mRNA_C-linearis_contig10.518.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: D7FZW6_ECTSI (Complex I intermediate-associated protein 30, mitochondrial (NADH dehydrogenase [ubiquinon) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW6_ECTSI) HSP 1 Score: 455 bits (1170), Expect = 2.820e-156 Identity = 224/300 (74.67%), Postives = 250/300 (83.33%), Query Frame = 3 Query: 57 MARIVRTYRKYWPTDAILKGKVVLEDLMLCSFSSKELTEGWAVTTDQRWGGKSTATVSWKPWERLTGADPTASATRGGDPSSDAGAG---ALDAQPWELYEGSPDTAAPRGVLQSEGMSTGDEEEAGPPLDKGGFLCFSGELSTEKAARARVGGFCGTRSTRREQPLVLPDGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVEDGXXXXXXXXXXXXXXPSPPENGVMSW 947
MAR+ RTYRKYWPTDA+LKG VLEDLMLCSFS+K+L GW VTTDQ WGGKSTATVSWKPWERL G D +ASAT ++DA AG ALD QPW L+EG+P TAAPRGVLQSEG+ GDEE PPL+KGGF CFSGELSTE+AARA+VGGFCGTRSTRR++PLVLPDGY+G+EMRIRTDGRQYEVNFEP SGI+NDLYQGYVRTP GQW+TV+LPLNRLLLTGQGQIRD+QRKWD GMEL+S+GFTIADGV GPFRLDVAWV+LV EV+D P PP +GVMSW
Sbjct: 1 MARVARTYRKYWPTDAVLKGTAVLEDLMLCSFSTKDLLAGWDVTTDQSWGGKSTATVSWKPWERLGGTDGSASAT-----AADAAAGGACALDVQPWRLFEGTPATAAPRGVLQSEGLPAGDEENTAPPLEKGGFFCFSGELSTERAARAKVGGFCGTRSTRRQEPLVLPDGYRGVEMRIRTDGRQYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDVGMELKSIGFTIADGVGGPFRLDVAWVALVSEVDD---EGKDDGDAPRKKPLPPTDGVMSW 292
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A6H5KSW2_9PHAE (CIA30 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW2_9PHAE) HSP 1 Score: 174 bits (440), Expect = 7.930e-49 Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 3 Query: 603 QYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVEDGXXXXXXXXXXXXXXPSPPENGVMSW 947
+YEVNFEP SGI+NDLYQGYVRTP GQW+TV+LPLNRLLLTGQGQIRD+QRKWD GMEL S+GFTIADGV GPFRLDVAWV+LV EV++G P PP++GVMSW
Sbjct: 29 RYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDMGMELNSIGFTIADGVGGPFRLDVAWVALVSEVDEGKDDGDAPRKK----PLPPKDGVMSW 139
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: W7U321_9STRA (NADH:ubiquinone oxidoreductase intermediate-associated protein 30 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U321_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 3.980e-19 Identity = 55/141 (39.01%), Postives = 80/141 (56.74%), Query Frame = 3 Query: 459 FSGELSTEKAAR---ARVGGFCGTRSTRREQPLVLP-DGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVR-TPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVE 866
FSG LS + A + G+C + E P +GY+G+E+ +RTDGR Y N E S ++LYQGY+ P GQW T+ LP + LT G++ +Q++ D L S+GF IADG GPF L++A V+ V ++
Sbjct: 87 FSGNLSNMRPAADPTVKRTGYCALKV---EMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQ 224
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A1V9YVR5_9STRA (Queuine tRNA-ribosyltransferase catalytic subunit 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVR5_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 8.550e-13 Identity = 62/245 (25.31%), Postives = 98/245 (40.00%), Query Frame = 3 Query: 141 LCSFSSKELTEGWAVTTDQRWGGKSTATVSWKPWERLTGADPTASATRGGDPSSDAGAGALDAQPWELYEGSPDTAAPRGVLQSEGMSTGDEEEAGPPLDKGGFLCFSGELSTEKAARARV---GGFCGTRSTRREQPLVLPDGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVE 866
L F+S + T+ W V++DQ GG ST + + P E + D+++A + G FSG LS + G+C R Q L L GYKG+ MRI+TDGR Y +N + S +DLY G+++ P +W L + +LT +G ++ LR++G +AD GPF + + W+ + V+
Sbjct: 452 LFQFASAQATQEWLVSSDQAIGGSSTCSFEFVPHEEMK----------------------------------------------------DDKDA----PQAGAAVFSGNLSLSIQPTEQYVVRSGYCAIRGNV-PQNLHL-HGYKGLAMRIKTDGRTYRINAQADSWNPHDLYMGFLKAPANEWVEAELAFSDFILTSRGYVQMNDPTKLNPASLRTIGIALADDNEGPFSMAIEWIKAIENVD 638
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A5A8C5V0_CAFRO (CIA30 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5V0_CAFRO) HSP 1 Score: 77.0 bits (188), Expect = 4.070e-12 Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 3 Query: 459 FSGELSTEKAARARVGGFCGTRSTRREQPLVLPD----GYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVED 869
F G + R GGFC R R +P+ D +G+++R++TDGR + +NF+ D++Q VRT P +W T+ LP + +G +R+VQ + ++ G T+ADG GPFR +V V + E D
Sbjct: 63 FEGVVDWTSEDRESRGGFCNVR-LRERKPVREDDEEMMATEGVQLRVKTDGRPFLLNFQCRDTTDEDVWQAEVRTAPFRWETLALPWSGFAHVSRGLVREVQMNLEPH-KIDGFGLTVADGRNGPFRCEVQHVVALGEWRD 201
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A5A8E3B7_CAFRO (CIA30 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3B7_CAFRO) HSP 1 Score: 77.0 bits (188), Expect = 1.160e-11 Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 3 Query: 459 FSGELSTEKAARARVGGFCGTRSTRREQPLVLPD----GYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPGQWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLVPEVED 869
F G + R GGFC R R +P+ D +G+++R++TDGR + +NF+ D++Q VRT P +W T+ LP + +G +R+VQ + ++ G T+ADG GPFR +V V + E D
Sbjct: 92 FEGVVDWTSEDRESRGGFCNVR-LRERKPVREDDEEMMATEGVQLRVKTDGRPFLLNFQCRDTTDEDVWQAEVRTAPFRWETLALPWSGFAHVSRGLVREVQMNLEPH-KIDGFGLTVADGRNGPFRCEVQHVVALGEWRD 230
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: L7MD23_RHIPC (CIA30 domain-containing protein (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MD23_RHIPC) HSP 1 Score: 74.3 bits (181), Expect = 7.910e-11 Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 3 Query: 459 FSGELSTE--KAARARVGGFCGTRSTRREQPLVLPDGYKG-----MEMRIRTDGRQYEVNF--EPYSGIL-NDLYQGYVRTPPGQ-WSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVS 848
FSG L T K + G+C RS R +P +P Y +E+RIR DGR Y +N + Y + N LYQ + T G W +P ++ L+ +G+++D Q D ++ +G T+ADG+ GPFRL+V ++
Sbjct: 171 FSGYLDTTVPKDGKMVETGYCNMRSPRARRPFNMPAAYDWSSFTHLELRIRGDGRSYLINLGADQYFDVTWNVLYQFPLYTRGGPYWQVARIPFSKFLVGNKGRVQDKQGAIDL-TNVKHMGITLADGIAGPFRLEVDYIG 310
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: L7MEY0_RHIPC (CIA30 domain-containing protein (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MEY0_RHIPC) HSP 1 Score: 74.3 bits (181), Expect = 1.010e-10 Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 3 Query: 459 FSGELSTE--KAARARVGGFCGTRSTRREQPLVLPDGYKG-----MEMRIRTDGRQYEVNF--EPYSGIL-NDLYQGYVRTPPGQ-WSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVS 848
FSG L T K + G+C RS R +P +P Y +E+RIR DGR Y +N + Y + N LYQ + T G W +P ++ L+ +G+++D Q D ++ +G T+ADG+ GPFRL+V ++
Sbjct: 202 FSGYLDTTVPKDGKMVETGYCNMRSPRARRPFNMPAAYDWSSFTHLELRIRGDGRSYLINLGADQYFDVTWNVLYQFPLYTRGGPYWQVARIPFSKFLVGNKGRVQDKQGAIDL-TNVKHMGITLADGIAGPFRLEVDYIG 341
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A6M2CVE3_RHIMP (Putative complex i intermediate-associated protein 30 mitochondrial ovary overexpressed n=2 Tax=Rhipicephalus TaxID=34630 RepID=A0A6M2CVE3_RHIMP) HSP 1 Score: 73.2 bits (178), Expect = 1.250e-10 Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 3 Query: 459 FSGELSTEKAARARV--GGFCGTRSTRREQPLVLPDGYKG-----MEMRIRTDGRQYEVNF--EPYSGIL-NDLYQGYVRTPPGQ-WSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVS 848
FSG L T +V G+C RS R +P +P Y +E+R+R DGR Y +N + Y + N LY + T G W +P ++ L+ +G+I+D Q D ++ +G T+ADG+ GPFRL+V ++
Sbjct: 127 FSGYLDTTVPKDGKVVETGYCNVRSPRARRPFNMPAAYDWTPFTHLELRVRGDGRSYMINLGADHYFDVTWNVLYHFPLYTRGGPYWQVTRIPFSKFLVGNKGRIQDKQGAIDLS-NVKHMGITLADGISGPFRLEVDYIG 266
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Match: A0A0D2UCD6_CAPO3 (CIA30 domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UCD6_CAPO3) HSP 1 Score: 71.6 bits (174), Expect = 2.360e-10 Identity = 46/140 (32.86%), Postives = 75/140 (53.57%), Query Frame = 3 Query: 459 FSGELSTEKAARARV--GGFCGTRSTRREQPLVLP-----DGYKGMEMRIRTDGRQYEVNFEPYSGILNDLYQGYVRTPPG-QWSTVTLPLNRLLLTGQGQIRDVQRKWDKGMELRSVGFTIADGVIGPFRLDVAWVSLV 854
F G LS K +++ GF RS R + + P + + +E+ +R DGR Y N S +D+YQ +V T G +W + LP R LLT G +++ Q ++K +R+ GF++ADGV GPF L++ + ++
Sbjct: 75 FDGVLSQAKPQGSKLVRSGFAAIRSKRYPRTPLAPYTMNLEAFDTVELILRGDGRTYISNLSTDSVQEHDVYQSFVYTRGGPEWERILLPFARYLLTYHGYVQEDQPVFNK-RAIRTFGFSLADGVEGPFALEIKSIRVL 213 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.518.1 >prot_C-linearis_contig10.518.1 ID=prot_C-linearis_contig10.518.1|Name=mRNA_C-linearis_contig10.518.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=298bp MARIVRTYRKYWPTDAILKGKVVLEDLMLCSFSSKELTEGWAVTTDQRWGback to top mRNA from alignment at C-linearis_contig10:1695634..1699816+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.518.1 ID=mRNA_C-linearis_contig10.518.1|Name=mRNA_C-linearis_contig10.518.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4183bp|location=Sequence derived from alignment at C-linearis_contig10:1695634..1699816+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1695634..1699816+ >mRNA_C-linearis_contig10.518.1 ID=mRNA_C-linearis_contig10.518.1|Name=mRNA_C-linearis_contig10.518.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at C-linearis_contig10:1695634..1699816+ (Chordaria linearis ClinC8C monoicous)back to top |