mRNA_C-linearis_contig10.479.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.479.1 vs. uniprot
Match: A0A6H5KLX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX8_9PHAE) HSP 1 Score: 666 bits (1719), Expect = 1.960e-211 Identity = 369/707 (52.19%), Postives = 463/707 (65.49%), Query Frame = 1 Query: 256 AFCAALLLSFSLPAPCLGVLRDLGLTADFVDSEHVAQGGSCANGCVRTVVDAVVISIGEVDCDFGGLRVENLLDHTEEDVMGGALNVVHYCSNAEGELMYQGQGACQYSVCVNAEWKEGLMTYSVVVTH-EAAAEHTVHVQVYMNEYEDLEHVPNLSVGSSAASGEGQAQAQCRLGDTCEPATACPTGTSEVKVVAKDAYGDGWTGALPGRANTWTVTESLSPDDLASPVANGTLPDHHYSGVTTLCLEDGLYAFKATADAAWSSEATWSACGVEGGAGGSMELDLSGGTCNVVEDSGAGGPPDSDAETSSGDLCSQPSESPCVGLDVAVREVSGPSVGMYYDESCLEGGGGRTGCGGGGVPGCRVCFVNRDFWDTDFAGLRFPDWTDCPCCVADTLGVSCQGGGDTGVG-DESLVEKAEAWYWEGGTPMVASFGGLIGLGLLVALCCCWGIRAANQKALSYKHFRGGGGRHEDYNHGGDTSPDVTPPVQRSSEDKDGNDPYAKHPGDVEAATATLSYGAKKNKRRANNASTKPQQDGTAAGRRKKKNIPADAIDASDLLAGQVGPPEPIKLPGTAKNCPPSDASWPSDPRVGVSVSGQKNPRWSGSRELRAYLRRTGYDKIEGDDQEQRRQRRPRSGDKRGSGDRCSGSRVLQAIKSTGSLLSEKSGSRYNNKFDWVDDGGXXXXXXRDVADPDADPDPAGFSISM 2370
A A LL++F PA CLGVLR LG T+D + + + GG C GCVRTVV+A V + GEVDC+ LRVENLLDHT+EDV+GG+LNVVH C+NA G+L+YQ QG C YSVCV AEWK L+TY+VVV H E +A HTV ++VYMNEYEDL P+++V S ++ C LG +C ++ACP+G SE+ + D YGDGW G LP R+NTWT+T++ S +S VA GTL D H+SG+T LCL+DG Y+F+ TADAAWSSE+ W+ C V+GG GGS++ ++S CNV++ S GPP + AETS GD C+ P++ PCV LDV V EV GPSVGMYYDESCLEGGGG TGCGGGGV CR+CFVNR+FW DF R+PDW DCPCCVAD L V+CQ G +TG DES+VEKAEA+YWEGGT + AS GGLIGLGL+ ALCCC IR NQ ALSYKHF +Y GDTSPDV+PP + + P ++ A K++ + A+ +P A R + + A + D G+ LPG A PPSDASWPSDPRVGVSVSG KNPRWSGSREL AYLRRTGY++++ + G+ V+QAIK+TGS+LSEKS SR +NKF +++G A+ D AG+S+SM
Sbjct: 35 ARAALLLVAFGAPA-CLGVLRRLGSTSDAIVAADIEPGGPCDAGCVRTVVNAEVYAAGEVDCE---LRVENLLDHTDEDVLGGSLNVVHSCTNAAGDLLYQDQGECLYSVCVTAEWKGELLTYTVVVEHAEPSAAHTVLIEVYMNEYEDLLDRPDVTVVSDSS-------VLCELGTSCADSSACPSGYSELVITTTDEYGDGWVGGLPDRSNTWTLTDASS----SSVVAEGTLHDWHFSGMTKLCLQDGDYSFETTADAAWSSESAWNVCEVDGGMGGSLDFEMSNSACNVLDSSSKDGPPATVAETSLGDFCALPADDPCVDLDVGVAEVRGPSVGMYYDESCLEGGGGDTGCGGGGVTVCRICFVNREFWLADFPDERYPDWLDCPCCVADALVVTCQAGVETGTASDESIVEKAEAFYWEGGTLLCASLGGLIGLGLITALCCCRDIRKTNQLALSYKHFGAAAVTQNNYKEEGDTSPDVSPPSGKDASVTPPAFPADDRERGLQTTAAAAGVETLAAKKKPSRAAPRP-----TARRERSADARGRAAEPPDDFDGE--------LPGAAAYQPPSDASWPSDPRVGVSVSGTKNPRWSGSRELNAYLRRTGYEEMDTEGGX------XXXXXXXXXXXXXXGNAVVQAIKTTGSMLSEKSKSRNSNKFARMEEG--------------AEHDEAGYSLSM 693
BLAST of mRNA_C-linearis_contig10.479.1 vs. uniprot
Match: D7G003_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G003_ECTSI) HSP 1 Score: 603 bits (1556), Expect = 1.780e-188 Identity = 326/622 (52.41%), Postives = 414/622 (66.56%), Query Frame = 1 Query: 460 VENLLDHTEEDVMGGALNVVHYCSNAEGELMYQGQGACQYSVCVNAEWKEGLMTYSVVVTH-EAAAEHTVHVQVYMNEYEDLEHVPNLSVGSSAASGEGQAQAQCRLGDTCEPATACPTGTSEVKVVAKDAYGDGWTGALPGRANTWTVTESLSPDDLASPVANGTLPDHHYSGVTTLCLEDGLYAFKATADAAWSSEATWSACGVEGGAGGSMELDLSGGTCNVVEDSGAGGPPDSDAETSSGDLCSQPSESPCVGLDVAVREVSGPSVGMYYDESCLEGGGGRTGCGGGGVPGCRVCFVNRDFWDTDFAGLRFPDWTDCPCCVADTLGVSCQGGGDTGVG-DESLVEKAEAWYWEGGTPMVASFGGLIGLGLLVALCCCWGIRAANQKALSYKHFRGGGGRHEDYNHGGDTSPDVTPPVQRSSEDKDGNDPYAKHPGDVEAATATLSYGAKKNKRRANNASTKPQQDGTAAGRRK--KKNIPADAIDASDLLAGQVGPPEP---IKLPGTAKNCPPSDASWPSDPRVGVSVSGQKNPRWSGSRELRAYLRRTGYDKIEGDD----QEQRRQRRPRSGDKRGSGDRCSGSRVLQAIKSTGSLLSEKSGSRYNNKFDWVDDG 2292
+ENLLDHT+EDV+GG+LNVVH C+NAEG+L+YQ QG C YSVCV AEWK L+TY+VVV H E +A HTV V+VYMNEY+DL P+++V + ++ C LG +C ++ACP+G SE+ + D YGDGW G LP R+NTW +T++ S +S VA GTL D H+SG+T LCL+DG Y+F+ TA AWSS++ W+ C V+GG GGS+E ++S CNV++ S GPP +DAETSSGDLC+ P++ CVG DV V EVSGPSVGMYYDE+CLEGGGG TGCGGGGV CR+CFVNR+FW DF R+PDW DCPCCVAD LGV+CQGGG+TG DES+VE+AEA+YWEGGT + AS GGLIGLGL+ ALCCC IR ANQ ALSYKHFR Y GDTSPDV+PP +++ P ++ A A + ++ + A R K PA ++D PP+ ++LPG A PPSDASWPSDPRVGVSVSG+KNPRWSGSREL AYLRRTGY++++ + G+ V+QAIK+TGS+LSEKS R ++F +++G
Sbjct: 1 MENLLDHTDEDVLGGSLNVVHSCTNAEGDLLYQDQGECLYSVCVTAEWKGELLTYTVVVEHAEPSAAHTVLVEVYMNEYQDLLDRPDVTVVADSS-------VLCELGTSCAASSACPSGYSELVITTTDEYGDGWVGGLPDRSNTWALTDAAS----SSVVAEGTLHDWHFSGMTKLCLQDGDYSFETTAYTAWSSDSAWNVCEVDGGMGGSLEFEVSSSACNVLDSSSKDGPPATDAETSSGDLCALPADDACVGFDVGVAEVSGPSVGMYYDEACLEGGGGNTGCGGGGVTACRICFVNREFWLADFPDERYPDWLDCPCCVADALGVTCQGGGETGTASDESIVEQAEAFYWEGGTLLYASLGGLIGLGLITALCCCRDIRKANQLALSYKHFRAAAVTQNKYKEDGDTSPDVSPPSGKNASVTPPAFPTDDRERGLQTAATXXXXXXXXXXXXAGVETLAAKKKPSRAAPRPTAKSGKPARRERSADARGRAAEPPDDFDDVELPGAAAYQPPSDASWPSDPRVGVSVSGKKNPRWSGSRELNAYLRRTGYEEMDTEGGXXXXXXXXXXXXXXXXXXXXXXXXXGNAVVQAIKTTGSMLSEKSKGRKGSQFARMEEG 611 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.479.1 >prot_C-linearis_contig10.479.1 ID=prot_C-linearis_contig10.479.1|Name=mRNA_C-linearis_contig10.479.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1029bp MVPAAFCAALLLSFSLPAPCLGVLRDLGLTADFVDSEHVAQGGSCANGCVback to top mRNA from alignment at C-linearis_contig10:1085355..1098181- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.479.1 ID=mRNA_C-linearis_contig10.479.1|Name=mRNA_C-linearis_contig10.479.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=12827bp|location=Sequence derived from alignment at C-linearis_contig10:1085355..1098181- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1085355..1098181- >mRNA_C-linearis_contig10.479.1 ID=mRNA_C-linearis_contig10.479.1|Name=mRNA_C-linearis_contig10.479.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=6174bp|location=Sequence derived from alignment at C-linearis_contig10:1085355..1098181- (Chordaria linearis ClinC8C monoicous)back to top |