prot_C-linearis_contig10.561.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.561.1
Unique Nameprot_C-linearis_contig10.561.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length381
Homology
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BLAST of mRNA_C-linearis_contig10.561.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 345 bits (886), Expect = 1.070e-103
Identity = 189/353 (53.54%), Postives = 235/353 (66.57%), Query Frame = 0 
Query:   29 GGSPDRDESNEAWRGMRHSLDFWNWTLARLSGFQQPQSVTITVVDQYLGGLPLHCWAEVMGEAKLSSLAYEDKLSRKEFTRIVEAFLSRRNHAYSYHRKRSADQHGAVPEMPQGISLSLAATVDTPFLMVTELPADVTHAEMAVAFRPDAEVPDMIIFEEMQVPITGGSFKDSTEPQVMPQMAALLSYRSEQGARATRDMWDGGALRPNHPQRLTVRFSLGLNRG----CIWIGNFSSMYLSALQLIDFATKTWTPETILRPVFSDKPDFVESVHVTFSSCQAARNAIQHLRDSCP--RTIGAGGKCREVTPGIGFIGGMTCSVLFSPLLAPLAGRSYRVGELAGKVQAASAA 375
            GG        EAW  +++SLDFW W +ARL GF +PQ+ T+T VDQ+LGGLP+ CWAEVM  A LS    ED LS  EF RIVE  L  RN A+ +HR + A +H A  E   GISLSL ++  TPFLMVT+LPADVTHAEM  AFRPDA VPD ++FE++ +P+ GG    S    VMPQ AA+LS++SE+ AR  RDMWDGG LRP H   L       +  G    CIWIG FS   LSA++L+D+AT+TW P+T++RPVFS+ P  VESVH+TF SC +AR+AI+ LR + P  +   A         G+G+I G +CSVLFSPLL   AGRSYRVGEL   VQ A+AA
Sbjct:  522 GGGGGSFSPKEAWETLKNSLDFWEWIIARLMGFPRPQTSTVTSVDQFLGGLPVQCWAEVMERAGLSHRTKEDVLSPTEFQRIVETILCHRNAAFCHHRDK-AKRH-AGHENFLGISLSLISSTPTPFLMVTDLPADVTHAEMITAFRPDARVPDRVMFEDIDIPVRGGVLAGSKAKNVMPQTAAILSFQSEETARLMRDMWDGGVLRPQHVCVLGGMMLPAVGAGTFFSCIWIGAFSGKQLSAIELMDYATRTWPPDTLMRPVFSEAPSSVESVHLTFPSCLSARDAIEGLRGNQPGKQLPDAEASDGRADGGVGYIAGTSCSVLFSPLLTLPAGRSYRVGELG--VQRAAAA 870
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.561.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1S2_9PHAE1.070e-10353.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..381
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2407701..2412663 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.561.1mRNA_C-linearis_contig10.561.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 2407670..2412663 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.561.1 ID=prot_C-linearis_contig10.561.1|Name=mRNA_C-linearis_contig10.561.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=381bp
MAPAAVAGAGAGAEAFYALAANTAVHDSGGSPDRDESNEAWRGMRHSLDF
WNWTLARLSGFQQPQSVTITVVDQYLGGLPLHCWAEVMGEAKLSSLAYED
KLSRKEFTRIVEAFLSRRNHAYSYHRKRSADQHGAVPEMPQGISLSLAAT
VDTPFLMVTELPADVTHAEMAVAFRPDAEVPDMIIFEEMQVPITGGSFKD
STEPQVMPQMAALLSYRSEQGARATRDMWDGGALRPNHPQRLTVRFSLGL
NRGCIWIGNFSSMYLSALQLIDFATKTWTPETILRPVFSDKPDFVESVHV
TFSSCQAARNAIQHLRDSCPRTIGAGGKCREVTPGIGFIGGMTCSVLFSP
LLAPLAGRSYRVGELAGKVQAASAAGQASRE
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