prot_C-linearis_contig1.116.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig1.116.1
Unique Nameprot_C-linearis_contig1.116.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length263
Homology
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: D7FIZ3_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ3_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 2.280e-121
Identity = 191/259 (73.75%), Postives = 209/259 (80.69%), Query Frame = 0
Query:    6 PKFISLGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTG-LIREPPYAQGFAVKITGPGSVFIQSTHTGRLSRAGRAS--AQRASGGSEMMKVAVLTLVAMIALFSFLDWEE 261
            P+F+SLG+G+EVLQVAL  GD+ILANE+AFVYRGLGL  E Q  G +GRA+GWIG K+DR+VKFTNEGN PTYLGL A  PGKVIPV L  SGTLLAKPS FL S   N +S AKIKL  EG       Q S+EMR++AGAGMCYI GGGAAVQKALGRGESMVVEFGCVAAVS+ACKIV EER G LIREPPY QGF VKITGPGSVFIQSTHTGRLSRA RA   AQ  SGG +MMK AVLTLV MI +F+ LDWEE
Sbjct:   18 PRFLSLGEGSEVLQVALCPGDAILANEKAFVYRGLGLQQELQPTGPMGRALGWIGVKNDRVVKFTNEGNSPTYLGLTASLPGKVIPVSLAKSGTLLAKPSVFLCSVVENDISTAKIKLQSEG----QSSQQSVEMRKIAGAGMCYIHGGGAAVQKALGRGESMVVEFGCVAAVSDACKIVPEERNGPLIREPPYFQGFQVKITGPGSVFIQSTHTGRLSRASRADRVAQGGSGGGDMMKAAVLTLVIMIVVFTVLDWEE 272          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A2K1NT36_9BACT (Uncharacterized protein n=1 Tax=Petrotoga sp. 9PWA.NaAc.5.4 TaxID=1434328 RepID=A0A2K1NT36_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 5.210e-15
Identity = 61/215 (28.37%), Postives = 105/215 (48.84%), Query Frame = 0
Query:   12 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAI--GWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 222
            GD  +++++ L  G+ I A   A +Y   G+A +    G + R +   + G +S  I  F  EG+G  ++   AP+PGK++P+ L Q +G+ + +  +FL +     +     K    G F          ++RL G GM +I  GG  ++K L  GE++ V+ GC+    +  K   +   G        +G F  K+TGPG++++QS    RL
Sbjct:   11 GDDMQLVEIELDPGEGIRAEVGAMMYMEDGIAMQTNTGGGLFRGLKRAFAG-ESFFITNFVQEGSGKGHVAFGAPYPGKILPIDLIQFNGSFICQKDSFLCAANGIEIEIEFTKRIGTGLFGGE----GFILQRLEGHGMAFIHAGGTVIEKHLEPGETLRVDTGCIVGFQKTVKYDIQFVGGFKNALFGGEGMFLAKLTGPGTIYLQSLPFSRL 220          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: B7KDN9_GLOC7 (Uncharacterized protein n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7KDN9_GLOC7)

HSP 1 Score: 81.3 bits (199), Expect = 9.910e-15
Identity = 64/217 (29.49%), Postives = 98/217 (45.16%), Query Frame = 0
Query:   12 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAV----GRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 222
            GD  +++++ L  G+ + A   A  Y   G+  +    G       RA+   GF    I  F N G     +  AAP+PGK+IP+ L Q  GT + +   F+ +     +     K    G     F      ++RL G G+ +I  GGA V+K L  GE + V+ GCV A S   +   E   G        +G F  K+TGPG++++QS    +L
Sbjct:   11 GDDLQLVEITLDLGEGVRAEAGAMAYLEQGIEMQTSTGGGFLAGFKRALAGEGFF---ITNFANRGTRRAKVAFAAPYPGKIIPLQLGQLGGTFICQKDAFICAAKGIEIDVEFTKRLGTG----FFGGEGFILQRLQGDGLAFIHAGGALVEKRLMSGEDIRVDTGCVVAFSPTVRYEIEMVKGFKNVLFGGEGLFLAKLTGPGTIYLQSLPLSKL 220          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: D8R929_SELML (Altered inheritance of mitochondria protein 24, mitochondrial n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R929_SELML)

HSP 1 Score: 80.1 bits (196), Expect = 5.660e-14
Identity = 66/225 (29.33%), Postives = 105/225 (46.67%), Query Frame = 0
Query:    4 ASPKFISLGDGNEVLQVALAAGDSILANERAFVYRGLGLASEA---QAVGAVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG--FAVKITGPGSVFIQSTHTGRL 222
            A+  F   G   +VLQ+ L   + I A   +  Y    + +E    Q    VG  + W+  + D    FTN G+   Y+GL AP   +++P+ L    G ++ +   FL S    TV     +    G F        +  ++L G G+ +I  GG+ +QK L RGE +VV+ GC+ A++ A +   ++ +   R   +     F   +TGPG VFIQS  + RL
Sbjct:   22 AATAFQIFGFEAQVLQIMLKPQEKIQAKSGSMCYTSGSIQAEVNVPQENAGVG-VLQWMMGRPDTSTTFTNAGSEDGYIGLGAPSLARILPIDLAVFGGEIICQREAFLGSVNDVTVKHLTPRRVRVGYFGADVG--GLLTQKLVGQGLAFITAGGSVLQKKLSRGELLVVDIGCLVAMTSAVECEIKQASPAARRAFFGGECPFQAHLTGPGVVFIQSLPSQRL 243          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A524PQU6_9CHLR (TIGR00266 family protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524PQU6_9CHLR)

HSP 1 Score: 78.6 bits (192), Expect = 1.320e-13
Identity = 60/214 (28.04%), Postives = 102/214 (47.66%), Query Frame = 0
Query:   12 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGW-IGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 222
            GD  +++++ L  G+ + A      Y   G+  +    G + + +   I  +S  I  F N G+   +   AAP+PGK+IP+ L    G ++ +  +FL +     +  A  K    G F          ++RL G+GM ++  GG  ++K L  GES+ V+ GC+ A+S+      +   G        +G F  K+TGPG+V++QS    RL
Sbjct:   11 GDDLQLVEIELDPGEGVRAEAGTMTYMEDGIQMQTTTGGGIFKGLQRAITGESFFISTFLNTGSTKQHAAFAAPYPGKIIPLSLDDFDGNIICQKDSFLCAAQGIEIEIAFTKRLGAGIFGGE----GFILQRLTGSGMTFVHAGGTVIEKKLAAGESLRVDTGCLVALSKDVDYDIKFVGGFTNALFGGEGLFLAKLTGPGTVYLQSLPFSRL 220          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: UPI000B97F997 (TIGR00266 family protein n=1 Tax=Petroclostridium xylanilyticum TaxID=1792311 RepID=UPI000B97F997)

HSP 1 Score: 78.6 bits (192), Expect = 1.320e-13
Identity = 64/219 (29.22%), Postives = 101/219 (46.12%), Query Frame = 0
Query:   12 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFK------SDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 222
            GD  +++++ L  G+ + A   A ++   G+  +    G + +     GFK      S  I  F N G+G +++  AAP+PGK+IP+ L    G  L +   FL +     V  A  K    G     F      ++RL G GM +I  GG  ++K L  GE + V+ GC+ A S       +   G        +G F  ++TGPG+V++QS    RL
Sbjct:   11 GDDMQMVEIELDPGEGVRAEAGAMMFMEKGIEMQTSTEGGLFK-----GFKRMITGESFFITTFYNSGHGKSHVAFAAPYPGKIIPLDLGLIGGRFLCQKDAFLCAAKGIEVEIAFTKRIGAG----FFGGEGFILQRLEGNGMAFIHAGGTIIKKELAPGEVLRVDTGCLVAFSPTVDYDIQFIGGFKNALFGGEGLFLARLTGPGTVYLQSLPFSRL 220          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A316CV55_9BACT (Uncharacterized protein (TIGR00266 family) n=1 Tax=Oceanotoga teriensis TaxID=515440 RepID=A0A316CV55_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.900e-13
Identity = 59/215 (27.44%), Postives = 101/215 (46.98%), Query Frame = 0
Query:   11 LGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIG-WIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 222
            +GD  +++++ L  G+ + A   A +Y    +  +    G + R +      +S  I  F   G+G  ++   AP+PGK++P++L   +GT + +  +FL +     +     K    G F          ++RL G GM +I  GGA V+K L  GE + V+ GC+   S +     E   G        +G F  K++GPG+V++QS    RL
Sbjct:   10 VGDDMQLVEIELDPGEGVRAEAGAMMYMENDIMMQTNTGGGLFRGLKRMFTGESFFITNFVQNGSGKGHVAFGAPYPGKIVPLNLTDFNGTFICQKDSFLCAANGIEIEIELTKKIGTGLFGGE----GFILQRLQGHGMAFIHAGGALVEKQLNAGEILKVDTGCIVGFSNSIHYDIEFIGGFKNALFGGEGMFLAKLSGPGTVYLQSLPFSRL 220          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: B3QRX8_CHLT3 (Uncharacterized protein n=2 Tax=Chloroherpeton thalassium TaxID=100716 RepID=B3QRX8_CHLT3)

HSP 1 Score: 77.4 bits (189), Expect = 3.460e-13
Identity = 67/233 (28.76%), Postives = 108/233 (46.35%), Query Frame = 0
Query:   12 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFK------SDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRLSRAGRASAQRASGG 236
            GD  ++++V L   + + A   A +Y   G+  +    G +     + GFK      S  I  F N+G+G   +  AAP+PGK++P+ L Q  G  L +   FL       ++ A  +    G F          ++RL G G+ +I  GG  +++ L  GES+ V+ GC+ A++ +         G        +G F  K+TGPG+V++QS    R+  A R  A   SGG
Sbjct:   25 GDDMQIVEVELDPQEGVRAEVGAMLYMEDGIQMQTDTGGGL-----FSGFKRMLTGESFFITSFVNQGHGKQRVAFAAPYPGKIVPLDLGQLGGEFLCQKDGFLCCANGVDINVAFTRRIGSGLFGGE----GFILQRLTGDGLAFIHAGGTIIKRELQAGESLRVDTGCLVALAPSVDYDINFVGGFKNALFGGEGLFLAKLTGPGTVYLQSLPFSRI--ADRILASLPSGG 246          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A101F7P3_9FIRM (Uncharacterized protein n=2 Tax=Clostridia TaxID=186801 RepID=A0A101F7P3_9FIRM)

HSP 1 Score: 77.0 bits (188), Expect = 3.520e-13
Identity = 60/214 (28.04%), Postives = 102/214 (47.66%), Query Frame = 0
Query:   11 LGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 222
            +GD  +++++ L   + + A   A +Y   G+  +  + G        +  +S  I  F N   G  Y+G AAP+PGKVIP+ L ++ G+ L +   FL +     +S A  +    G F          ++RL G G+ ++  GG  V+K L  GES+ V+ GC+ A +       +   G        +G F  ++TGPG+V++Q+    RL
Sbjct:   10 IGDDLQMVEIGLDFEEGVRAEAGAMLYMEDGIEMQTASGGLFKGFKRMLTGESFFITTFINRVKGKRYVGFAAPYPGKVIPLDLGESGGSYLCQKDAFLCAAQGIEISVAFSRRLGAGLFGGE----GFILQRLEGDGLAFVHAGGTVVRKQLQAGESLRVDTGCLVAFAPTVDYDIQFVGGFKNALFGGEGVFLARLTGPGTVYLQTLPFARL 219          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A4R6BV49_9STAP (AIM24 family protein n=2 Tax=Macrococcus TaxID=69965 RepID=A0A4R6BV49_9STAP)

HSP 1 Score: 77.4 bits (189), Expect = 3.980e-13
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 0
Query:   69 FTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 222
            FTN+G    ++ LAAP+PGK+IP+ L +  G  + +   FL +    +V  A  K    G     F      M+RL G GM +I  GGA ++K L  GE + V+ GC+  ++ + K   E   G+  +    +G +  ++ GPG+VFIQS    RL
Sbjct:   81 FTNKGKSKEHVYLAAPYPGKIIPIDLNRVGGEFICQKDAFLGAAKGVSVGIAMQKKIGVG----FFGGEGFIMQRLTGDGMAFIHAGGAIIKKDLKAGEVLQVDTGCLVGMTSSVKYDLERVPGIKTKLFGGEGVWFARLEGPGTVFIQSLPFSRL 232          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIZ3_ECTSI2.280e-12173.75Altered inheritance of mitochondria protein 24, mi... [more]
A0A2K1NT36_9BACT5.210e-1528.37Uncharacterized protein n=1 Tax=Petrotoga sp. 9PWA... [more]
B7KDN9_GLOC79.910e-1529.49Uncharacterized protein n=1 Tax=Gloeothece citrifo... [more]
D8R929_SELML5.660e-1429.33Altered inheritance of mitochondria protein 24, mi... [more]
A0A524PQU6_9CHLR1.320e-1328.04TIGR00266 family protein n=1 Tax=Anaerolineales ba... [more]
UPI000B97F9971.320e-1329.22TIGR00266 family protein n=1 Tax=Petroclostridium ... [more]
A0A316CV55_9BACT1.900e-1327.44Uncharacterized protein (TIGR00266 family) n=1 Tax... [more]
B3QRX8_CHLT33.460e-1328.76Uncharacterized protein n=2 Tax=Chloroherpeton tha... [more]
A0A101F7P3_9FIRM3.520e-1328.04Uncharacterized protein n=2 Tax=Clostridia TaxID=1... [more]
A0A4R6BV49_9STAP3.980e-1333.97AIM24 family protein n=2 Tax=Macrococcus TaxID=699... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036983Mitochondrial biogenesis AIM24 superfamilyGENE3D3.60.160.10coord: 5..238
e-value: 8.7E-32
score: 112.0
IPR002838Mitochondrial biogenesis protein AIM24PFAMPF01987AIM24coord: 11..217
e-value: 9.9E-32
score: 110.4
NoneNo IPR availablePANTHERPTHR43657FAMILY NOT NAMEDcoord: 11..235
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 258..262
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..238
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 239..257
IPR016031Tryptophan RNA-binding attenuator protein-like domain superfamilySUPERFAMILY51219TRAP-likecoord: 11..224

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig1contigC-linearis_contig1:1639984..1642966 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig1.116.1mRNA_C-linearis_contig1.116.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig1 1639778..1643160 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig1.116.1 ID=prot_C-linearis_contig1.116.1|Name=mRNA_C-linearis_contig1.116.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=263bp
MADASPKFISLGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVG
AVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQTSGTL
LAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCY
IQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQ
GFAVKITGPGSVFIQSTHTGRLSRAGRASAQRASGGSEMMKVAVLTLVAM
IALFSFLDWEEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036983AIM24_sf
IPR002838AIM24
IPR016031Trp_RNA-bd_attenuator-like_dom