prot_C-linearis_contig104.884.1 (polypeptide) Chordaria linearis ClinC8C monoicous
You are viewing a polypeptide, more information available on the corresponding mRNA page
Overview
Homology
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI) HSP 1 Score: 244 bits (622), Expect = 3.980e-80 Identity = 112/118 (94.92%), Postives = 116/118 (98.31%), Query Frame = 0 Query: 1 MADTMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 118 MADTMRFCSECNNIMHPKENK DRKL+Y+CNRC Y+EDAQSGSC+YRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS Sbjct: 120 MADTMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA) HSP 1 Score: 168 bits (425), Expect = 6.620e-52 Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 0 Query: 5 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 117 MRFC ECNNI+HPKEN+ R L YACNRC+Y+E+A SC+Y NNL+ T KLDIV DVV+DPTLQRSK+ IC++CNY+EAVFFQAD+ AKS SLSLIFVCT+ CG KWV Sbjct: 1 MRFCKECNNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI) HSP 1 Score: 124 bits (311), Expect = 1.700e-34 Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 0 Query: 4 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116 TM+FC ECNNI++P+ENKA+++L YAC RC + EDA+ SC+YRN + TA + ++Q DV DPTL RSK C C + EAVFFQA + + ++L FVC N C H+W Sbjct: 3 TMKFCRECNNILYPRENKAEKRLEYACGRCDFSEDAEQ-SCVYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQATSRGE-EGMTLFFVCCNPNCQHRW 112
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A1B6PTV6_SORBI (DNA-directed RNA polymerase subunit n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6PTV6_SORBI) HSP 1 Score: 120 bits (301), Expect = 5.620e-33 Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 0 Query: 4 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116 TMRFC ECNNI++PKE++A++ L+YAC C ++E A S +C+YRN + AG ++ DV DPTL R+K+ C C + EAVFFQA + ++L FVC N +CGH+W Sbjct: 3 TMRFCRECNNILYPKEDRANKVLLYACRNCEHQEVADS-NCVYRNVVDHDAGELTQVLSEDVASDPTLPRTKSVRCAACGHGEAVFFQATTRGED-GMALFFVCCNPSCGHRW 113
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A7S3NJ32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ32_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.280e-32 Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 0 Query: 6 RFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 117 RFC +C N+ P+E + R L+ C C Y+E A S +Y N + +LDI+ ++ DDPTLQRS + +CE CNY+EAV FQA+ G ++SLSLIFVC N C HKW+ Sbjct: 34 RFCPQCGNMWQPREERTTRTLMLNCRNCGYEEPATSYK-VYENRIKKEVSTRLDIINPEITDDPTLQRSNDVVCENCNYSEAVLFQAESGITAKSLSLIFVCCN--CKHKWI 142
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: B8BUI2_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUI2_THAPS) HSP 1 Score: 118 bits (296), Expect = 2.960e-32 Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 0 Query: 5 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEG-AKSQSLSLIFVCTNRACGHKWVS 118 MRFC +++++PKEN+ +RKL+YAC C Y E A G IY+N L GN L V + V DDPTL RS+NA C+KC +NEAVFFQ+D ++ +L+LIFVC N C HKWV+ Sbjct: 1 MRFCPHDSSMLYPKENRNERKLLYACRLCRYTEYAP-GQLIYQNILKKEVGNVLHTVPSAVSDDPTLPRSQNAHCDKCGHNEAVFFQSDTSDVRNDTLALIFVCCN--CDHKWVA 112
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A8H7UCI9_9FUNG (DNA-directed RNA polymerase subunit n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7UCI9_9FUNG) HSP 1 Score: 117 bits (293), Expect = 8.960e-32 Identity = 51/114 (44.74%), Postives = 81/114 (71.05%), Query Frame = 0 Query: 4 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 117 + ++CSECNN+++P+E+K +RKL++AC C ++EDA + +C+YR+ ++ A ++ +V TD+ DPTL R+ A C +C Y EAVFFQ+ ++L +VC NRACGH+WV Sbjct: 3 SFKYCSECNNMLYPREDKTNRKLLFACRNCHFEEDADN-NCVYRHEIVH-APSEQTMVLTDLSADPTLPRTTTA-CPRCGYQEAVFFQSAARRADTKMTLFYVCCNRACGHRWV 113
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A843UFX2_COLES (TFIIS-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UFX2_COLES) HSP 1 Score: 120 bits (302), Expect = 1.230e-31 Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 0 Query: 4 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116 TM+FC ECNNI++PKE++ + L+YAC C ++E A + +C+YRN + + G + ++Q DV DPTL R+KN C KCN+ EAVFFQA + + ++L FVC N +CGH+W Sbjct: 129 TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVADN-NCVYRNEIHHSVGERTQVLQ-DVAADPTLPRTKNVRCAKCNHPEAVFFQAAARGE-EGMTLFFVCCNPSCGHRW 238
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: UPI001D0951AA (DNA-directed RNA polymerase II subunit RPB9 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D0951AA) HSP 1 Score: 117 bits (293), Expect = 1.520e-31 Identity = 55/112 (49.11%), Postives = 73/112 (65.18%), Query Frame = 0 Query: 5 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116 +RFC ECNN+++PKE+K ++ L+YAC C YK+ A S +CIY N ++ IV DVV DPTL RS++ C KCNY EAVFFQA + + L +VCTN C H+W Sbjct: 21 IRFCQECNNMLYPKEDKENKVLLYACRNCDYKQLADS-NCIYVNKIMHEIDELTHIVP-DVVSDPTLPRSEDHHCPKCNYREAVFFQAQTRRAEEEMRLYYVCTNPQCTHRW 130
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A8B7CCB1_PHODC (DNA-directed RNA polymerase subunit n=3 Tax=Arecaceae TaxID=4710 RepID=A0A8B7CCB1_PHODC) HSP 1 Score: 116 bits (291), Expect = 1.800e-31 Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = 0 Query: 5 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116 M+FC ECNNI++PKE+K + L++AC C Y+E A S C+YRN + G + I+Q DV +DPTL R+K+ C KC++ EAVFFQA + + ++L FVC N ACG++W Sbjct: 4 MKFCRECNNILYPKEDKQKKILLFACRNCDYEEVADS-FCVYRNEVHHAVGERTQILQ-DVANDPTLPRTKDVRCVKCDHPEAVFFQASSRGE-EGMTLFFVCCNPACGYRW 112 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_C-linearis_contig104.884.1 ID=prot_C-linearis_contig104.884.1|Name=mRNA_C-linearis_contig104.884.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=119bpback to top |