASKGDDYSPAAPAPPSPPPPPPPVPKTVAEK
LELVKIEEAKLLRQFEETHKRSAQASNTGCNEEKAKREEMAEFQRAGEAA
LRTIQEEKEEALRRISEGRKKKAAERQKLVQRRLKEFEAEEEASRIEARE
KDARLEAEKERLAKTTRGGAARNGRGKAADAPNGNGNGTGNREWTADSWT
LSGANSAELKRVAAQNARRAGQGAAAKKPAFVKNEETCEKAAEVAKLLAG
TAVGGGGDGGGGGGGGGGGRETAGGDVSEEQASGAAGVDGEAKAQGASEQ
TSAAVVPTSAGEEGGGSPPANGETSNGSGEATAAA
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