prot_C-linearis_contig10.479.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig10.479.1
Unique Name	prot_C-linearis_contig10.479.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	1029

Homology

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BLAST of mRNA_C-linearis_contig10.479.1 vs. uniprot
Match: A0A6H5KLX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX8_9PHAE)

HSP 1 Score: 664 bits (1713), Expect = 7.430e-218
Identity = 368/704 (52.27%), Postives = 462/704 (65.62%), Query Frame = 0

Query:    8 AALLLSFSLPAPCLGVLRDLGLTADFVDSEHVAQGGSCANGCVRTVVDAVVISIGEVDCDFGGLRVENLLDHTEEDVMGGALNVVHYCSNAEGELMYQGQGACQYSVCVNAEWKEGLMTYSVVVTH-EAAAEHTVHVQVYMNEYEDLEHVPNLSVGSSAASGEGQAQAQCRLGDTCEPATACPTGTSEVKVVAKDAYGDGWTGALPGRANTWTVTESLSPDDLASPVANGTLPDHHYSGVTTLCLEDGLYAFKATADAAWSSEATWSACGVEGGAGGSMELDLSGGTCNVVEDSGAGGPPDSDAETSSGDLCSQPSESPCVGLDVAVREVSGPSVGMYYDESCLEGGGGRTGCGGGGVPGCRVCFVNRDFWDTDFAGLRFPDWTDCPCCVADTLGVSCQGGGDTGVG-DESLVEKAEAWYWEGGTPMVASFGGLIGLGLLVALCCCWGIRAANQKALSYKHFRGGGGRHEDYNHGGDTSPDVTPPVQRSSEDKDGNDPYAKHPGDVEAATATLSYGAKKNKRRANNASTKPQQDGTAAGRRKKKNIPADAIDASDLLAGQVGPPEPIKLPGTAKNCPPSDASWPSDPRVGVSVSGQKNPRWSGSRELRAYLRRTGYDKIEGDDQEQRRQRRPRSGDKRGSGDRCSGSRVLQAIKSTGSLLSEKSGSRYNNKFDWVDDGGXXXXXXRDVADPDADPDPAGFSISM 709
            A LL++F  PA CLGVLR LG T+D + +  +  GG C  GCVRTVV+A V + GEVDC+   LRVENLLDHT+EDV+GG+LNVVH C+NA G+L+YQ QG C YSVCV AEWK  L+TY+VVV H E +A HTV ++VYMNEYEDL   P+++V S ++         C LG +C  ++ACP+G SE+ +   D YGDGW G LP R+NTWT+T++ S    +S VA GTL D H+SG+T LCL+DG Y+F+ TADAAWSSE+ W+ C V+GG GGS++ ++S   CNV++ S   GPP + AETS GD C+ P++ PCV LDV V EV GPSVGMYYDESCLEGGGG TGCGGGGV  CR+CFVNR+FW  DF   R+PDW DCPCCVAD L V+CQ G +TG   DES+VEKAEA+YWEGGT + AS GGLIGLGL+ ALCCC  IR  NQ ALSYKHF        +Y   GDTSPDV+PP  + +       P       ++   A         K++ + A+ +P      A R +  +    A +  D   G+        LPG A   PPSDASWPSDPRVGVSVSG KNPRWSGSREL AYLRRTGY++++ +                       G+ V+QAIK+TGS+LSEKS SR +NKF  +++G              A+ D AG+S+SM
Sbjct:   38 ALLLVAFGAPA-CLGVLRRLGSTSDAIVAADIEPGGPCDAGCVRTVVNAEVYAAGEVDCE---LRVENLLDHTDEDVLGGSLNVVHSCTNAAGDLLYQDQGECLYSVCVTAEWKGELLTYTVVVEHAEPSAAHTVLIEVYMNEYEDLLDRPDVTVVSDSS-------VLCELGTSCADSSACPSGYSELVITTTDEYGDGWVGGLPDRSNTWTLTDASS----SSVVAEGTLHDWHFSGMTKLCLQDGDYSFETTADAAWSSESAWNVCEVDGGMGGSLDFEMSNSACNVLDSSSKDGPPATVAETSLGDFCALPADDPCVDLDVGVAEVRGPSVGMYYDESCLEGGGGDTGCGGGGVTVCRICFVNREFWLADFPDERYPDWLDCPCCVADALVVTCQAGVETGTASDESIVEKAEAFYWEGGTLLCASLGGLIGLGLITALCCCRDIRKTNQLALSYKHFGAAAVTQNNYKEEGDTSPDVSPPSGKDASVTPPAFPADDRERGLQTTAAAAGVETLAAKKKPSRAAPRP-----TARRERSADARGRAAEPPDDFDGE--------LPGAAAYQPPSDASWPSDPRVGVSVSGTKNPRWSGSRELNAYLRRTGYEEMDTEGGX------XXXXXXXXXXXXXXGNAVVQAIKTTGSMLSEKSKSRNSNKFARMEEG--------------AEHDEAGYSLSM 693

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BLAST of mRNA_C-linearis_contig10.479.1 vs. uniprot
Match: D7G003_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G003_ECTSI)

HSP 1 Score: 603 bits (1556), Expect = 2.780e-195
Identity = 326/622 (52.41%), Postives = 414/622 (66.56%), Query Frame = 0

Query:   73 VENLLDHTEEDVMGGALNVVHYCSNAEGELMYQGQGACQYSVCVNAEWKEGLMTYSVVVTH-EAAAEHTVHVQVYMNEYEDLEHVPNLSVGSSAASGEGQAQAQCRLGDTCEPATACPTGTSEVKVVAKDAYGDGWTGALPGRANTWTVTESLSPDDLASPVANGTLPDHHYSGVTTLCLEDGLYAFKATADAAWSSEATWSACGVEGGAGGSMELDLSGGTCNVVEDSGAGGPPDSDAETSSGDLCSQPSESPCVGLDVAVREVSGPSVGMYYDESCLEGGGGRTGCGGGGVPGCRVCFVNRDFWDTDFAGLRFPDWTDCPCCVADTLGVSCQGGGDTGVG-DESLVEKAEAWYWEGGTPMVASFGGLIGLGLLVALCCCWGIRAANQKALSYKHFRGGGGRHEDYNHGGDTSPDVTPPVQRSSEDKDGNDPYAKHPGDVEAATATLSYGAKKNKRRANNASTKPQQDGTAAGRRK--KKNIPADAIDASDLLAGQVGPPEP---IKLPGTAKNCPPSDASWPSDPRVGVSVSGQKNPRWSGSRELRAYLRRTGYDKIEGDD----QEQRRQRRPRSGDKRGSGDRCSGSRVLQAIKSTGSLLSEKSGSRYNNKFDWVDDG 683
            +ENLLDHT+EDV+GG+LNVVH C+NAEG+L+YQ QG C YSVCV AEWK  L+TY+VVV H E +A HTV V+VYMNEY+DL   P+++V + ++         C LG +C  ++ACP+G SE+ +   D YGDGW G LP R+NTW +T++ S    +S VA GTL D H+SG+T LCL+DG Y+F+ TA  AWSS++ W+ C V+GG GGS+E ++S   CNV++ S   GPP +DAETSSGDLC+ P++  CVG DV V EVSGPSVGMYYDE+CLEGGGG TGCGGGGV  CR+CFVNR+FW  DF   R+PDW DCPCCVAD LGV+CQGGG+TG   DES+VE+AEA+YWEGGT + AS GGLIGLGL+ ALCCC  IR ANQ ALSYKHFR        Y   GDTSPDV+PP  +++       P       ++ A              A   +   ++  + A  R   K   PA    ++D       PP+    ++LPG A   PPSDASWPSDPRVGVSVSG+KNPRWSGSREL AYLRRTGY++++ +                           G+ V+QAIK+TGS+LSEKS  R  ++F  +++G
Sbjct:    1 MENLLDHTDEDVLGGSLNVVHSCTNAEGDLLYQDQGECLYSVCVTAEWKGELLTYTVVVEHAEPSAAHTVLVEVYMNEYQDLLDRPDVTVVADSS-------VLCELGTSCAASSACPSGYSELVITTTDEYGDGWVGGLPDRSNTWALTDAAS----SSVVAEGTLHDWHFSGMTKLCLQDGDYSFETTAYTAWSSDSAWNVCEVDGGMGGSLEFEVSSSACNVLDSSSKDGPPATDAETSSGDLCALPADDACVGFDVGVAEVSGPSVGMYYDEACLEGGGGNTGCGGGGVTACRICFVNREFWLADFPDERYPDWLDCPCCVADALGVTCQGGGETGTASDESIVEQAEAFYWEGGTLLYASLGGLIGLGLITALCCCRDIRKANQLALSYKHFRAAAVTQNKYKEDGDTSPDVSPPSGKNASVTPPAFPTDDRERGLQTAATXXXXXXXXXXXXAGVETLAAKKKPSRAAPRPTAKSGKPARRERSADARGRAAEPPDDFDDVELPGAAAYQPPSDASWPSDPRVGVSVSGKKNPRWSGSRELNAYLRRTGYEEMDTEGGXXXXXXXXXXXXXXXXXXXXXXXXXGNAVVQAIKTTGSMLSEKSKGRKGSQFARMEEG 611

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig10.479.1 vs. uniprot

BLAST of mRNA_C-linearis_contig10.479.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2

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POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KLX8_9PHAE	7.430e-218	52.27	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G003_ECTSI	2.780e-195	52.41	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 869..912
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 455..1028
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 432..454
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..431
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..22 score: 0.844

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig10	contig	C-linearis_contig10:1087002..1097938 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig10.479.1	mRNA_C-linearis_contig10.479.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig10 1085355..1098181 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig10.479.1 ID=prot_C-linearis_contig10.479.1|Name=mRNA_C-linearis_contig10.479.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1029bp
MVPAAFCAALLLSFSLPAPCLGVLRDLGLTADFVDSEHVAQGGSCANGCV
RTVVDAVVISIGEVDCDFGGLRVENLLDHTEEDVMGGALNVVHYCSNAEG
ELMYQGQGACQYSVCVNAEWKEGLMTYSVVVTHEAAAEHTVHVQVYMNEY
EDLEHVPNLSVGSSAASGEGQAQAQCRLGDTCEPATACPTGTSEVKVVAK
DAYGDGWTGALPGRANTWTVTESLSPDDLASPVANGTLPDHHYSGVTTLC
LEDGLYAFKATADAAWSSEATWSACGVEGGAGGSMELDLSGGTCNVVEDS
GAGGPPDSDAETSSGDLCSQPSESPCVGLDVAVREVSGPSVGMYYDESCL
EGGGGRTGCGGGGVPGCRVCFVNRDFWDTDFAGLRFPDWTDCPCCVADTL
GVSCQGGGDTGVGDESLVEKAEAWYWEGGTPMVASFGGLIGLGLLVALCC
CWGIRAANQKALSYKHFRGGGGRHEDYNHGGDTSPDVTPPVQRSSEDKDG
NDPYAKHPGDVEAATATLSYGAKKNKRRANNASTKPQQDGTAAGRRKKKN
IPADAIDASDLLAGQVGPPEPIKLPGTAKNCPPSDASWPSDPRVGVSVSG
QKNPRWSGSRELRAYLRRTGYDKIEGDDQEQRRQRRPRSGDKRGSGDRCS
GSRVLQAIKSTGSLLSEKSGSRYNNKFDWVDDGGGGQQQQRDVADPDADP
DPAGFSISMGDIGGMDVDIDDTGHGKSRGRRGRDGRGANSEAKQPETYSR
STSRGNKPANGTSHRRGGSRKDSRTAADLFSGAGGSGLPRDNNNPSRSLS
HLLSGGGNGNDQRHPGRSRRSSKSVEPGGAGAQGRGGSGHTRSRSSQARQ
AAALAESSLEAERSRAAIGARKKEEAEQQRAERARQQQQKKREEQERERK
EAEGRERKAHQQQQQQQRQRQQQGRRRRGGRKAAPAPATPSAARGRRTRR
PRPSPRAGGLRPTRRSHEARRRSHRRQPERRRPRAGARPQRRKGARLRAG
HTRGEERVHLQQPAARGRRAGPQQEREP*