mRNA_C-linearis_contig105.942.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.942.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.050e-38 Identity = 151/339 (44.54%), Postives = 182/339 (53.69%), Query Frame = 1 Query: 289 RGRRRSSAEDMDMDTDDTTKMEIETESWGVGERPLKRRGRENAPA---AVTPSPKAMHQESFETSSPGHGGEIDEA-----------------------ASKGDDYSPAAXXXXXXXXXXXXXXKTVAEKLELVKIEEAKLLRQFEETHKRSAQASNTGCNEEKAKREEMAEFQRAGEAALRTIQEEKEEALRRISEGRKKKAAERQKLVQRRLKEFEAEEEASRIEAREKDARLEAEKERLAKTTRGGAARNGRGKAADAPNGNXXXTGNREWTADSWTLSGANSAELKRVAAQNARRAGQGAAAK------KPAFVKNEETCEKAAEVAKLLAGTAV 1209
RGRRRS+ E + D +MEIET+S V ERP KRRG+ PA AVT SPKAM ++SF S S GD TVAE+LELVK EEA+LLR+FEETHKR AQ EE+AKR+EMA FQRAGEAALR +Q+EKEEAL+RIS RK KAAER++L+ +R KEFEAEE RIEARE+DARLEAEKE+LAK + A XXX EW +D W L+G N G G +AK P +V++++ KAA VA+LLAG V
Sbjct: 118 RGRRRSAPEKLG----DIHEMEIETDSSEVCERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSDGD--------AGLGVTSPPPVPTTVAERLELVKGEEAELLREFEETHKRIAQ-------EEEAKRQEMARFQRAGEAALRAMQKEKEEALQRISAERKCKAAERKELLHQRFKEFEAEETELRIEARERDARLEAEKEQLAKDS-SVAXXXXXXXXXXXXXXXXXXXXXPEWASDKWILAGMNGG-------------GGGGSAKLPVAERPPVYVRDQKADAKAAAVARLLAGGVV 423 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.942.1 >prot_C-linearis_contig105.942.1 ID=prot_C-linearis_contig105.942.1|Name=mRNA_C-linearis_contig105.942.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=485bp VGDGRNALATGRKGGRGGAAAAAAAAAAAADDAPEGNAQGTASPPKPSHKback to top mRNA from alignment at C-linearis_contig105:153940..157926- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.942.1 ID=mRNA_C-linearis_contig105.942.1|Name=mRNA_C-linearis_contig105.942.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3987bp|location=Sequence derived from alignment at C-linearis_contig105:153940..157926- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:153940..157926- >mRNA_C-linearis_contig105.942.1 ID=mRNA_C-linearis_contig105.942.1|Name=mRNA_C-linearis_contig105.942.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2910bp|location=Sequence derived from alignment at C-linearis_contig105:153940..157926- (Chordaria linearis ClinC8C monoicous)back to top |