mRNA_C-linearis_contig99.17198.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig99.17198.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 4.190e-13 Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 1 Query: 1 SAARQARHDILSGTPIIGAGSDMGNVAGVFEAIARYCPLEGSHLQGLSIYGLATSTASVR 180
SAARQARHDIL GTPI GAG DMGNVAGVFEAIAR CP +GS L S++ A R
Sbjct: 405 SAARQARHDILHGTPITGAGCDMGNVAGVFEAIARACPRQGSPLWPDSVFDQQARVARTR 464
BLAST of mRNA_C-linearis_contig99.17198.1 vs. uniprot
Match: A0A6H5K6P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P6_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 1.010e-8 Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 3 Query: 147 LWPGNVHGQRTLVVRTRRDFGLDWRYANNCNIDDHH-RVLQCLTGSVYQATTVTTIP 314
LWP +V Q+ V RTRRDFGLDWRYANNC I +H R + + +A TV TIP
Sbjct: 183 LWPDSVFDQQARVARTRRDFGLDWRYANNCTIGNHSAREVTPDQSARLRAATVITIP 239 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17198.1 >prot_C-linearis_contig99.17198.1 ID=prot_C-linearis_contig99.17198.1|Name=mRNA_C-linearis_contig99.17198.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp SAARQARHDILSGTPIIGAGSDMGNVAGVFEAIARYCPLEGSHLQGLSIYback to top mRNA from alignment at C-linearis_contig99:617632..617985+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17198.1 ID=mRNA_C-linearis_contig99.17198.1|Name=mRNA_C-linearis_contig99.17198.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at C-linearis_contig99:617632..617985+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:617632..617985+ >mRNA_C-linearis_contig99.17198.1 ID=mRNA_C-linearis_contig99.17198.1|Name=mRNA_C-linearis_contig99.17198.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig99:617632..617985+ (Chordaria linearis ClinC8C monoicous)back to top |