prot_C-linearis_contig10.562.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.562.1
Unique Nameprot_C-linearis_contig10.562.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length503
Homology
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BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Match: D7FQH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH0_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.240e-36
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 0 
Query:  167 VDQKDDDRYVRLLDVDSDAVWRAVLDACDRVGSYRVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPADFEGGF 256
            +DQ+DDDRYVR+LD+DSD +++AVLDACDRVGS+RVVGWCKRRWLMD+LFE  RDAAAA+DDIDHLRLAS+RS R IKTL+KPA F+GGF
Sbjct:   53 LDQRDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFDGGF 142
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BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 4.190e-36
Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 0 
Query:  168 DQKDDDRYVRLLDVDSDAVWRAVLDACDRVGSYRVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPADFEGGFARDDLSPTATAGTTAAA 273
            DQ+DDDRYVR+LD+DSD +++AVLDACDRVGS+RVVGWCKRRWLMD+LFE  RDAAAA+DDIDHLRLAS+RS R IKTL+KPA F GGF+ +    TA    + AA
Sbjct: 1086 DQRDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFNGGFSNNTSQATAAPPVSVAA 1191
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BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Match: A0A836CEP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.860e-6
Identity = 30/79 (37.97%), Postives = 49/79 (62.03%), Query Frame = 0 
Query:  175 YVRLLDVDSDAVWRAVLDACDRVGSYRVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPADFE 253
            Y+R+LD++     + ++  C R+GS+  +G  +++ +MDV FE PR+A  A++D+D L L S   GR   TL+K  D E
Sbjct: 1065 YLRVLDLE-----KRIMGVCKRIGSFNFIGRDRKKHVMDVRFESPREALVALEDVDALGLVSCIKGRPCNTLLKARDCE 1138
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQH0_ECTSI1.240e-3678.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1S2_9PHAE4.190e-3670.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CEP5_9STRA1.860e-637.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2413228..2416594 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.562.1mRNA_C-linearis_contig10.562.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 2413228..2416595 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.562.1 ID=prot_C-linearis_contig10.562.1|Name=mRNA_C-linearis_contig10.562.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=503bp
QRQQQPLGTGPTSAASVGDVSAAAAPSAAEGSEMANECRDSTGGGDRDGQ
GAVAAAAAAAATRAPAAQPEALYPQPAAGQSASGARGGGGGGRGGSVEEL
ELSVRQYHEYPYPESVGSGSGRGRHSPVGSDQGSSFSARSVGGREETAET
RAQMLDPRRVAMSRVPVDQKDDDRYVRLLDVDSDAVWRAVLDACDRVGSY
RVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPA
DFEGGFARDDLSPTATAGTTAAAAALPAAATGPAAGAGTTAATVGAPAPG
ILTPDLSSEQSVPAVATPVPRMWSPPPPRHVTASPLGGSGGGQEGGAAAV
AAAAAELAAQVATASQVPDNAFSSTVAVSSGSGSGGGGAAGFHQQRGFGP
VPAPQHQKPAVASWAGGAGGDGGAFGAVEGQRNPLLDAAAATAASSGAGA
RGDGAARPPVGVSQPYPPVDASAVAGWGIAGRASGGGGGGSGGFLTGLGS
LQQ
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