mRNA_C-linearis_contig10.529.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.529.1 vs. uniprot
Match: D7FZW1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZW1_ECTSI) HSP 1 Score: 737 bits (1902), Expect = 7.640e-252 Identity = 416/655 (63.51%), Postives = 488/655 (74.50%), Query Frame = 2 Query: 248 KAQVLGLLHLQSTPRKAEVVTWGYDLKTPGGRRDNCATALLSLLLVIAAVTVSGLTSSMQLIYVQADLCDTRDSKLADNMNLMRNITNYDGARAASSQAVNITATAYYDAKDNY-----NILGLRFRWPSPYDLSEEERQNLETQARLGGDDCESVEECVGGVSGFLGDLFGQETCAEVEVPCPDIESTELLVEYDSSQKSLDLFGNNATDSNQEDINTTVAQKALDEATHAISELVRRINFASSIYVLYMAFLV--------------IRIFDCLANVNKPLWIAFIVIAWYTHELFQSIVNSSLYNVIWGNFLKDPCWADPDFLVNTSLVIRDTCTDIASAHNLFNQAAANYRYYDQVETTWLAVVPEESAGPFYGDPEVDFPQDFPGKCSATALLTAIQPGDGSVNWLSLFFHSGALVALLLQLVLAHWFLAWFSVLRPLTMHRGRVMIP--ESSQGDEVLYREVRSFARRRAILPFLFTTAVLLFLLINLGASSSDKDMPRKVLIGAFLLAFLQFGIVPLLVWRPVDERTMPKSKFVA-----------------SHRLGPGGDRGSGNGEVAGVTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVSRSPSPDNRT--RVSSSDSLSSVLQSALAATADAAAVGEGRR 2092
KA +LGLLHL+STPRKAEVV WGYD T G RD CAT +L++LLVI AVTVSGLTS++QLIYVQ DLC+TRDS L NM LMRNITNY ARA +S AVNITATAY+ A + Y N LGL F WPSPYDL+EE+RQ LET+AR GGDDCE VEECVGGV+GF GD+ G+ TC E EVPCPDIESTELLVEYD+SQ++LDLFGNN T + E+ T+AQ ALD+AT AIS LVRRINFASSIYVLY+ F V +RIF+ L+NVNKP+WIA IV+ WY HELFQSI+NSSLYN+IW NFL+DPCWADP+FLVNTS+VI +TCT+I SA NLFNQA ANYRYY VETTW + + GPFYGD +VDFPQ+FPG C+++ LL+AIQPGDG+VNW SLFF SGALVALLLQ+ LAHWF++WFSVLRPLTMH+GRVMIP E++Q D VL+REVR+FARRRAILPF+F T +LLFLLINLG SSS + M RKVLIG+ +L LQF +VPLLVWRP DER +P + S+ G SGN + G + XXXXXXXXXXXXXXXX SR+P + R S DSLSS+L +A+AAT+ AAAVGEGR+
Sbjct: 20 KAALLGLLHLKSTPRKAEVVKWGYDCSTGSGMRDYCATGVLAVLLVITAVTVSGLTSAVQLIYVQPDLCETRDSSLVANMELMRNITNYYNARATASLAVNITATAYFKAAETYTGEGLNALGLAFEWPSPYDLNEEQRQELETEAREGGDDCEPVEECVGGVAGFFGDIVGETTCVETEVPCPDIESTELLVEYDASQQALDLFGNNIT-AYDEEYAETLAQSALDDATSAISVLVRRINFASSIYVLYLVFTVLVPPPFIVYGAKWNVRIFEVLSNVNKPMWIALIVLVWYGHELFQSIINSSLYNIIWSNFLQDPCWADPEFLVNTSMVISETCTEIISASNLFNQAGANYRYYGAVETTWQPISEGRTDGPFYGDADVDFPQEFPGNCTSSVLLSAIQPGDGNVNWWSLFFRSGALVALLLQITLAHWFISWFSVLRPLTMHKGRVMIPNPETNQSDPVLFREVRAFARRRAILPFVFMTLLLLFLLINLGVSSSAEGMGRKVLIGSAILFALQFVVVPLLVWRPSDERWLPAAAMPPDNDGSLREDYTDAGESDSYDDKEEGGWDSGNDKEPGSSLPRNRHSHRDDDYPXXXXXXXXXXXXXXXXXXRSRTPQRQEQKLERSDSGDSLSSILAAAMAATSAAAAVGEGRQ 673 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.529.1 >prot_C-linearis_contig10.529.1 ID=prot_C-linearis_contig10.529.1|Name=mRNA_C-linearis_contig10.529.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=633bp MSYKPSAEDMRKAQVLGLLHLQSTPRKAEVVTWGYDLKTPGGRRDNCATAback to top mRNA from alignment at C-linearis_contig10:1857145..1867020- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.529.1 ID=mRNA_C-linearis_contig10.529.1|Name=mRNA_C-linearis_contig10.529.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9876bp|location=Sequence derived from alignment at C-linearis_contig10:1857145..1867020- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1857145..1867020- >mRNA_C-linearis_contig10.529.1 ID=mRNA_C-linearis_contig10.529.1|Name=mRNA_C-linearis_contig10.529.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3798bp|location=Sequence derived from alignment at C-linearis_contig10:1857145..1867020- (Chordaria linearis ClinC8C monoicous)back to top |