prot_C-linearis_contig10.561.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig10.561.1
Unique Name	prot_C-linearis_contig10.561.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	381

Homology

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BLAST of mRNA_C-linearis_contig10.561.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 345 bits (886), Expect = 1.070e-103
Identity = 189/353 (53.54%), Postives = 235/353 (66.57%), Query Frame = 0

Query:   29 GGSPDRDESNEAWRGMRHSLDFWNWTLARLSGFQQPQSVTITVVDQYLGGLPLHCWAEVMGEAKLSSLAYEDKLSRKEFTRIVEAFLSRRNHAYSYHRKRSADQHGAVPEMPQGISLSLAATVDTPFLMVTELPADVTHAEMAVAFRPDAEVPDMIIFEEMQVPITGGSFKDSTEPQVMPQMAALLSYRSEQGARATRDMWDGGALRPNHPQRLTVRFSLGLNRG----CIWIGNFSSMYLSALQLIDFATKTWTPETILRPVFSDKPDFVESVHVTFSSCQAARNAIQHLRDSCP--RTIGAGGKCREVTPGIGFIGGMTCSVLFSPLLAPLAGRSYRVGELAGKVQAASAA 375
            GG        EAW  +++SLDFW W +ARL GF +PQ+ T+T VDQ+LGGLP+ CWAEVM  A LS    ED LS  EF RIVE  L  RN A+ +HR + A +H A  E   GISLSL ++  TPFLMVT+LPADVTHAEM  AFRPDA VPD ++FE++ +P+ GG    S    VMPQ AA+LS++SE+ AR  RDMWDGG LRP H   L       +  G    CIWIG FS   LSA++L+D+AT+TW P+T++RPVFS+ P  VESVH+TF SC +AR+AI+ LR + P  +   A         G+G+I G +CSVLFSPLL   AGRSYRVGEL   VQ A+AA
Sbjct:  522 GGGGGSFSPKEAWETLKNSLDFWEWIIARLMGFPRPQTSTVTSVDQFLGGLPVQCWAEVMERAGLSHRTKEDVLSPTEFQRIVETILCHRNAAFCHHRDK-AKRH-AGHENFLGISLSLISSTPTPFLMVTDLPADVTHAEMITAFRPDARVPDRVMFEDIDIPVRGGVLAGSKAKNVMPQTAAILSFQSEETARLMRDMWDGGVLRPQHVCVLGGMMLPAVGAGTFFSCIWIGAFSGKQLSAIELMDYATRTWPPDTLMRPVFSEAPSSVESVHLTFPSCLSARDAIEGLRGNQPGKQLPDAEASDGRADGGVGYIAGTSCSVLFSPLLTLPAGRSYRVGELG--VQRAAAA 870

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig10.561.1 vs. uniprot

BLAST of mRNA_C-linearis_contig10.561.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5K1S2_9PHAE	1.070e-103	53.54	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..12
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..20
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 21..381
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig10	contig	C-linearis_contig10:2407701..2412663 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig10.561.1	mRNA_C-linearis_contig10.561.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig10 2407670..2412663 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig10.561.1 ID=prot_C-linearis_contig10.561.1|Name=mRNA_C-linearis_contig10.561.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=381bp
MAPAAVAGAGAGAEAFYALAANTAVHDSGGSPDRDESNEAWRGMRHSLDF
WNWTLARLSGFQQPQSVTITVVDQYLGGLPLHCWAEVMGEAKLSSLAYED
KLSRKEFTRIVEAFLSRRNHAYSYHRKRSADQHGAVPEMPQGISLSLAAT
VDTPFLMVTELPADVTHAEMAVAFRPDAEVPDMIIFEEMQVPITGGSFKD
STEPQVMPQMAALLSYRSEQGARATRDMWDGGALRPNHPQRLTVRFSLGL
NRGCIWIGNFSSMYLSALQLIDFATKTWTPETILRPVFSDKPDFVESVHV
TFSSCQAARNAIQHLRDSCPRTIGAGGKCREVTPGIGFIGGMTCSVLFSP
LLAPLAGRSYRVGELAGKVQAASAAGQASRE