mRNA_C-linearis_contig10.561.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.561.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE) HSP 1 Score: 345 bits (886), Expect = 1.520e-103 Identity = 189/353 (53.54%), Postives = 235/353 (66.57%), Query Frame = 2 Query: 116 GGSPDRDESNEAWRGMRHSLDFWNWTLARLSGFQQPQSVTITVVDQYLGGLPLHCWAEVMGEAKLSSLAYEDKLSRKEFTRIVEAFLSRRNHAYSYHRKRSADQHGAVPEMPQGISLSLAATVDTPFLMVTELPADVTHAEMAVAFRPDAEVPDMIIFEEMQVPITGGSFKDSTEPQVMPQMAALLSYRSEQGARATRDMWDGGALRPNHPQRLTVRFSLGLNRG----CIWIGNFSSMYLSALQLIDFATKTWTPETILRPVFSDKPDFVESVHVTFSSCQAARNAIQHLRDSCP--RTIGAGGKCREVTPGIGFIGGMTCSVLFSPLLAPLAGRSYRVGELAGKVQAASAA 1156
GG EAW +++SLDFW W +ARL GF +PQ+ T+T VDQ+LGGLP+ CWAEVM A LS ED LS EF RIVE L RN A+ +HR + A +H A E GISLSL ++ TPFLMVT+LPADVTHAEM AFRPDA VPD ++FE++ +P+ GG S VMPQ AA+LS++SE+ AR RDMWDGG LRP H L + G CIWIG FS LSA++L+D+AT+TW P+T++RPVFS+ P VESVH+TF SC +AR+AI+ LR + P + A G+G+I G +CSVLFSPLL AGRSYRVGEL VQ A+AA
Sbjct: 522 GGGGGSFSPKEAWETLKNSLDFWEWIIARLMGFPRPQTSTVTSVDQFLGGLPVQCWAEVMERAGLSHRTKEDVLSPTEFQRIVETILCHRNAAFCHHRDK-AKRH-AGHENFLGISLSLISSTPTPFLMVTDLPADVTHAEMITAFRPDARVPDRVMFEDIDIPVRGGVLAGSKAKNVMPQTAAILSFQSEETARLMRDMWDGGVLRPQHVCVLGGMMLPAVGAGTFFSCIWIGAFSGKQLSAIELMDYATRTWPPDTLMRPVFSEAPSSVESVHLTFPSCLSARDAIEGLRGNQPGKQLPDAEASDGRADGGVGYIAGTSCSVLFSPLLTLPAGRSYRVGELG--VQRAAAA 870 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.561.1 >prot_C-linearis_contig10.561.1 ID=prot_C-linearis_contig10.561.1|Name=mRNA_C-linearis_contig10.561.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=381bp MAPAAVAGAGAGAEAFYALAANTAVHDSGGSPDRDESNEAWRGMRHSLDFback to top mRNA from alignment at C-linearis_contig10:2407670..2412663+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.561.1 ID=mRNA_C-linearis_contig10.561.1|Name=mRNA_C-linearis_contig10.561.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4994bp|location=Sequence derived from alignment at C-linearis_contig10:2407670..2412663+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2407670..2412663+ >mRNA_C-linearis_contig10.561.1 ID=mRNA_C-linearis_contig10.561.1|Name=mRNA_C-linearis_contig10.561.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2286bp|location=Sequence derived from alignment at C-linearis_contig10:2407670..2412663+ (Chordaria linearis ClinC8C monoicous)back to top |