prot_C-linearis_contig103.858.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig103.858.1
Unique Name	prot_C-linearis_contig103.858.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	255

Homology

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BLAST of mRNA_C-linearis_contig103.858.1 vs. uniprot
Match: D7FMG4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG4_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 1.570e-73
Identity = 145/233 (62.23%), Postives = 165/233 (70.82%), Query Frame = 0

Query:   38 AVFVADAAGMPGSPVISHLAKSGRFSARAHR-GSSIVLALPDAADPGCRALVPYTASPPARGPAVSLPAPPPLLVLPVS-----PS-------SSCRASP----GEAEAGEAVVHRLDIPLEVFPVVFQYMDAPTLCSVSSVSREWRKQGNDDQYWRRLCRARFNVTPDSFAPPPDPIKRLYQLQHGSFKAMCRGERRISTLRGCRHGFHT-APPSISRNTSAQLLGLMMMSN 252
            AV  +DA G   + + SH++K GRFS R  R G+SIVL LP+A  PGCRALVPYTASP AR   + LPA PPLL LP S     PS       SSC +S     G  + G A   R+DIPLEVFP+ FQYMDA TLC+VSSVSREW+KQGNDDQYWR LCRARFNV PD+FAPPPDPIKRLYQLQHGSFKAMCRG+RR        HG H+ APP I R+TSAQLL  ++ SN
Sbjct:   43 AVDDSDAGGEGSTKIFSHISKGGRFSDRGEREGTSIVL-LPEAG-PGCRALVPYTASP-ARS-RLPLPAHPPLLALPPSLGCDAPSLYSSCSLSSCNSSSSSPNGSFKGGAA--RRVDIPLEVFPIAFQYMDALTLCTVSSVSREWKKQGNDDQYWRHLCRARFNVIPDAFAPPPDPIKRLYQLQHGSFKAMCRGDRR--------HGLHSGAPPVIPRHTSAQLLVGLLASN 261

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig103.858.1 vs. uniprot

BLAST of mRNA_C-linearis_contig103.858.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FMG4_ECTSI	1.570e-73	62.23	F-box domain-containing protein n=1 Tax=Ectocarpus...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 139..179 e-value: 9.5E-4 score: 28.5
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 138..181 e-value: 2.5E-7 score: 30.5
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 133..179 score: 11.829
None	No IPR available	GENE3D	1.20.1280.50		coord: 129..221 e-value: 9.4E-11 score: 43.5
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 126..202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig103	contig	C-linearis_contig103:536588..539453 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig103.858.1	mRNA_C-linearis_contig103.858.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig103 535452..540844 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig103.858.1 ID=prot_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp
MTSPQCSPAGKEEDPGNTKEKRSHAAPRRSSRESFDAAVFVADAAGMPGS
PVISHLAKSGRFSARAHRGSSIVLALPDAADPGCRALVPYTASPPARGPA
VSLPAPPPLLVLPVSPSSSCRASPGEAEAGEAVVHRLDIPLEVFPVVFQY
MDAPTLCSVSSVSREWRKQGNDDQYWRRLCRARFNVTPDSFAPPPDPIKR
LYQLQHGSFKAMCRGERRISTLRGCRHGFHTAPPSISRNTSAQLLGLMMM
SNAM*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR036047	F-box-like_dom_sf