prot_C-linearis_contig10.518.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig10.518.1
Unique Name	prot_C-linearis_contig10.518.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	298

Homology

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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: D7FZW6_ECTSI (Complex I intermediate-associated protein 30, mitochondrial (NADH dehydrogenase [ubiquinon) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW6_ECTSI)

HSP 1 Score: 456 bits (1174), Expect = 3.350e-160
Identity = 224/300 (74.67%), Postives = 250/300 (83.33%), Query Frame = 0

Query:    1 MARIVRTYRKYWPTDAILKGKVVLEDLMLCSFSSKELTEGWAVTTDQRWGGKSTATVSWKPWERLTGADPTASATRGGDPSSDAGAG---ALDAQPWELYEGSPDTAAPRGVLQSEGMSTGDEEEAGPPLDKGGFLCFSGELSTEKAARARVGGFCGTRSTRREQPLVLPDGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVEDGXXXXXXXXXXXXXXPSPPENGVMSW 297
            MAR+ RTYRKYWPTDA+LKG  VLEDLMLCSFS+K+L  GW VTTDQ WGGKSTATVSWKPWERL G D +ASAT     ++DA AG   ALD QPW L+EG+P TAAPRGVLQSEG+  GDEE   PPL+KGGF CFSGELSTE+AARA+VGGFCGTRSTRR++PLVLPDGY+G+EMRIRTDGRQYEVNFEP SGI+NDLYQGYVRTP GQW+TV+LPLNRLLLTGQGQIRD+QRKWD GMEL+S+GFTIADGV GPFRLDVAWV+LV EV+D               P PP +GVMSW
Sbjct:    1 MARVARTYRKYWPTDAVLKGTAVLEDLMLCSFSTKDLLAGWDVTTDQSWGGKSTATVSWKPWERLGGTDGSASAT-----AADAAAGGACALDVQPWRLFEGTPATAAPRGVLQSEGLPAGDEENTAPPLEKGGFFCFSGELSTERAARAKVGGFCGTRSTRRQEPLVLPDGYRGVEMRIRTDGRQYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDVGMELKSIGFTIADGVGGPFRLDVAWVALVSEVDD---EGKDDGDAPRKKPLPPTDGVMSW 292

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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A6H5KSW2_9PHAE (CIA30 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW2_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 2.300e-51
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 0

Query:  183 QYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVEDGXXXXXXXXXXXXXXPSPPENGVMSW 297
            +YEVNFEP SGI+NDLYQGYVRTP GQW+TV+LPLNRLLLTGQGQIRD+QRKWD GMEL S+GFTIADGV GPFRLDVAWV+LV EV++G              P PP++GVMSW
Sbjct:   29 RYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDMGMELNSIGFTIADGVGGPFRLDVAWVALVSEVDEGKDDGDAPRKK----PLPPKDGVMSW 139

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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: W7U321_9STRA (NADH:ubiquinone oxidoreductase intermediate-associated protein 30 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U321_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.540e-20
Identity = 55/141 (39.01%), Postives = 80/141 (56.74%), Query Frame = 0

Query:  135 FSGELSTEKAAR---ARVGGFCGTRSTRREQPLVLP-DGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVR-TPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVE 270
            FSG LS  + A     +  G+C  +    E P     +GY+G+E+ +RTDGR Y  N E  S   ++LYQGY+   P GQW T+ LP   + LT  G++  +Q++ D    L S+GF IADG  GPF L++A V+ V  ++
Sbjct:   87 FSGNLSNMRPAADPTVKRTGYCALKV---EMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQ 224

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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A1V9YVR5_9STRA (Queuine tRNA-ribosyltransferase catalytic subunit 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVR5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.320e-13
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 0

Query:  131 GFLCFSGELSTEKAARARV---GGFCGTRSTRREQPLVLPDGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVE 270
            G   FSG LS       +     G+C  R     Q L L  GYKG+ MRI+TDGR Y +N +  S   +DLY G+++ P  +W    L  +  +LT +G ++           LR++G  +AD   GPF + + W+  +  V+
Sbjct:  498 GAAVFSGNLSLSIQPTEQYVVRSGYCAIRGNV-PQNLHL-HGYKGLAMRIKTDGRTYRINAQADSWNPHDLYMGFLKAPANEWVEAELAFSDFILTSRGYVQMNDPTKLNPASLRTIGIALADDNEGPFSMAIEWIKAIENVD 638

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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A5A8C5V0_CAFRO (CIA30 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5V0_CAFRO)

HSP 1 Score: 77.0 bits (188), Expect = 9.220e-13
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 0

Query:  135 FSGELSTEKAARARVGGFCGTRSTRREQPLVLPD----GYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVED 271
            F G +      R   GGFC  R  R  +P+   D      +G+++R++TDGR + +NF+       D++Q  VRT P +W T+ LP +      +G +R+VQ   +   ++   G T+ADG  GPFR +V  V  + E  D
Sbjct:   63 FEGVVDWTSEDRESRGGFCNVR-LRERKPVREDDEEMMATEGVQLRVKTDGRPFLLNFQCRDTTDEDVWQAEVRTAPFRWETLALPWSGFAHVSRGLVREVQMNLEPH-KIDGFGLTVADGRNGPFRCEVQHVVALGEWRD 201

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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A5A8E3B7_CAFRO (CIA30 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3B7_CAFRO)

HSP 1 Score: 77.0 bits (188), Expect = 2.310e-12
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 0

Query:  135 FSGELSTEKAARARVGGFCGTRSTRREQPLVLPD----GYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVED 271
            F G +      R   GGFC  R  R  +P+   D      +G+++R++TDGR + +NF+       D++Q  VRT P +W T+ LP +      +G +R+VQ   +   ++   G T+ADG  GPFR +V  V  + E  D
Sbjct:   92 FEGVVDWTSEDRESRGGFCNVR-LRERKPVREDDEEMMATEGVQLRVKTDGRPFLLNFQCRDTTDEDVWQAEVRTAPFRWETLALPWSGFAHVSRGLVREVQMNLEPH-KIDGFGLTVADGRNGPFRCEVQHVVALGEWRD 230

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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: L7MD23_RHIPC (CIA30 domain-containing protein (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MD23_RHIPC)

HSP 1 Score: 74.3 bits (181), Expect = 1.770e-11
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 0

Query:  135 FSGELSTE--KAARARVGGFCGTRSTRREQPLVLPDGYKG-----MEMRIRTDGRQYEVNF--EPYSGIL-NDLYQGYVRTPPGQ-WSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVS 264
            FSG L T   K  +    G+C  RS R  +P  +P  Y       +E+RIR DGR Y +N   + Y  +  N LYQ  + T  G  W    +P ++ L+  +G+++D Q   D    ++ +G T+ADG+ GPFRL+V ++ 
Sbjct:  171 FSGYLDTTVPKDGKMVETGYCNMRSPRARRPFNMPAAYDWSSFTHLELRIRGDGRSYLINLGADQYFDVTWNVLYQFPLYTRGGPYWQVARIPFSKFLVGNKGRVQDKQGAIDL-TNVKHMGITLADGIAGPFRLEVDYIG 310

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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: L7MEY0_RHIPC (CIA30 domain-containing protein (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MEY0_RHIPC)

HSP 1 Score: 74.3 bits (181), Expect = 2.140e-11
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 0

Query:  135 FSGELSTE--KAARARVGGFCGTRSTRREQPLVLPDGYKG-----MEMRIRTDGRQYEVNF--EPYSGIL-NDLYQGYVRTPPGQ-WSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVS 264
            FSG L T   K  +    G+C  RS R  +P  +P  Y       +E+RIR DGR Y +N   + Y  +  N LYQ  + T  G  W    +P ++ L+  +G+++D Q   D    ++ +G T+ADG+ GPFRL+V ++ 
Sbjct:  202 FSGYLDTTVPKDGKMVETGYCNMRSPRARRPFNMPAAYDWSSFTHLELRIRGDGRSYLINLGADQYFDVTWNVLYQFPLYTRGGPYWQVARIPFSKFLVGNKGRVQDKQGAIDL-TNVKHMGITLADGIAGPFRLEVDYIG 341

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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A6M2CVE3_RHIMP (Putative complex i intermediate-associated protein 30 mitochondrial ovary overexpressed n=2 Tax=Rhipicephalus TaxID=34630 RepID=A0A6M2CVE3_RHIMP)

HSP 1 Score: 73.2 bits (178), Expect = 3.100e-11
Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 0

Query:  135 FSGELSTEKAARARV--GGFCGTRSTRREQPLVLPDGYKG-----MEMRIRTDGRQYEVNF--EPYSGIL-NDLYQGYVRTPPGQ-WSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVS 264
            FSG L T      +V   G+C  RS R  +P  +P  Y       +E+R+R DGR Y +N   + Y  +  N LY   + T  G  W    +P ++ L+  +G+I+D Q   D    ++ +G T+ADG+ GPFRL+V ++ 
Sbjct:  127 FSGYLDTTVPKDGKVVETGYCNVRSPRARRPFNMPAAYDWTPFTHLELRVRGDGRSYMINLGADHYFDVTWNVLYHFPLYTRGGPYWQVTRIPFSKFLVGNKGRIQDKQGAIDLS-NVKHMGITLADGISGPFRLEVDYIG 266

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BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A0D2UCD6_CAPO3 (CIA30 domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UCD6_CAPO3)

HSP 1 Score: 71.6 bits (174), Expect = 6.590e-11
Identity = 46/140 (32.86%), Postives = 75/140 (53.57%), Query Frame = 0

Query:  135 FSGELSTEKAARARV--GGFCGTRSTRREQPLVLP-----DGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPG-QWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLV 266
            F G LS  K   +++   GF   RS R  +  + P     + +  +E+ +R DGR Y  N    S   +D+YQ +V T  G +W  + LP  R LLT  G +++ Q  ++K   +R+ GF++ADGV GPF L++  + ++
Sbjct:   75 FDGVLSQAKPQGSKLVRSGFAAIRSKRYPRTPLAPYTMNLEAFDTVELILRGDGRTYISNLSTDSVQEHDVYQSFVYTRGGPEWERILLPFARYLLTYHGYVQEDQPVFNK-RAIRTFGFSLADGVEGPFALEIKSIRVL 213

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot

BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FZW6_ECTSI	3.350e-160	74.67	Complex I intermediate-associated protein 30, mito...	[more]
A0A6H5KSW2_9PHAE	2.300e-51	72.17	CIA30 domain-containing protein n=1 Tax=Ectocarpus...	[more]
W7U321_9STRA	3.540e-20	39.01	NADH:ubiquinone oxidoreductase intermediate-associ...	[more]
A0A1V9YVR5_9STRA	4.320e-13	32.17	Queuine tRNA-ribosyltransferase catalytic subunit ...	[more]
A0A5A8C5V0_CAFRO	9.220e-13	32.62	CIA30 domain-containing protein n=2 Tax=Cafeteria ...	[more]
A0A5A8E3B7_CAFRO	2.310e-12	32.62	CIA30 domain-containing protein n=2 Tax=Cafeteria ...	[more]
L7MD23_RHIPC	1.770e-11	34.04	CIA30 domain-containing protein (Fragment) n=1 Tax...	[more]
L7MEY0_RHIPC	2.140e-11	34.04	CIA30 domain-containing protein (Fragment) n=1 Tax...	[more]
A0A6M2CVE3_RHIMP	3.100e-11	33.33	Putative complex i intermediate-associated protein...	[more]
A0A0D2UCD6_CAPO3	6.590e-11	32.86	CIA30 domain-containing protein n=1 Tax=Capsaspora...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013857	NADH:ubiquinone oxidoreductase intermediate-associated protein 30	PFAM	PF08547	CIA30	coord: 129..260 e-value: 1.1E-21 score: 77.6
IPR039131	Complex I intermediate-associated protein 30, mitochondrial	PANTHER	PTHR13194	COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30	coord: 16..267
IPR008979	Galactose-binding-like domain superfamily	SUPERFAMILY	49785	Galactose-binding domain-like	coord: 128..263

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig10	contig	C-linearis_contig10:1695690..1699254 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig10.518.1	mRNA_C-linearis_contig10.518.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig10 1695634..1699816 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig10.518.1 ID=prot_C-linearis_contig10.518.1|Name=mRNA_C-linearis_contig10.518.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=298bp
MARIVRTYRKYWPTDAILKGKVVLEDLMLCSFSSKELTEGWAVTTDQRWG
GKSTATVSWKPWERLTGADPTASATRGGDPSSDAGAGALDAQPWELYEGS
PDTAAPRGVLQSEGMSTGDEEEAGPPLDKGGFLCFSGELSTEKAARARVG
GFCGTRSTRREQPLVLPDGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQ
GYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIAD
GVIGPFRLDVAWVSLVPEVEDGDGTGNGSGDAKRKKPSPPENGVMSW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013857	NADH-UbQ_OxRdtase-assoc_prot30
IPR039131	NDUFAF1
IPR008979	Galactose-bd-like_sf