mRNA_C-linearis_contig103.858.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.858.1 vs. uniprot
Match: D7FMG4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG4_ECTSI) HSP 1 Score: 234 bits (596), Expect = 3.770e-68 Identity = 159/280 (56.79%), Postives = 183/280 (65.36%), Query Frame = 1 Query: 244 LSMTSPQCSPAGKEEDPGNTKEKRSHAAPRRSS--------RESFDAAVFVADAAGMPGSPVISHLAKSGRFSARAHR-GSSIVLALPDAADPGCRALVPYTASPPARGPAVSLPAPPPLLVLPVS-----PS-------SSCRASP----GEAEAGEAVVHRLDIPLEVFPVVFQYMDAPTLCSVSSVSREWRKQGNDDQYWRRLCRARFNVTPDSFAPPPDPIKRLYQLQHGSFKAMCRGERRISTLRGCRHGFHT-APPSISRNTSAQLLGLMMMSN 1005
++ T P S AG+ G EKR H A R S RE+ D +DA G + + SH++K GRFS R R G+SIVL LP+A PGCRALVPYTASP AR + LPA PPLL LP S PS SSC +S G + G A R+DIPLEVFP+ FQYMDA TLC+VSSVSREW+KQGNDDQYWR LCRARFNV PD+FAPPPDPIKRLYQLQHGSFKAMCRG+RR HG H+ APP I R+TSAQLL ++ SN
Sbjct: 1 MATTKPS-STAGEGGGRGTGVEKRWHPASTRHSGPGTTPYRREAVD----DSDAGGEGSTKIFSHISKGGRFSDRGEREGTSIVL-LPEAG-PGCRALVPYTASP-ARS-RLPLPAHPPLLALPPSLGCDAPSLYSSCSLSSCNSSSSSPNGSFKGGAA--RRVDIPLEVFPIAFQYMDALTLCTVSSVSREWKKQGNDDQYWRHLCRARFNVIPDAFAPPPDPIKRLYQLQHGSFKAMCRGDRR--------HGLHSGAPPVIPRHTSAQLLVGLLASN 261 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.858.1 >prot_C-linearis_contig103.858.1 ID=prot_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp MTSPQCSPAGKEEDPGNTKEKRSHAAPRRSSRESFDAAVFVADAAGMPGSback to top mRNA from alignment at C-linearis_contig103:535452..540844- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.858.1 ID=mRNA_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5393bp|location=Sequence derived from alignment at C-linearis_contig103:535452..540844- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:535452..540844- >mRNA_C-linearis_contig103.858.1 ID=mRNA_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at C-linearis_contig103:535452..540844- (Chordaria linearis ClinC8C monoicous)back to top |