prot_C-linearis_contig10.529.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.529.1
Unique Nameprot_C-linearis_contig10.529.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length633
Homology
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BLAST of mRNA_C-linearis_contig10.529.1 vs. uniprot
Match: D7FZW1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZW1_ECTSI)

HSP 1 Score: 738 bits (1904), Expect = 1.310e-259
Identity = 416/655 (63.51%), Postives = 488/655 (74.50%), Query Frame = 0 
Query:   12 KAQVLGLLHLQSTPRKAEVVTWGYDLKTPGGRRDNCATALLSLLLVIAAVTVSGLTSSMQLIYVQADLCDTRDSKLADNMNLMRNITNYDGARAASSQAVNITATAYYDAKDNY-----NILGLRFRWPSPYDLSEEERQNLETQARLGGDDCESVEECVGGVSGFLGDLFGQETCAEVEVPCPDIESTELLVEYDSSQKSLDLFGNNATDSNQEDINTTVAQKALDEATHAISELVRRINFASSIYVLYMAFLV--------------IRIFDCLANVNKPLWIAFIVIAWYTHELFQSIVNSSLYNVIWGNFLKDPCWADPDFLVNTSLVIRDTCTDIASAHNLFNQAAANYRYYDQVETTWLAVVPEESAGPFYGDPEVDFPQDFPGKCSATALLTAIQPGDGSVNWLSLFFHSGALVALLLQLVLAHWFLAWFSVLRPLTMHRGRVMIP--ESSQGDEVLYREVRSFARRRAILPFLFTTAVLLFLLINLGASSSDKDMPRKVLIGAFLLAFLQFGIVPLLVWRPVDERTMPKSKFVA-----------------SHRLGPGGDRGSGNGEVAGVTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVSRSPSPDNRT--RVSSSDSLSSVLQSALAATADAAAVGEGRR 626
            KA +LGLLHL+STPRKAEVV WGYD  T  G RD CAT +L++LLVI AVTVSGLTS++QLIYVQ DLC+TRDS L  NM LMRNITNY  ARA +S AVNITATAY+ A + Y     N LGL F WPSPYDL+EE+RQ LET+AR GGDDCE VEECVGGV+GF GD+ G+ TC E EVPCPDIESTELLVEYD+SQ++LDLFGNN T +  E+   T+AQ ALD+AT AIS LVRRINFASSIYVLY+ F V              +RIF+ L+NVNKP+WIA IV+ WY HELFQSI+NSSLYN+IW NFL+DPCWADP+FLVNTS+VI +TCT+I SA NLFNQA ANYRYY  VETTW  +    + GPFYGD +VDFPQ+FPG C+++ LL+AIQPGDG+VNW SLFF SGALVALLLQ+ LAHWF++WFSVLRPLTMH+GRVMIP  E++Q D VL+REVR+FARRRAILPF+F T +LLFLLINLG SSS + M RKVLIG+ +L  LQF +VPLLVWRP DER +P +                     S+     G   SGN +  G +              XXXXXXXXXXXXXXXX   SR+P    +   R  S DSLSS+L +A+AAT+ AAAVGEGR+
Sbjct:   20 KAALLGLLHLKSTPRKAEVVKWGYDCSTGSGMRDYCATGVLAVLLVITAVTVSGLTSAVQLIYVQPDLCETRDSSLVANMELMRNITNYYNARATASLAVNITATAYFKAAETYTGEGLNALGLAFEWPSPYDLNEEQRQELETEAREGGDDCEPVEECVGGVAGFFGDIVGETTCVETEVPCPDIESTELLVEYDASQQALDLFGNNIT-AYDEEYAETLAQSALDDATSAISVLVRRINFASSIYVLYLVFTVLVPPPFIVYGAKWNVRIFEVLSNVNKPMWIALIVLVWYGHELFQSIINSSLYNIIWSNFLQDPCWADPEFLVNTSMVISETCTEIISASNLFNQAGANYRYYGAVETTWQPISEGRTDGPFYGDADVDFPQEFPGNCTSSVLLSAIQPGDGNVNWWSLFFRSGALVALLLQITLAHWFISWFSVLRPLTMHKGRVMIPNPETNQSDPVLFREVRAFARRRAILPFVFMTLLLLFLLINLGVSSSAEGMGRKVLIGSAILFALQFVVVPLLVWRPSDERWLPAAAMPPDNDGSLREDYTDAGESDSYDDKEEGGWDSGNDKEPGSSLPRNRHSHRDDDYPXXXXXXXXXXXXXXXXXXRSRTPQRQEQKLERSDSGDSLSSILAAAMAATSAAAAVGEGRQ 673
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.529.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZW1_ECTSI1.310e-25963.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 518..632
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 246..265
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..245
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 405..431
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..75
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 466..486
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 432..465
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 266..404
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 487..497
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 498..517
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..51
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..28
NoneNo IPR availableTMHMMTMhelixcoord: 51..73
NoneNo IPR availableTMHMMTMhelixcoord: 410..432
NoneNo IPR availableTMHMMTMhelixcoord: 466..488
NoneNo IPR availableTMHMMTMhelixcoord: 498..520

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1858444..1866806 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.529.1mRNA_C-linearis_contig10.529.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 1857145..1867020 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.529.1 ID=prot_C-linearis_contig10.529.1|Name=mRNA_C-linearis_contig10.529.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=633bp
MSYKPSAEDMRKAQVLGLLHLQSTPRKAEVVTWGYDLKTPGGRRDNCATA
LLSLLLVIAAVTVSGLTSSMQLIYVQADLCDTRDSKLADNMNLMRNITNY
DGARAASSQAVNITATAYYDAKDNYNILGLRFRWPSPYDLSEEERQNLET
QARLGGDDCESVEECVGGVSGFLGDLFGQETCAEVEVPCPDIESTELLVE
YDSSQKSLDLFGNNATDSNQEDINTTVAQKALDEATHAISELVRRINFAS
SIYVLYMAFLVIRIFDCLANVNKPLWIAFIVIAWYTHELFQSIVNSSLYN
VIWGNFLKDPCWADPDFLVNTSLVIRDTCTDIASAHNLFNQAAANYRYYD
QVETTWLAVVPEESAGPFYGDPEVDFPQDFPGKCSATALLTAIQPGDGSV
NWLSLFFHSGALVALLLQLVLAHWFLAWFSVLRPLTMHRGRVMIPESSQG
DEVLYREVRSFARRRAILPFLFTTAVLLFLLINLGASSSDKDMPRKVLIG
AFLLAFLQFGIVPLLVWRPVDERTMPKSKFVASHRLGPGGDRGSGNGEVA
GVTGAAGAGAAAQQQGREERPEWEDEEEWEDSEEGVSRSPSPDNRTRVSS
SDSLSSVLQSALAATADAAAVGEGRRQSYRFS*
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