Homology
BLAST of mRNA_C-linearis_contig99.17198.1 vs. uniprot
Match:
A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)
HSP 1 Score: 74.3 bits (181), Expect = 4.190e-13
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 1 SAARQARHDILSGTPIIGAGSDMGNVAGVFEAIARYCPLEGSHLQGLSIYGLATSTASVR 180
SAARQARHDIL GTPI GAG DMGNVAGVFEAIAR CP +GS L S++ A R
Sbjct: 405 SAARQARHDILHGTPITGAGCDMGNVAGVFEAIARACPRQGSPLWPDSVFDQQARVARTR 464
BLAST of mRNA_C-linearis_contig99.17198.1 vs. uniprot
Match:
A0A6H5K6P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P6_9PHAE)
HSP 1 Score: 61.6 bits (148), Expect = 1.010e-8
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 3
Query: 147 LWPGNVHGQRTLVVRTRRDFGLDWRYANNCNIDDHH-RVLQCLTGSVYQATTVTTIP 314
LWP +V Q+ V RTRRDFGLDWRYANNC I +H R + + +A TV TIP
Sbjct: 183 LWPDSVFDQQARVARTRRDFGLDWRYANNCTIGNHSAREVTPDQSARLRAATVITIP 239
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17198.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.19e-13 / Id = 66.67 Expect = 1.01e-8 / Id = 54.39 Sequence A0A6H5KPV6_9PHAE A0A6H5K6P6_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 355 Cds size 354 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930846.2491047-CDS-C-linearis_contig99:617631..617985 1622930846.2491047-CDS-C-linearis_contig99:617631..617985 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 617632..617985 + 1690881279.724326-CDS-C-linearis_contig99:617631..617985 1690881279.724326-CDS-C-linearis_contig99:617631..617985 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 617632..617985 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17198.1
>prot_C-linearis_contig99.17198.1 ID=prot_C-linearis_contig99.17198.1|Name=mRNA_C-linearis_contig99.17198.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
SAARQARHDILSGTPIIGAGSDMGNVAGVFEAIARYCPLEGSHLQGLSIY back to top mRNA from alignment at C-linearis_contig99:617632..617985+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17198.1 ID=mRNA_C-linearis_contig99.17198.1|Name=mRNA_C-linearis_contig99.17198.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at C-linearis_contig99:617632..617985+ (Chordaria linearis ClinC8C monoicous)TCTGCTGCTCGACAGGCCCGTCACGACATCCTGTCCGGTACCCCTATCAT
CGGAGCCGGATCTGACATGGGTAACGTCGCCGGCGTGTTCGAGGCCATTG
CGAGATATTGTCCACTTGAAGGTTCACATCTACAGGGTCTATCTATCTAT
GGCCTGGCAACGTCCACGGCCAGCGTACGCTTGTTGTGCGCACTCGCCGA
GACTTCGGCCTTGACTGGAGGTACGCCAACAACTGCAACATCGACGACCA
CCACCGCGTGCTCCAGTGTCTCACCGGATCAGTCTACCAGGCTACGACCG
TCACCACCATTCCACCATTCCCAATGGTGCATCGACAACCTTCCACGACA
GCGT back to top Coding sequence (CDS) from alignment at C-linearis_contig99:617632..617985+
>mRNA_C-linearis_contig99.17198.1 ID=mRNA_C-linearis_contig99.17198.1|Name=mRNA_C-linearis_contig99.17198.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig99:617632..617985+ (Chordaria linearis ClinC8C monoicous) back to top