mRNA_C-linearis_contig1.116.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig1.116.1
Unique NamemRNA_C-linearis_contig1.116.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: D7FIZ3_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ3_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 4.280e-119
Identity = 191/259 (73.75%), Postives = 209/259 (80.69%), Query Frame = 3
Query:  210 PKFISLGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTG-LIREPPYAQGFAVKITGPGSVFIQSTHTGRLSRAGRAS--AQRASGGSEMMKVAVLTLVAMIALFSFLDWEE 977
            P+F+SLG+G+EVLQVAL  GD+ILANE+AFVYRGLGL  E Q  G +GRA+GWIG K+DR+VKFTNEGN PTYLGL A  PGKVIPV L  SGTLLAKPS FL S   N +S AKIKL  EG       Q S+EMR++AGAGMCYI GGGAAVQKALGRGESMVVEFGCVAAVS+ACKIV EER G LIREPPY QGF VKITGPGSVFIQSTHTGRLSRA RA   AQ  SGG +MMK AVLTLV MI +F+ LDWEE
Sbjct:   18 PRFLSLGEGSEVLQVALCPGDAILANEKAFVYRGLGLQQELQPTGPMGRALGWIGVKNDRVVKFTNEGNSPTYLGLTASLPGKVIPVSLAKSGTLLAKPSVFLCSVVENDISTAKIKLQSEG----QSSQQSVEMRKIAGAGMCYIHGGGAAVQKALGRGESMVVEFGCVAAVSDACKIVPEERNGPLIREPPYFQGFQVKITGPGSVFIQSTHTGRLSRASRADRVAQGGSGGGDMMKAAVLTLVIMIVVFTVLDWEE 272          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A2K1NT36_9BACT (Uncharacterized protein n=1 Tax=Petrotoga sp. 9PWA.NaAc.5.4 TaxID=1434328 RepID=A0A2K1NT36_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 2.890e-14
Identity = 61/215 (28.37%), Postives = 105/215 (48.84%), Query Frame = 3
Query:  228 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAI--GWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
            GD  +++++ L  G+ I A   A +Y   G+A +    G + R +   + G +S  I  F  EG+G  ++   AP+PGK++P+ L Q +G+ + +  +FL +     +     K    G F          ++RL G GM +I  GG  ++K L  GE++ V+ GC+    +  K   +   G        +G F  K+TGPG++++QS    RL
Sbjct:   11 GDDMQLVEIELDPGEGIRAEVGAMMYMEDGIAMQTNTGGGLFRGLKRAFAG-ESFFITNFVQEGSGKGHVAFGAPYPGKILPIDLIQFNGSFICQKDSFLCAANGIEIEIEFTKRIGTGLFGGE----GFILQRLEGHGMAFIHAGGTVIEKHLEPGETLRVDTGCIVGFQKTVKYDIQFVGGFKNALFGGEGMFLAKLTGPGTIYLQSLPFSRL 220          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: B7KDN9_GLOC7 (Uncharacterized protein n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7KDN9_GLOC7)

HSP 1 Score: 81.3 bits (199), Expect = 5.220e-14
Identity = 64/217 (29.49%), Postives = 98/217 (45.16%), Query Frame = 3
Query:  228 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAV----GRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
            GD  +++++ L  G+ + A   A  Y   G+  +    G       RA+   GF    I  F N G     +  AAP+PGK+IP+ L Q  GT + +   F+ +     +     K    G     F      ++RL G G+ +I  GGA V+K L  GE + V+ GCV A S   +   E   G        +G F  K+TGPG++++QS    +L
Sbjct:   11 GDDLQLVEITLDLGEGVRAEAGAMAYLEQGIEMQTSTGGGFLAGFKRALAGEGFF---ITNFANRGTRRAKVAFAAPYPGKIIPLQLGQLGGTFICQKDAFICAAKGIEIDVEFTKRLGTG----FFGGEGFILQRLQGDGLAFIHAGGALVEKRLMSGEDIRVDTGCVVAFSPTVRYEIEMVKGFKNVLFGGEGLFLAKLTGPGTIYLQSLPLSKL 220          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: D8R929_SELML (Altered inheritance of mitochondria protein 24, mitochondrial n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R929_SELML)

HSP 1 Score: 80.5 bits (197), Expect = 2.170e-13
Identity = 66/225 (29.33%), Postives = 105/225 (46.67%), Query Frame = 3
Query:  204 ASPKFISLGDGNEVLQVALAAGDSILANERAFVYRGLGLASEA---QAVGAVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG--FAVKITGPGSVFIQSTHTGRL 860
            A+  F   G   +VLQ+ L   + I A   +  Y    + +E    Q    VG  + W+  + D    FTN G+   Y+GL AP   +++P+ L    G ++ +   FL S    TV     +    G F        +  ++L G G+ +I  GG+ +QK L RGE +VV+ GC+ A++ A +   ++ +   R   +     F   +TGPG VFIQS  + RL
Sbjct:   22 AATAFQIFGFEAQVLQIMLKPQEKIQAKSGSMCYTSGSIQAEVNVPQENAGVG-VLQWMMGRPDTSTTFTNAGSEDGYIGLGAPSLARILPIDLAVFGGEIICQREAFLGSVNDVTVKHLTPRRVRVGYFGADVG--GLLTQKLVGQGLAFITAGGSVLQKKLSRGELLVVDIGCLVAMTSAVECEIKQASPAARRAFFGGECPFQAHLTGPGVVFIQSLPSQRL 243          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A524PQU6_9CHLR (TIGR00266 family protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524PQU6_9CHLR)

HSP 1 Score: 78.6 bits (192), Expect = 6.360e-13
Identity = 60/214 (28.04%), Postives = 102/214 (47.66%), Query Frame = 3
Query:  228 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGW-IGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
            GD  +++++ L  G+ + A      Y   G+  +    G + + +   I  +S  I  F N G+   +   AAP+PGK+IP+ L    G ++ +  +FL +     +  A  K    G F          ++RL G+GM ++  GG  ++K L  GES+ V+ GC+ A+S+      +   G        +G F  K+TGPG+V++QS    RL
Sbjct:   11 GDDLQLVEIELDPGEGVRAEAGTMTYMEDGIQMQTTTGGGIFKGLQRAITGESFFISTFLNTGSTKQHAAFAAPYPGKIIPLSLDDFDGNIICQKDSFLCAAQGIEIEIAFTKRLGAGIFGGE----GFILQRLTGSGMTFVHAGGTVIEKKLAAGESLRVDTGCLVALSKDVDYDIKFVGGFTNALFGGEGLFLAKLTGPGTVYLQSLPFSRL 220          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: UPI000B97F997 (TIGR00266 family protein n=1 Tax=Petroclostridium xylanilyticum TaxID=1792311 RepID=UPI000B97F997)

HSP 1 Score: 78.6 bits (192), Expect = 6.360e-13
Identity = 64/219 (29.22%), Postives = 101/219 (46.12%), Query Frame = 3
Query:  228 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFK------SDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
            GD  +++++ L  G+ + A   A ++   G+  +    G + +     GFK      S  I  F N G+G +++  AAP+PGK+IP+ L    G  L +   FL +     V  A  K    G     F      ++RL G GM +I  GG  ++K L  GE + V+ GC+ A S       +   G        +G F  ++TGPG+V++QS    RL
Sbjct:   11 GDDMQMVEIELDPGEGVRAEAGAMMFMEKGIEMQTSTEGGLFK-----GFKRMITGESFFITTFYNSGHGKSHVAFAAPYPGKIIPLDLGLIGGRFLCQKDAFLCAAKGIEVEIAFTKRIGAG----FFGGEGFILQRLEGNGMAFIHAGGTIIKKELAPGEVLRVDTGCLVAFSPTVDYDIQFIGGFKNALFGGEGLFLARLTGPGTVYLQSLPFSRL 220          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A316CV55_9BACT (Uncharacterized protein (TIGR00266 family) n=1 Tax=Oceanotoga teriensis TaxID=515440 RepID=A0A316CV55_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 9.050e-13
Identity = 59/215 (27.44%), Postives = 101/215 (46.98%), Query Frame = 3
Query:  225 LGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIG-WIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
            +GD  +++++ L  G+ + A   A +Y    +  +    G + R +      +S  I  F   G+G  ++   AP+PGK++P++L   +GT + +  +FL +     +     K    G F          ++RL G GM +I  GGA V+K L  GE + V+ GC+   S +     E   G        +G F  K++GPG+V++QS    RL
Sbjct:   10 VGDDMQLVEIELDPGEGVRAEAGAMMYMENDIMMQTNTGGGLFRGLKRMFTGESFFITNFVQNGSGKGHVAFGAPYPGKIVPLNLTDFNGTFICQKDSFLCAANGIEIEIELTKKIGTGLFGGE----GFILQRLQGHGMAFIHAGGALVEKQLNAGEILKVDTGCIVGFSNSIHYDIEFIGGFKNALFGGEGMFLAKLSGPGTVYLQSLPFSRL 220          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A101F7P3_9FIRM (Uncharacterized protein n=2 Tax=Clostridia TaxID=186801 RepID=A0A101F7P3_9FIRM)

HSP 1 Score: 77.0 bits (188), Expect = 1.580e-12
Identity = 60/214 (28.04%), Postives = 102/214 (47.66%), Query Frame = 3
Query:  225 LGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
            +GD  +++++ L   + + A   A +Y   G+  +  + G        +  +S  I  F N   G  Y+G AAP+PGKVIP+ L ++ G+ L +   FL +     +S A  +    G F          ++RL G G+ ++  GG  V+K L  GES+ V+ GC+ A +       +   G        +G F  ++TGPG+V++Q+    RL
Sbjct:   10 IGDDLQMVEIGLDFEEGVRAEAGAMLYMEDGIEMQTASGGLFKGFKRMLTGESFFITTFINRVKGKRYVGFAAPYPGKVIPLDLGESGGSYLCQKDAFLCAAQGIEISVAFSRRLGAGLFGGE----GFILQRLEGDGLAFVHAGGTVVRKQLQAGESLRVDTGCLVAFAPTVDYDIQFVGGFKNALFGGEGVFLARLTGPGTVYLQTLPFARL 219          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: B3QRX8_CHLT3 (Uncharacterized protein n=2 Tax=Chloroherpeton thalassium TaxID=100716 RepID=B3QRX8_CHLT3)

HSP 1 Score: 77.4 bits (189), Expect = 1.600e-12
Identity = 67/233 (28.76%), Postives = 108/233 (46.35%), Query Frame = 3
Query:  228 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFK------SDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRLSRAGRASAQRASGG 902
            GD  ++++V L   + + A   A +Y   G+  +    G +     + GFK      S  I  F N+G+G   +  AAP+PGK++P+ L Q  G  L +   FL       ++ A  +    G F          ++RL G G+ +I  GG  +++ L  GES+ V+ GC+ A++ +         G        +G F  K+TGPG+V++QS    R+  A R  A   SGG
Sbjct:   25 GDDMQIVEVELDPQEGVRAEVGAMLYMEDGIQMQTDTGGGL-----FSGFKRMLTGESFFITSFVNQGHGKQRVAFAAPYPGKIVPLDLGQLGGEFLCQKDGFLCCANGVDINVAFTRRIGSGLFGGE----GFILQRLTGDGLAFIHAGGTIIKRELQAGESLRVDTGCLVALAPSVDYDINFVGGFKNALFGGEGLFLAKLTGPGTVYLQSLPFSRI--ADRILASLPSGG 246          
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A4R6BV49_9STAP (AIM24 family protein n=2 Tax=Macrococcus TaxID=69965 RepID=A0A4R6BV49_9STAP)

HSP 1 Score: 77.4 bits (189), Expect = 1.850e-12
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  399 FTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
            FTN+G    ++ LAAP+PGK+IP+ L +  G  + +   FL +    +V  A  K    G     F      M+RL G GM +I  GGA ++K L  GE + V+ GC+  ++ + K   E   G+  +    +G +  ++ GPG+VFIQS    RL
Sbjct:   81 FTNKGKSKEHVYLAAPYPGKIIPIDLNRVGGEFICQKDAFLGAAKGVSVGIAMQKKIGVG----FFGGEGFIMQRLTGDGMAFIHAGGAIIKKDLKAGEVLQVDTGCLVGMTSSVKYDLERVPGIKTKLFGGEGVWFARLEGPGTVFIQSLPFSRL 232          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIZ3_ECTSI4.280e-11973.75Altered inheritance of mitochondria protein 24, mi... [more]
A0A2K1NT36_9BACT2.890e-1428.37Uncharacterized protein n=1 Tax=Petrotoga sp. 9PWA... [more]
B7KDN9_GLOC75.220e-1429.49Uncharacterized protein n=1 Tax=Gloeothece citrifo... [more]
D8R929_SELML2.170e-1329.33Altered inheritance of mitochondria protein 24, mi... [more]
A0A524PQU6_9CHLR6.360e-1328.04TIGR00266 family protein n=1 Tax=Anaerolineales ba... [more]
UPI000B97F9976.360e-1329.22TIGR00266 family protein n=1 Tax=Petroclostridium ... [more]
A0A316CV55_9BACT9.050e-1327.44Uncharacterized protein (TIGR00266 family) n=1 Tax... [more]
A0A101F7P3_9FIRM1.580e-1228.04Uncharacterized protein n=2 Tax=Clostridia TaxID=1... [more]
B3QRX8_CHLT31.600e-1228.76Uncharacterized protein n=2 Tax=Chloroherpeton tha... [more]
A0A4R6BV49_9STAP1.850e-1233.97AIM24 family protein n=2 Tax=Macrococcus TaxID=699... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig1contigC-linearis_contig1:1639778..1643160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score88.2
Seed ortholog evalue6.2e-15
Seed eggNOG ortholog645991.Sgly_1704
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial biogenesis AIM24
EggNOG OGs1TPN2@1239,2499B@186801,262ZZ@186807,COG2013@1,COG2013@2
Ec32 ortholog descriptionTryptophan RNA-binding attenuator protein-like domain
Ec32 orthologEc-07_005040.1
COG Functional cat.S
Best tax levelPeptococcaceae
Best eggNOG OGNA|NA|NA
Exons5
Model size1189
Cds size789
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927277.9209282-UTR-C-linearis_contig1:1639777..16399831622927277.9209282-UTR-C-linearis_contig1:1639777..1639983Chordaria linearis ClinC8C monoicousUTRC-linearis_contig1 1639778..1639983 -
1690879600.4688916-UTR-C-linearis_contig1:1639777..16399831690879600.4688916-UTR-C-linearis_contig1:1639777..1639983Chordaria linearis ClinC8C monoicousUTRC-linearis_contig1 1639778..1639983 -
1622927278.0000753-UTR-C-linearis_contig1:1642966..16431601622927278.0000753-UTR-C-linearis_contig1:1642966..1643160Chordaria linearis ClinC8C monoicousUTRC-linearis_contig1 1642967..1643160 -
1690879600.5451329-UTR-C-linearis_contig1:1642966..16431601690879600.5451329-UTR-C-linearis_contig1:1642966..1643160Chordaria linearis ClinC8C monoicousUTRC-linearis_contig1 1642967..1643160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927277.9357104-CDS-C-linearis_contig1:1639983..16401501622927277.9357104-CDS-C-linearis_contig1:1639983..1640150Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1639984..1640150 -
1690879600.482045-CDS-C-linearis_contig1:1639983..16401501690879600.482045-CDS-C-linearis_contig1:1639983..1640150Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1639984..1640150 -
1622927277.946871-CDS-C-linearis_contig1:1640488..16406501622927277.946871-CDS-C-linearis_contig1:1640488..1640650Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1640489..1640650 -
1690879600.4992766-CDS-C-linearis_contig1:1640488..16406501690879600.4992766-CDS-C-linearis_contig1:1640488..1640650Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1640489..1640650 -
1622927277.9601104-CDS-C-linearis_contig1:1640872..16410031622927277.9601104-CDS-C-linearis_contig1:1640872..1641003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1640873..1641003 -
1690879600.5171711-CDS-C-linearis_contig1:1640872..16410031690879600.5171711-CDS-C-linearis_contig1:1640872..1641003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1640873..1641003 -
1622927277.974086-CDS-C-linearis_contig1:1641506..16416621622927277.974086-CDS-C-linearis_contig1:1641506..1641662Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1641507..1641662 -
1690879600.5293114-CDS-C-linearis_contig1:1641506..16416621690879600.5293114-CDS-C-linearis_contig1:1641506..1641662Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1641507..1641662 -
1622927277.989444-CDS-C-linearis_contig1:1642793..16429661622927277.989444-CDS-C-linearis_contig1:1642793..1642966Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1642794..1642966 -
1690879600.5372334-CDS-C-linearis_contig1:1642793..16429661690879600.5372334-CDS-C-linearis_contig1:1642793..1642966Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1642794..1642966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig1.116.1prot_C-linearis_contig1.116.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig1 1639984..1642966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig1.116.1

>prot_C-linearis_contig1.116.1 ID=prot_C-linearis_contig1.116.1|Name=mRNA_C-linearis_contig1.116.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=263bp
MADASPKFISLGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVG
AVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQTSGTL
LAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCY
IQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQ
GFAVKITGPGSVFIQSTHTGRLSRAGRASAQRASGGSEMMKVAVLTLVAM
IALFSFLDWEEV*
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mRNA from alignment at C-linearis_contig1:1639778..1643160-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig1.116.1 ID=mRNA_C-linearis_contig1.116.1|Name=mRNA_C-linearis_contig1.116.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3383bp|location=Sequence derived from alignment at C-linearis_contig1:1639778..1643160- (Chordaria linearis ClinC8C monoicous)
TGGTGTTCCACACCGCGACCAACCTCTCGGTGCCTATCTTTGCGGCAACT TGAGTGACGTGGGTGTAAAGTTGCAGGAGATAGTGGGGCGAGAGGCGACG GTGTGTGGCGTTACCCAACATACATACCTCAAAGAAAGCGGAGATCAGCG GAGGAACCCCTGTTCGGTTGCGCACACAAGGCAACACCGTCATCATGGCG GACGCATCTCCCAAGTTTATCTCGCTAGGCGACGGCAATGAGGTCCTTCA AGTCGCTCTGGCTGCGGGCGATAGCATTTTGGCGAACGAACGGGCTTTTG TCTATCGAGGACTCGGATTGGCCAGCGAGGCTCAGGCGGTTGGCGCTGTT GGGAGAGCTATCGGATGGTACGTGGGTGCACGTGTACAAAAACATCGTCG CTGTGTGGTGGTCACGAACTCTCCTCTAGCTATTATTCCCCGAAGCTTTG GTTTCACCATTGCTGCCATGAGTTTGATGTCGATGCTGTGATATGTACAC GTGCTAGAATCTAGTGACTAATTTTTCCTTTTACTTTCCCCTCCCCCCCC TTTTTCGCTGCACCATTACACTACCTCCCGGGGAATGATGTCGTGTTTAG ATTATCTTTGCGGGTGTGACTGTTCCTCTGCGTGTTGGATGTTTTATTTT TGTCGACACCTCTCCTTGTCTGCTTCCCTTGTAACATATACGGAGTATGT ATATGCACCTTAGTCGGTGGAGAGGGATCCGACTACAGCAGTACGTAGTA TTTGCCTTGCCGGGGGAACTGGAACGGAACACCCCGGCTTCGTAGTGGTA GCAAGATAGAATCGGGAGGTTATACCCCTGGTTGGTGATGTTGGCGCTCC ACTCTTATTTTATTTTTATTTTTTCCTCACATAGCGTGTATAGGGGAGCG GAGGGCTCCAGACTAATTGTTTCCTGGTTATTTTATCTTTCTCGTGTTTT ATCGCTCTGCTGACCCTTGGGGTCCGTTTTATTTTTCAGTATACCTTTTT AGGTAAGTTAGCTTGTGACCACGGAAATTGGCCGCGTCAAGTGATGGATT AGTACGGAGAGGTTGAGACAGAAGGAGGTACTGGATAGAGACGAGACCGG GATGGTTTTTAATGTGAAGACAACAACAACAACAACAACAACAACAACAA CAAGACAAAACGTTTGCGGGGCATATAGACTTCGTATGTACAACTCCTGG CCTGCCTGCCCCTTCGTTTTGCTGTGAGTGCCCTCGAACATCGTATTTAA AAAAACACAGACTTTGGGCGTCACCCCCAAGCTGACAGTAGACCTAACGG AAGATGGCAAACAGCACCGATTTCAAGGTTGTCTAGTACTTCGAGTATGT ACCTGGTATGTACAACTTGGCGCCAGGATATCCTGATCCTTGGACCGCTT GCCGCCAATTCGTTATTGCACTCATGATTGGAAGTTTTGTTTTTACTTGT GGCGCCAAACGCTACCGCAACTTTCGCAATTACCTGACTTGGCAAAAGGA TCGGGTTCAAGAGCGATAGAATCGTCAAGTTCACCAACGAGGGCAATGGC CCAACGTACCTCGGCTTGGCCGCACCGTTCCCTGGAAAGGTAATCCCCGT GCATTTGCAGACATCAGGGACACTACTCGCCAAGCCTTCGACGTTCCTCG CCAGGTCAGTTCCACGCTTTCAAGAAAATTCTGCATCTATGTATGTACAA CACCGCACCAGTGTCGGCTTCCTGCTGAGACTACTTGACCCGGTGTTTGG GAAGCGCTTGAAGCAGAACCCGTCCTTGGTAGAGTGGAGAAAGCCGGGTG GTCTGCTCGCACCTCCGACCCTCGACCTCGGCGTAGTGCCACGAGACCTT CGCATTGGCATTCCTGGCGGTTTTACGGGGTGCTCTCCATGCAGTGGCGA AACGAATTCGTGGAGGGTTAAAATCGGTCCCAGGGTTAAAATCGGTCCCA AGTCACGCTGCCGCACACCCGTTACCTTGCCGTCTCTACTGCTGTGCATA CGACAATCCAACAGATACCTGATGTATGTTGAAAACCTAGGTCTTCTTGT GGAGATATTGGATCCGAAGTGTAGAGGTGTTGCGTGTCACATCTCAGCTG TGGTGGATCAAGCTTGCTGCCCTGCGTCGTGCCTGCCTACGCTGTTGATT GTGTCAGCGAAACAAGCAACACCGTTTCAGCGGCGAAGATAAAGCTCAAC CCAGAAGGACCGTTTCCTCAGCACTTTCCTCAGCACAGCATCGAAATGCG TAGACTGGCAGGAGCAGGGATGTGCTACATTCAAGGGGGTGAGCACAGCG TGGGTTGTTCGTAATAGGCATGTTTGCTCCTGACTTTTGGTTTTATTTGG TGTTGTCACTGCTGTTATCGCAGTTGTTCCTCGGCGGTGGAGATTGACTA TGTTTTCGGTGCCTAGCTGTAAGGTCAAAGTGTAGGTACATGGAAACGGT TTAACACGCAAAGGTATCACCCTGAAAGTGTGATATATCTTCCTCGTTTT CTCTCTCCAGGTGGCGCGGCCGTGCAGAAGGCGCTGGGGCGTGGGGAGTC CATGGTGGTGGAGTTTGGATGCGTTGCTGCAGTCTCGGAGGCTTGCAAAA TCGTTGCAGAGGAGAGAACTGGACTCATACGAGAGCCGCCGTACGCCCAA GGCTTCGCTGTGAAGATCACTGGTGAGCCTTCATGAGTAACCACGCTATT TCTCTGTCATGATCAGCTACAGTCGGCCTGGCGGTATAACCATGTAGAGC GGGTCCATCCTACCACCCATTTCACCGTCACTACGGTCGATGTACATGAG TTTTGGCTGGTATCGTCGCCTGTGTTTTATTCTTCCCAAGAACAGTCTCG ATTCTCAACAGGTGGAGTTGGCGTCGTTTTTTTTTTGCTTTCGTCGCCTT TGCTTCCCGTGAAGTTGTTGTGTGTTTCGCGATTTGGTTTACCTGTTTCG ATAAGTTGATCTGCTATTGCTGTATCCTTTCGCCCGGTGCATGGAATCCC TGCTTCACAGGTCCGGGTAGCGTCTTCATTCAGTCGACGCACACGGGGCG GTTATCAAGAGCGGGTAGAGCATCGGCTCAACGAGCATCAGGGGGGTCGG AGATGATGAAGGTTGCTGTGTTAACGCTTGTTGCGATGATAGCTTTGTTT TCGTTCCTGGATTGGGAGGAAGTGTAGACCCATGGGCTACGGCGGCACGT GTGGTATTACGGACCAGAATGGCAGGTTTTGCGCTTTCGAAATGAGAGGA CGGACGGATTGGTGCCATCCCAACGGGCGCTGCAAAAATGAACTAAGGGT GTCCATCGATCATCAATCAAAAGTGATCCTTTTCTCAAACATCGTTCTTC ACCCGGTTTTACCCGGAAATCTGTATACCCTCT
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Coding sequence (CDS) from alignment at C-linearis_contig1:1639778..1643160-

>mRNA_C-linearis_contig1.116.1 ID=mRNA_C-linearis_contig1.116.1|Name=mRNA_C-linearis_contig1.116.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at C-linearis_contig1:1639778..1643160- (Chordaria linearis ClinC8C monoicous)
ATGGCGGACGCATCTCCCAAGTTTATCTCGCTAGGCGACGGCAATGAGGT
CCTTCAAGTCGCTCTGGCTGCGGGCGATAGCATTTTGGCGAACGAACGGG
CTTTTGTCTATCGAGGACTCGGATTGGCCAGCGAGGCTCAGGCGGTTGGC
GCTGTTGGGAGAGCTATCGGATGATGGCGGACGCATCTCCCAAGTTTATC
TCGCTAGGCGACGGCAATGAGGTCCTTCAAGTCGCTCTGGCTGCGGGCGA
TAGCATTTTGGCGAACGAACGGGCTTTTGTCTATCGAGGACTCGGATTGG
CCAGCGAGGCTCAGGCGGTTGGCGCTGTTGGGAGAGCTATCGGATGGATC
GGGTTCAAGAGCGATAGAATCGTCAAGTTCACCAACGAGGGCAATGGCCC
AACGTACCTCGGCTTGGCCGCACCGTTCCCTGGAAAGGTAATCCCCGTGC
ATTTGCAGACATCAGGGACACTACTCGCCAAGCCTTCGACGTTCCTCGCC
AGGATCGGGTTCAAGAGCGATAGAATCGTCAAGTTCACCAACGAGGGCAA
TGGCCCAACGTACCTCGGCTTGGCCGCACCGTTCCCTGGAAAGGTAATCC
CCGTGCATTTGCAGACATCAGGGACACTACTCGCCAAGCCTTCGACGTTC
CTCGCCAGCGAAACAAGCAACACCGTTTCAGCGGCGAAGATAAAGCTCAA
CCCAGAAGGACCGTTTCCTCAGCACTTTCCTCAGCACAGCATCGAAATGC
GTAGACTGGCAGGAGCAGGGATGTGCTACATTCAAGGGGCGAAACAAGCA
ACACCGTTTCAGCGGCGAAGATAAAGCTCAACCCAGAAGGACCGTTTCCT
CAGCACTTTCCTCAGCACAGCATCGAAATGCGTAGACTGGCAGGAGCAGG
GATGTGCTACATTCAAGGGGGTGGCGCGGCCGTGCAGAAGGCGCTGGGGC
GTGGGGAGTCCATGGTGGTGGAGTTTGGATGCGTTGCTGCAGTCTCGGAG
GCTTGCAAAATCGTTGCAGAGGAGAGAACTGGACTCATACGAGAGCCGCC
GTACGCCCAAGGCTTCGCTGTGAAGATCACTGGTGGCGCGGCCGTGCAGA
AGGCGCTGGGGCGTGGGGAGTCCATGGTGGTGGAGTTTGGATGCGTTGCT
GCAGTCTCGGAGGCTTGCAAAATCGTTGCAGAGGAGAGAACTGGACTCAT
ACGAGAGCCGCCGTACGCCCAAGGCTTCGCTGTGAAGATCACTGGTCCGG
GTAGCGTCTTCATTCAGTCGACGCACACGGGGCGGTTATCAAGAGCGGGT
AGAGCATCGGCTCAACGAGCATCAGGGGGGTCGGAGATGATGAAGGTTGC
TGTGTTAACGCTTGTTGCGATGATAGCTTTGTTTTCGTTCCTGGATTGGG
AGGAAGTGTAGGTCCGGGTAGCGTCTTCATTCAGTCGACGCACACGGGGC
GGTTATCAAGAGCGGGTAGAGCATCGGCTCAACGAGCATCAGGGGGGTCG
GAGATGATGAAGGTTGCTGTGTTAACGCTTGTTGCGATGATAGCTTTGTT
TTCGTTCCTGGATTGGGAGGAAGTGTAG
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