mRNA_C-linearis_contig105.927.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A126WVC6_9PHAE (Putative LOV domain-containing protein n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A126WVC6_9PHAE) HSP 1 Score: 333 bits (853), Expect = 7.180e-108 Identity = 159/166 (95.78%), Postives = 163/166 (98.19%), Query Frame = 3 Query: 3 GAQSAEAAGTAGTPFKPTKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 500
GAQSAE T+GTPFKP+KLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGY+KEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDG+TFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA
Sbjct: 3 GAQSAETTPTSGTPFKPSKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYAKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 168
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A126X2E3_9PHAE (Putative LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126X2E3_9PHAE) HSP 1 Score: 303 bits (777), Expect = 1.450e-96 Identity = 143/166 (86.14%), Postives = 154/166 (92.77%), Query Frame = 3 Query: 3 GAQSAEAAGTAGTPFKPTKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 500
GAQSAE +GTPFKP KLLSVKDTILVDMMNGP NS++VSYCVTDPDLEDNPIIFCSDGFA+FTGY+K+EVEGRNCRFLQGAKTDPGD+TKIREAV EKKEACLCLLNYKKDG+ FHNQFFLTP+FDAEG LAY+LGIQVQVKT A GQEP NPGW+YTMGLHA
Sbjct: 3 GAQSAE---PSGTPFKPAKLLSVKDTILVDMMNGPNNSRIVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKDEVEGRNCRFLQGAKTDPGDITKIREAVKEKKEACLCLLNYKKDGSIFHNQFFLTPLFDAEGKLAYYLGIQVQVKTGADGQEPENPGWVYTMGLHA 165
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A6H5L122_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L122_9PHAE) HSP 1 Score: 300 bits (769), Expect = 2.260e-95 Identity = 142/166 (85.54%), Postives = 153/166 (92.17%), Query Frame = 3 Query: 3 GAQSAEAAGTAGTPFKPTKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 500
GAQSAE +AGTPF P K+LSVKDTILVDMMNGP+NS+VVSYCVTDPDLEDNPIIFCSDGFA+FTGY+KEEVEGRNCRFLQGAKTDPGD KIREA+ E KEACLCLLNYKKDG+TFHNQFFLTP+FD GTLAYFLGIQVQVKTA+ GQEP NPGW+YTMGLHA
Sbjct: 3 GAQSAE---SAGTPFVPNKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDTAKIREAIKENKEACLCLLNYKKDGSTFHNQFFLTPLFDEGGTLAYFLGIQVQVKTASDGQEPENPGWVYTMGLHA 165
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A126WXS3_9PHAE (Putative LOV domain-containing protein n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A126WXS3_9PHAE) HSP 1 Score: 287 bits (734), Expect = 3.900e-90 Identity = 134/166 (80.72%), Postives = 148/166 (89.16%), Query Frame = 3 Query: 3 GAQSAEAAGTAGTPFKPTKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 500
GA+ + + GTPF P KLLSVKDTILVDM++GP++SK +SYCVTDPDL DNPIIFCSDGFA FTGY KEEVEGRNCRFLQGAKTDPGDV KIR AV+EK+EACLCLLNYKKDG+TF+NQFFLTP+FDAEGTLAYFLGIQVQVKT GQEP NPGW+YTMGLHA
Sbjct: 2 GAEQSASTEPLGTPFVPRKLLSVKDTILVDMLSGPDHSKNISYCVTDPDLHDNPIIFCSDGFASFTGYDKEEVEGRNCRFLQGAKTDPGDVAKIRSAVSEKREACLCLLNYKKDGSTFNNQFFLTPLFDAEGTLAYFLGIQVQVKTGDKGQEPENPGWVYTMGLHA 167
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A126WZ19_SARFS (Putative LOV domain-containing protein n=6 Tax=Sargassum TaxID=3015 RepID=A0A126WZ19_SARFS) HSP 1 Score: 236 bits (601), Expect = 1.780e-70 Identity = 108/165 (65.45%), Postives = 136/165 (82.42%), Query Frame = 3 Query: 3 GAQSAEAAGTAGTPFKPTKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPA-NPGWIYTMGL 494
GA+ + ++ GTPF P K LSVKD I+VDM+NGP++SK + YCV+DPDL DNPIIFCSDGF++ GY++EEVEGRNCRFLQGAKTDPGD+ +IR+A+ E KEACLCL+NYKKDG+ F+NQF+L P+FDA G LAYFLGIQV+V+T Q+P N GW++TM L
Sbjct: 2 GAEQSSSSDLLGTPFVPKKQLSVKDVIIVDMLNGPDHSKTLCYCVSDPDLGDNPIIFCSDGFSELVGYTREEVEGRNCRFLQGAKTDPGDIAEIRDAIKENKEACLCLINYKKDGSAFNNQFYLVPLFDAGGQLAYFLGIQVEVETLDDEQQPPKNLGWLHTMCL 166
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A6U0JAP0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JAP0_9STRA) HSP 1 Score: 188 bits (477), Expect = 8.070e-52 Identity = 85/152 (55.92%), Postives = 111/152 (73.03%), Query Frame = 3 Query: 45 FKPTKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 500
F K LS +D +VDM+N + V S+C+ DPD ED PI+F SDGF +FTGY+ E+EGRNCRFLQG T+ DV KIR A+ +KE + LLNYKKDGT+F+N+FFL+P+++ +G LAY++G+Q VK PGQ PANPGW+Y GLHA
Sbjct: 66 FVAKKELSERDATIVDMLNSAGHEDV-SFCLCDPDQEDCPIVFASDGFCNFTGYAVSEIEGRNCRFLQGPGTEKADVDKIRSAIKSEKEESVNLLNYKKDGTSFNNEFFLSPLYEEDGKLAYYIGVQCSVKKLGPGQAPANPGWVYAQGLHA 216
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A7S4J4U8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J4U8_9STRA) HSP 1 Score: 183 bits (464), Expect = 1.880e-50 Identity = 82/152 (53.95%), Postives = 111/152 (73.03%), Query Frame = 3 Query: 45 FKPTKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 500
F+P K L +D ++DM+N + + V +CV DPDL+D PIIF SDGF DFTGYS EE+EG+NCRFLQG +T DV +IR+A+ E+KE C+ LLNY+KDG++F N+FF++P+ D LAYF+G+Q V PGQ P+N GW+Y+ G HA
Sbjct: 30 FEPEKRLCERDYTIIDMLNS-KGHESVCFCVCDPDLKDMPIIFSSDGFCDFTGYSHEEIEGKNCRFLQGTETSTEDVDRIRKAIKEQKEECVNLLNYRKDGSSFINEFFISPLLDDNEKLAYFIGVQCSVPKKGPGQMPSNAGWVYSQGNHA 180
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A835ZDN1_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN1_9STRA) HSP 1 Score: 182 bits (463), Expect = 2.370e-50 Identity = 87/158 (55.06%), Postives = 113/158 (71.52%), Query Frame = 3 Query: 30 TAGTPFKPTKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAE-GTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 500
TA F+P+K L KD ILVDM+N + + + VTDPDLEDNPI+F S+GF+ +TGY+K E+EGRNCRFLQG +T+P DV IR A+ + +A +CLLNY+KDGT F NQFF+ P+ DA G +AY+LG+Q V+ GQ N GW+Y MGLHA
Sbjct: 21 TASGDFEPSKELKPKDMILVDMLNSRDEPDIC-WVVTDPDLEDNPIVFSSEGFSRYTGYAKSEIEGRNCRFLQGKETNPADVETIRAAIGAQTDANVCLLNYRKDGTAFLNQFFICPLHDAATGAVAYYLGVQAAVRQKEGGQTQKNAGWVYQMGLHA 177
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A126WWA7_9STRA (Putative LOV domain-containing protein n=1 Tax=Synura petersenii TaxID=52555 RepID=A0A126WWA7_9STRA) HSP 1 Score: 178 bits (452), Expect = 1.810e-48 Identity = 86/151 (56.95%), Postives = 107/151 (70.86%), Query Frame = 3 Query: 45 FKPTKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLH 497
F K L KD I+VDM+ EN K V Y VTDPDL+DNPI+F S+GF +TGY K E+EGRNCRFLQGA TDP D++ IR+A+ ++ + +C+ NY K+G F NQFF+ P+ D LAYFLG+QV V APGQ+ NPGWIYTMG H
Sbjct: 50 FISQKKLCPKDQIVVDMLGMNEN-KNVCYLVTDPDLDDNPIVFTSEGFCKYTGYEKNEIEGRNCRFLQGAGTDPKDISLIRDAIRKEIDVNVCIQNYCKNGKPFMNQFFMCPLRDENKKLAYFLGVQVVVPKKAPGQQQENPGWIYTMGNH 199
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Match: A0A1E7EP39_9STRA (PAS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EP39_9STRA) HSP 1 Score: 177 bits (448), Expect = 4.190e-48 Identity = 83/152 (54.61%), Postives = 109/152 (71.71%), Query Frame = 3 Query: 45 FKPTKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGTTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 500
F P K LS +D ++DM+N + + VS+C+ DPD +D PIIF SDGF +FTGY +E+EGRNCRFLQG T D+ IR+AV E+ EA + LLNY+KDGT+F NQFFL P+ ++ TL YF+G+Q V+ PGQ P+N GWIY+ GLHA
Sbjct: 35 FIPEKPLSERDMTIMDMINSVGH-EAVSFCICDPDQKDCPIIFASDGFCNFTGYDCQEIEGRNCRFLQGPDTKKEDIDTIRQAVKEETEASVNLLNYRKDGTSFANQFFLAPLRGSDSTLLYFIGVQCSVEKLGPGQAPSNVGWIYSQGLHA 185 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.927.1 >prot_C-linearis_contig105.927.1 ID=prot_C-linearis_contig105.927.1|Name=mRNA_C-linearis_contig105.927.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=137bp MMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYSKEEVEGRNCRFback to top mRNA from alignment at C-linearis_contig105:24663..34322- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.927.1 ID=mRNA_C-linearis_contig105.927.1|Name=mRNA_C-linearis_contig105.927.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9660bp|location=Sequence derived from alignment at C-linearis_contig105:24663..34322- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:24663..34322- >mRNA_C-linearis_contig105.927.1 ID=mRNA_C-linearis_contig105.927.1|Name=mRNA_C-linearis_contig105.927.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at C-linearis_contig105:24663..34322- (Chordaria linearis ClinC8C monoicous)back to top |