mRNA_C-linearis_contig1.116.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: D7FIZ3_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ3_ECTSI) HSP 1 Score: 355 bits (912), Expect = 4.280e-119 Identity = 191/259 (73.75%), Postives = 209/259 (80.69%), Query Frame = 3
Query: 210 PKFISLGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTG-LIREPPYAQGFAVKITGPGSVFIQSTHTGRLSRAGRAS--AQRASGGSEMMKVAVLTLVAMIALFSFLDWEE 977
P+F+SLG+G+EVLQVAL GD+ILANE+AFVYRGLGL E Q G +GRA+GWIG K+DR+VKFTNEGN PTYLGL A PGKVIPV L SGTLLAKPS FL S N +S AKIKL EG Q S+EMR++AGAGMCYI GGGAAVQKALGRGESMVVEFGCVAAVS+ACKIV EER G LIREPPY QGF VKITGPGSVFIQSTHTGRLSRA RA AQ SGG +MMK AVLTLV MI +F+ LDWEE
Sbjct: 18 PRFLSLGEGSEVLQVALCPGDAILANEKAFVYRGLGLQQELQPTGPMGRALGWIGVKNDRVVKFTNEGNSPTYLGLTASLPGKVIPVSLAKSGTLLAKPSVFLCSVVENDISTAKIKLQSEG----QSSQQSVEMRKIAGAGMCYIHGGGAAVQKALGRGESMVVEFGCVAAVSDACKIVPEERNGPLIREPPYFQGFQVKITGPGSVFIQSTHTGRLSRASRADRVAQGGSGGGDMMKAAVLTLVIMIVVFTVLDWEE 272
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A2K1NT36_9BACT (Uncharacterized protein n=1 Tax=Petrotoga sp. 9PWA.NaAc.5.4 TaxID=1434328 RepID=A0A2K1NT36_9BACT) HSP 1 Score: 82.4 bits (202), Expect = 2.890e-14 Identity = 61/215 (28.37%), Postives = 105/215 (48.84%), Query Frame = 3
Query: 228 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAI--GWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
GD +++++ L G+ I A A +Y G+A + G + R + + G +S I F EG+G ++ AP+PGK++P+ L Q +G+ + + +FL + + K G F ++RL G GM +I GG ++K L GE++ V+ GC+ + K + G +G F K+TGPG++++QS RL
Sbjct: 11 GDDMQLVEIELDPGEGIRAEVGAMMYMEDGIAMQTNTGGGLFRGLKRAFAG-ESFFITNFVQEGSGKGHVAFGAPYPGKILPIDLIQFNGSFICQKDSFLCAANGIEIEIEFTKRIGTGLFGGE----GFILQRLEGHGMAFIHAGGTVIEKHLEPGETLRVDTGCIVGFQKTVKYDIQFVGGFKNALFGGEGMFLAKLTGPGTIYLQSLPFSRL 220
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: B7KDN9_GLOC7 (Uncharacterized protein n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7KDN9_GLOC7) HSP 1 Score: 81.3 bits (199), Expect = 5.220e-14 Identity = 64/217 (29.49%), Postives = 98/217 (45.16%), Query Frame = 3
Query: 228 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAV----GRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
GD +++++ L G+ + A A Y G+ + G RA+ GF I F N G + AAP+PGK+IP+ L Q GT + + F+ + + K G F ++RL G G+ +I GGA V+K L GE + V+ GCV A S + E G +G F K+TGPG++++QS +L
Sbjct: 11 GDDLQLVEITLDLGEGVRAEAGAMAYLEQGIEMQTSTGGGFLAGFKRALAGEGFF---ITNFANRGTRRAKVAFAAPYPGKIIPLQLGQLGGTFICQKDAFICAAKGIEIDVEFTKRLGTG----FFGGEGFILQRLQGDGLAFIHAGGALVEKRLMSGEDIRVDTGCVVAFSPTVRYEIEMVKGFKNVLFGGEGLFLAKLTGPGTIYLQSLPLSKL 220
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: D8R929_SELML (Altered inheritance of mitochondria protein 24, mitochondrial n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R929_SELML) HSP 1 Score: 80.5 bits (197), Expect = 2.170e-13 Identity = 66/225 (29.33%), Postives = 105/225 (46.67%), Query Frame = 3
Query: 204 ASPKFISLGDGNEVLQVALAAGDSILANERAFVYRGLGLASEA---QAVGAVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG--FAVKITGPGSVFIQSTHTGRL 860
A+ F G +VLQ+ L + I A + Y + +E Q VG + W+ + D FTN G+ Y+GL AP +++P+ L G ++ + FL S TV + G F + ++L G G+ +I GG+ +QK L RGE +VV+ GC+ A++ A + ++ + R + F +TGPG VFIQS + RL
Sbjct: 22 AATAFQIFGFEAQVLQIMLKPQEKIQAKSGSMCYTSGSIQAEVNVPQENAGVG-VLQWMMGRPDTSTTFTNAGSEDGYIGLGAPSLARILPIDLAVFGGEIICQREAFLGSVNDVTVKHLTPRRVRVGYFGADVG--GLLTQKLVGQGLAFITAGGSVLQKKLSRGELLVVDIGCLVAMTSAVECEIKQASPAARRAFFGGECPFQAHLTGPGVVFIQSLPSQRL 243
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A524PQU6_9CHLR (TIGR00266 family protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524PQU6_9CHLR) HSP 1 Score: 78.6 bits (192), Expect = 6.360e-13 Identity = 60/214 (28.04%), Postives = 102/214 (47.66%), Query Frame = 3
Query: 228 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGW-IGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
GD +++++ L G+ + A Y G+ + G + + + I +S I F N G+ + AAP+PGK+IP+ L G ++ + +FL + + A K G F ++RL G+GM ++ GG ++K L GES+ V+ GC+ A+S+ + G +G F K+TGPG+V++QS RL
Sbjct: 11 GDDLQLVEIELDPGEGVRAEAGTMTYMEDGIQMQTTTGGGIFKGLQRAITGESFFISTFLNTGSTKQHAAFAAPYPGKIIPLSLDDFDGNIICQKDSFLCAAQGIEIEIAFTKRLGAGIFGGE----GFILQRLTGSGMTFVHAGGTVIEKKLAAGESLRVDTGCLVALSKDVDYDIKFVGGFTNALFGGEGLFLAKLTGPGTVYLQSLPFSRL 220
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: UPI000B97F997 (TIGR00266 family protein n=1 Tax=Petroclostridium xylanilyticum TaxID=1792311 RepID=UPI000B97F997) HSP 1 Score: 78.6 bits (192), Expect = 6.360e-13 Identity = 64/219 (29.22%), Postives = 101/219 (46.12%), Query Frame = 3
Query: 228 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFK------SDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
GD +++++ L G+ + A A ++ G+ + G + + GFK S I F N G+G +++ AAP+PGK+IP+ L G L + FL + V A K G F ++RL G GM +I GG ++K L GE + V+ GC+ A S + G +G F ++TGPG+V++QS RL
Sbjct: 11 GDDMQMVEIELDPGEGVRAEAGAMMFMEKGIEMQTSTEGGLFK-----GFKRMITGESFFITTFYNSGHGKSHVAFAAPYPGKIIPLDLGLIGGRFLCQKDAFLCAAKGIEVEIAFTKRIGAG----FFGGEGFILQRLEGNGMAFIHAGGTIIKKELAPGEVLRVDTGCLVAFSPTVDYDIQFIGGFKNALFGGEGLFLARLTGPGTVYLQSLPFSRL 220
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A316CV55_9BACT (Uncharacterized protein (TIGR00266 family) n=1 Tax=Oceanotoga teriensis TaxID=515440 RepID=A0A316CV55_9BACT) HSP 1 Score: 78.2 bits (191), Expect = 9.050e-13 Identity = 59/215 (27.44%), Postives = 101/215 (46.98%), Query Frame = 3
Query: 225 LGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIG-WIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHLQT-SGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
+GD +++++ L G+ + A A +Y + + G + R + +S I F G+G ++ AP+PGK++P++L +GT + + +FL + + K G F ++RL G GM +I GGA V+K L GE + V+ GC+ S + E G +G F K++GPG+V++QS RL
Sbjct: 10 VGDDMQLVEIELDPGEGVRAEAGAMMYMENDIMMQTNTGGGLFRGLKRMFTGESFFITNFVQNGSGKGHVAFGAPYPGKIVPLNLTDFNGTFICQKDSFLCAANGIEIEIELTKKIGTGLFGGE----GFILQRLQGHGMAFIHAGGALVEKQLNAGEILKVDTGCIVGFSNSIHYDIEFIGGFKNALFGGEGMFLAKLSGPGTVYLQSLPFSRL 220
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A101F7P3_9FIRM (Uncharacterized protein n=2 Tax=Clostridia TaxID=186801 RepID=A0A101F7P3_9FIRM) HSP 1 Score: 77.0 bits (188), Expect = 1.580e-12 Identity = 60/214 (28.04%), Postives = 102/214 (47.66%), Query Frame = 3
Query: 225 LGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFKSDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
+GD +++++ L + + A A +Y G+ + + G + +S I F N G Y+G AAP+PGKVIP+ L ++ G+ L + FL + +S A + G F ++RL G G+ ++ GG V+K L GES+ V+ GC+ A + + G +G F ++TGPG+V++Q+ RL
Sbjct: 10 IGDDLQMVEIGLDFEEGVRAEAGAMLYMEDGIEMQTASGGLFKGFKRMLTGESFFITTFINRVKGKRYVGFAAPYPGKVIPLDLGESGGSYLCQKDAFLCAAQGIEISVAFSRRLGAGLFGGE----GFILQRLEGDGLAFVHAGGTVVRKQLQAGESLRVDTGCLVAFAPTVDYDIQFVGGFKNALFGGEGVFLARLTGPGTVYLQTLPFARL 219
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: B3QRX8_CHLT3 (Uncharacterized protein n=2 Tax=Chloroherpeton thalassium TaxID=100716 RepID=B3QRX8_CHLT3) HSP 1 Score: 77.4 bits (189), Expect = 1.600e-12 Identity = 67/233 (28.76%), Postives = 108/233 (46.35%), Query Frame = 3
Query: 228 GDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGAVGRAIGWIGFK------SDRIVKFTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRLSRAGRASAQRASGG 902
GD ++++V L + + A A +Y G+ + G + + GFK S I F N+G+G + AAP+PGK++P+ L Q G L + FL ++ A + G F ++RL G G+ +I GG +++ L GES+ V+ GC+ A++ + G +G F K+TGPG+V++QS R+ A R A SGG
Sbjct: 25 GDDMQIVEVELDPQEGVRAEVGAMLYMEDGIQMQTDTGGGL-----FSGFKRMLTGESFFITSFVNQGHGKQRVAFAAPYPGKIVPLDLGQLGGEFLCQKDGFLCCANGVDINVAFTRRIGSGLFGGE----GFILQRLTGDGLAFIHAGGTIIKRELQAGESLRVDTGCLVALAPSVDYDINFVGGFKNALFGGEGLFLAKLTGPGTVYLQSLPFSRI--ADRILASLPSGG 246
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Match: A0A4R6BV49_9STAP (AIM24 family protein n=2 Tax=Macrococcus TaxID=69965 RepID=A0A4R6BV49_9STAP) HSP 1 Score: 77.4 bits (189), Expect = 1.850e-12 Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 3
Query: 399 FTNEGNGPTYLGLAAPFPGKVIPVHL-QTSGTLLAKPSTFLASETSNTVSAAKIKLNPEGPFPQHFPQHSIEMRRLAGAGMCYIQGGGAAVQKALGRGESMVVEFGCVAAVSEACKIVAEERTGLIREPPYAQG-FAVKITGPGSVFIQSTHTGRL 860
FTN+G ++ LAAP+PGK+IP+ L + G + + FL + +V A K G F M+RL G GM +I GGA ++K L GE + V+ GC+ ++ + K E G+ + +G + ++ GPG+VFIQS RL
Sbjct: 81 FTNKGKSKEHVYLAAPYPGKIIPIDLNRVGGEFICQKDAFLGAAKGVSVGIAMQKKIGVG----FFGGEGFIMQRLTGDGMAFIHAGGAIIKKDLKAGEVLQVDTGCLVGMTSSVKYDLERVPGIKTKLFGGEGVWFARLEGPGTVFIQSLPFSRL 232 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig1.116.1 >prot_C-linearis_contig1.116.1 ID=prot_C-linearis_contig1.116.1|Name=mRNA_C-linearis_contig1.116.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=263bp MADASPKFISLGDGNEVLQVALAAGDSILANERAFVYRGLGLASEAQAVGback to top mRNA from alignment at C-linearis_contig1:1639778..1643160- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig1.116.1 ID=mRNA_C-linearis_contig1.116.1|Name=mRNA_C-linearis_contig1.116.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3383bp|location=Sequence derived from alignment at C-linearis_contig1:1639778..1643160- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig1:1639778..1643160- >mRNA_C-linearis_contig1.116.1 ID=mRNA_C-linearis_contig1.116.1|Name=mRNA_C-linearis_contig1.116.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at C-linearis_contig1:1639778..1643160- (Chordaria linearis ClinC8C monoicous)back to top |