prot_C-linearis_contig105.927.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig105.927.1
Unique Nameprot_C-linearis_contig105.927.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length137
Homology
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A126WVC6_9PHAE (Putative LOV domain-containing protein n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A126WVC6_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 7.100e-98
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0
Query:    1 MMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 136
            MMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGY+KEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDG+TFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA
Sbjct:   33 MMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYAKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 168          
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A126X2E3_9PHAE (Putative LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126X2E3_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 6.340e-89
Identity = 119/136 (87.50%), Postives = 129/136 (94.85%), Query Frame = 0
Query:    1 MMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 136
            MMNGP NS++VSYCVTDPDLEDNPIIFCSDGFA+FTGY+K+EVEGRNCRFLQGAKTDPGD+TKIREAV EKKEACLCLLNYKKDG+ FHNQFFLTP+FDAEG LAY+LGIQVQVKT A GQEP NPGW+YTMGLHA
Sbjct:   30 MMNGPNNSRIVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKDEVEGRNCRFLQGAKTDPGDITKIREAVKEKKEACLCLLNYKKDGSIFHNQFFLTPLFDAEGKLAYYLGIQVQVKTGADGQEPENPGWVYTMGLHA 165          
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A6H5L122_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L122_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.580e-88
Identity = 119/136 (87.50%), Postives = 128/136 (94.12%), Query Frame = 0
Query:    1 MMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 136
            MMNGP+NS+VVSYCVTDPDLEDNPIIFCSDGFA+FTGY+KEEVEGRNCRFLQGAKTDPGD  KIREA+ E KEACLCLLNYKKDG+TFHNQFFLTP+FD  GTLAYFLGIQVQVKTA+ GQEP NPGW+YTMGLHA
Sbjct:   30 MMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDTAKIREAIKENKEACLCLLNYKKDGSTFHNQFFLTPLFDEGGTLAYFLGIQVQVKTASDGQEPENPGWVYTMGLHA 165          
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A126WXS3_9PHAE (Putative LOV domain-containing protein n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A126WXS3_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 1.260e-84
Identity = 115/136 (84.56%), Postives = 126/136 (92.65%), Query Frame = 0
Query:    1 MMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 136
            M++GP++SK +SYCVTDPDL DNPIIFCSDGFA FTGY KEEVEGRNCRFLQGAKTDPGDV KIR AV+EK+EACLCLLNYKKDG+TF+NQFFLTP+FDAEGTLAYFLGIQVQVKT   GQEP NPGW+YTMGLHA
Sbjct:   32 MLSGPDHSKNISYCVTDPDLHDNPIIFCSDGFASFTGYDKEEVEGRNCRFLQGAKTDPGDVAKIRSAVSEKREACLCLLNYKKDGSTFNNQFFLTPLFDAEGTLAYFLGIQVQVKTGDKGQEPENPGWVYTMGLHA 167          
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A126WZ19_SARFS (Putative LOV domain-containing protein n=6 Tax=Sargassum TaxID=3015 RepID=A0A126WZ19_SARFS)

HSP 1 Score: 206 bits (524), Expect = 7.100e-66
Identity = 92/135 (68.15%), Postives = 115/135 (85.19%), Query Frame = 0
Query:    1 MMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPA-NPGWIYTMGL 134
            M+NGP++SK + YCV+DPDL DNPIIFCSDGF++  GY++EEVEGRNCRFLQGAKTDPGD+ +IR+A+ E KEACLCL+NYKKDG+ F+NQF+L P+FDA G LAYFLGIQV+V+T    Q+P  N GW++TM L
Sbjct:   32 MLNGPDHSKTLCYCVSDPDLGDNPIIFCSDGFSELVGYTREEVEGRNCRFLQGAKTDPGDIAEIRDAIKENKEACLCLINYKKDGSAFNNQFYLVPLFDAGGQLAYFLGIQVEVETLDDEQQPPKNLGWLHTMCL 166          
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A6U0JAP0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JAP0_9STRA)

HSP 1 Score: 177 bits (450), Expect = 5.730e-54
Identity = 76/126 (60.32%), Postives = 98/126 (77.78%), Query Frame = 0
Query:   11 VSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 136
            VS+C+ DPD ED PI+F SDGF +FTGY+  E+EGRNCRFLQG  T+  DV KIR A+  +KE  + LLNYKKDGT+F+N+FFL+P+++ +G LAY++G+Q  VK   PGQ PANPGW+Y  GLHA
Sbjct:   91 VSFCLCDPDQEDCPIVFASDGFCNFTGYAVSEIEGRNCRFLQGPGTEKADVDKIRSAIKSEKEESVNLLNYKKDGTSFNNEFFLSPLYEEDGKLAYYIGVQCSVKKLGPGQAPANPGWVYAQGLHA 216          
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A7S4J4U8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J4U8_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.450e-51
Identity = 74/126 (58.73%), Postives = 96/126 (76.19%), Query Frame = 0
Query:   11 VSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 136
            V +CV DPDL+D PIIF SDGF DFTGYS EE+EG+NCRFLQG +T   DV +IR+A+ E+KE C+ LLNY+KDG++F N+FF++P+ D    LAYF+G+Q  V    PGQ P+N GW+Y+ G HA
Sbjct:   55 VCFCVCDPDLKDMPIIFSSDGFCDFTGYSHEEIEGKNCRFLQGTETSTEDVDRIRKAIKEQKEECVNLLNYRKDGSSFINEFFISPLLDDNEKLAYFIGVQCSVPKKGPGQMPSNAGWVYSQGNHA 180          
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A126WWA7_9STRA (Putative LOV domain-containing protein n=1 Tax=Synura petersenii TaxID=52555 RepID=A0A126WWA7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.540e-50
Identity = 77/134 (57.46%), Postives = 97/134 (72.39%), Query Frame = 0
Query:    2 MNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLH 135
            M G   +K V Y VTDPDL+DNPI+F S+GF  +TGY K E+EGRNCRFLQGA TDP D++ IR+A+ ++ +  +C+ NY K+G  F NQFF+ P+ D    LAYFLG+QV V   APGQ+  NPGWIYTMG H
Sbjct:   66 MLGMNENKNVCYLVTDPDLDDNPIVFTSEGFCKYTGYEKNEIEGRNCRFLQGAGTDPKDISLIRDAIRKEIDVNVCIQNYCKNGKPFMNQFFMCPLRDENKKLAYFLGVQVVVPKKAPGQQQENPGWIYTMGNH 199          
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A1E7EP39_9STRA (PAS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EP39_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.120e-49
Identity = 74/128 (57.81%), Postives = 95/128 (74.22%), Query Frame = 0
Query:    9 KVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 136
            + VS+C+ DPD +D PIIF SDGF +FTGY  +E+EGRNCRFLQG  T   D+  IR+AV E+ EA + LLNY+KDGT+F NQFFL P+  ++ TL YF+G+Q  V+   PGQ P+N GWIY+ GLHA
Sbjct:   58 EAVSFCICDPDQKDCPIIFASDGFCNFTGYDCQEIEGRNCRFLQGPDTKKEDIDTIRQAVKEETEASVNLLNYRKDGTSFANQFFLAPLRGSDSTLLYFIGVQCSVEKLGPGQAPSNVGWIYSQGLHA 185          
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A835ZDN1_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.010e-48
Identity = 73/127 (57.48%), Postives = 95/127 (74.80%), Query Frame = 0
Query:   11 VSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAE-GTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 136
            + + VTDPDLEDNPI+F S+GF+ +TGY+K E+EGRNCRFLQG +T+P DV  IR A+  + +A +CLLNY+KDGT F NQFF+ P+ DA  G +AY+LG+Q  V+    GQ   N GW+Y MGLHA
Sbjct:   51 ICWVVTDPDLEDNPIVFSSEGFSRYTGYAKSEIEGRNCRFLQGKETNPADVETIRAAIGAQTDANVCLLNYRKDGTAFLNQFFICPLHDAATGAVAYYLGVQAAVRQKEGGQTQKNAGWVYQMGLHA 177          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A126WVC6_9PHAE7.100e-9898.53Putative LOV domain-containing protein n=2 Tax=Ect... [more]
A0A126X2E3_9PHAE6.340e-8987.50Putative LOV domain-containing protein n=2 Tax=Scy... [more]
A0A6H5L122_9PHAE2.580e-8887.50PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A126WXS3_9PHAE1.260e-8484.56Putative LOV domain-containing protein n=1 Tax=Des... [more]
A0A126WZ19_SARFS7.100e-6668.15Putative LOV domain-containing protein n=6 Tax=Sar... [more]
A0A6U0JAP0_9STRA5.730e-5460.32Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S4J4U8_9STRA1.450e-5158.73Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A126WWA7_9STRA1.540e-5057.46Putative LOV domain-containing protein n=1 Tax=Syn... [more]
A0A1E7EP39_9STRA1.120e-4957.81PAS domain-containing protein n=1 Tax=Fragilariops... [more]
A0A835ZDN1_9STRA1.010e-4857.48PAS domain-containing protein n=1 Tax=Tribonema mi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 21..110
e-value: 1.5E-9
score: 36.0
IPR000014PAS domainPFAMPF13426PAS_9coord: 19..112
e-value: 3.1E-19
score: 69.2
IPR000014PAS domainPROSITEPS50112PAScoord: 21..47
score: 8.59
NoneNo IPR availableGENE3D3.30.450.20coord: 12..125
e-value: 1.3E-40
score: 140.8
NoneNo IPR availablePANTHERPTHR47429FAMILY NOT NAMEDcoord: 12..117
NoneNo IPR availablePANTHERPTHR47429:SF2PROTEIN TWIN LOV 1coord: 12..117
IPR035965PAS domain superfamilySUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 14..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:26220..28661 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.927.1mRNA_C-linearis_contig105.927.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig105 24663..34322 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig105.927.1 ID=prot_C-linearis_contig105.927.1|Name=mRNA_C-linearis_contig105.927.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=137bp
MMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRF
LQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDA
EGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000014PAS
IPR035965PAS-like_dom_sf