mRNA_C-linearis_contig10.562.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Match: D7FQH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH0_ECTSI) HSP 1 Score: 153 bits (386), Expect = 1.240e-36 Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 1 Query: 499 VDQKDDDRYVRLLDVDSDAVWRAVLDACDRVGSYRVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPADFEGGF 768
+DQ+DDDRYVR+LD+DSD +++AVLDACDRVGS+RVVGWCKRRWLMD+LFE RDAAAA+DDIDHLRLAS+RS R IKTL+KPA F+GGF
Sbjct: 53 LDQRDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFDGGF 142
BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE) HSP 1 Score: 154 bits (388), Expect = 4.190e-36 Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1 Query: 502 DQKDDDRYVRLLDVDSDAVWRAVLDACDRVGSYRVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPADFEGGFARDDLSPTATAGTTAAA 819
DQ+DDDRYVR+LD+DSD +++AVLDACDRVGS+RVVGWCKRRWLMD+LFE RDAAAA+DDIDHLRLAS+RS R IKTL+KPA F GGF+ + TA + AA
Sbjct: 1086 DQRDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFNGGFSNNTSQATAAPPVSVAA 1191
BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Match: A0A836CEP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP5_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.860e-6 Identity = 30/79 (37.97%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 523 YVRLLDVDSDAVWRAVLDACDRVGSYRVVGWCKRRWLMDVLFERPRDAAAAVDDIDHLRLASARSGRLIKTLIKPADFE 759
Y+R+LD++ + ++ C R+GS+ +G +++ +MDV FE PR+A A++D+D L L S GR TL+K D E
Sbjct: 1065 YLRVLDLE-----KRIMGVCKRIGSFNFIGRDRKKHVMDVRFESPREALVALEDVDALGLVSCIKGRPCNTLLKARDCE 1138 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.562.1 >prot_C-linearis_contig10.562.1 ID=prot_C-linearis_contig10.562.1|Name=mRNA_C-linearis_contig10.562.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=503bp QRQQQPLGTGPTSAASVGDVSAAAAPSAAEGSEMANECRDSTGGGDRDGQback to top mRNA from alignment at C-linearis_contig10:2413228..2416595+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.562.1 ID=mRNA_C-linearis_contig10.562.1|Name=mRNA_C-linearis_contig10.562.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3368bp|location=Sequence derived from alignment at C-linearis_contig10:2413228..2416595+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2413228..2416595+ >mRNA_C-linearis_contig10.562.1 ID=mRNA_C-linearis_contig10.562.1|Name=mRNA_C-linearis_contig10.562.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3018bp|location=Sequence derived from alignment at C-linearis_contig10:2413228..2416595+ (Chordaria linearis ClinC8C monoicous)back to top |