Homology
BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Match:
A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE)
HSP 1 Score: 383 bits (984), Expect = 4.110e-127
Identity = 259/402 (64.43%), Postives = 289/402 (71.89%), Query Frame = 1
Query: 16 DGSTTPAPXXXXXXDAEMQHTGPMVAVYLDNESVEKLHREYPGANPGRLRKAVIQYNPSADQRSLYERHFGGSATVKLTGEASSENRLALTASVSSAGGSVEPQSLSCAVDVTPGGVGGGPLGSTVLIEQIKRAGALTEESWKGQLPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEGGGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQ-SQNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------LRREEVDMLKFKRVSIMQEMLTCSQFHHVFEDLNADDGLVPGMPDEEVEGGE 1158
D +T PAP +Q TGPMVAVYLD+ S+EKL +YPG NPGRLRK VI+Y+PS +QR LYE FG SATVKLTGEASSENR+AL ASVSSAG SVEP SLSCAVDVTPG VGGGPLGSTVLIEQIKR GA+ E+SWKG LPALSAHERDF +EEGS+NKLDEPLTL GSICRADWVEG +G CRTT GGGKREDGWTPQ C +CN+ E+SPCRDIYK FD ++ RINELQPP E+ S S++P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LRREE+++L+ KR +M +ML CSQFHHV ED NADDGLVP M ++ EGGE
Sbjct: 40 DATTAPAPAPSPP----LQRTGPMVAVYLDDSSIEKLQMKYPGTNPGRLRKVVIEYDPSDEQRGLYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEVGGGPLGSTVLIEQIKRVGAVAEDSWKGLLPALSAHERDFLSEEGSYNKLDEPLTLTGSICRADWVEGMTGVCRTTTAGGGKREDGWTPQPCTICNSLESSPCRDIYKEFDALNTRINELQPPSETSSDGSKSPGTSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAFEGSAGTAVGGGDENALSGRQGGHSRKGEGGEKESEEXXXXXXXXXEERLRREELEVLEEKRTDVMVKMLKCSQFHHVLEDSNADDGLVPDMSGDDEEGGE 437
BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Match:
D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI)
HSP 1 Score: 370 bits (949), Expect = 9.590e-122
Identity = 246/416 (59.13%), Postives = 273/416 (65.62%), Query Frame = 1
Query: 1 SAEKPDGSTTPAPXXXXXXDAEMQHTGPMVAVYLDNESVEKLHREYPGANPGRLRKAVIQYNPSADQRSLYERHFGGSATVKLTGEASSENRLALTASVSSAGGSVEPQSLSCAVDVTPGGVGGGPLGSTVLIEQIKRAGALTEESWKGQLPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEGGGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQSQNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------LRREEVDMLKFKRVSIMQEMLTCSQFHHVFEDLNADDGLVPGM--PDEEVEGGEDATSG 1173
+A K D +T P XXXXXX +Q TGPMVAVYLD+ S+EKL EYPG PGRLRK VI+Y+PS +QR LYE FGGSATVK+TGEA S+NRLAL ASVSSAG SVEP SLSCAVDVTPG VGGGPLGSTVLIEQIKR GAL E+SWKG LP LSAHERDF +EEGS+NKLDEPLTL GSICRADWVE +G CRTT GGGKREDGWTPQ C +CNT E+SPCRDI+K FD +S RI ELQP E+ S P XXXXXXXXXXXXXXXXXXXXXXXXXX LRREE+++L+ KR+ +M EM CS+FHHV ED ADDGLVPGM DEE E G+ A G
Sbjct: 35 NAVKGDATTAPXXXXXXXXXXPLQRTGPMVAVYLDDSSIEKLQMEYPGTKPGRLRKVVIEYDPSDEQRGLYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDVGGGPLGSTVLIEQIKRVGALAEDSWKGLLPPLSAHERDFPSEEGSYNKLDEPLTLTGSICRADWVEPMTGVCRTTTAGGGKREDGWTPQACSICNTLESSPCRDIHKKFDAVSTRIYELQPTSETSSDGSKPPGXXXXXXXXXXXXXXXXXXXXXXXXXXKQTEATEVVAGSDRGAGRSGTDIASEGSAGPAVGGGDENALSGRHGGHSPSRKGEVGEKESVAGGSGEPETEEERLRREELEVLEDKRMVVMVEMFRCSKFHHVLEDSYADDGLVPGMLGDDEEGEEGDAAPGG 450
BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Match:
D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI)
HSP 1 Score: 171 bits (434), Expect = 9.370e-47
Identity = 92/194 (47.42%), Postives = 120/194 (61.86%), Query Frame = 1
Query: 208 LYERHFGGSATVKLTGEASSENRLALTASVSSAGGSVEPQSLSCAVDVTPGGV------------GGGPLGSTVLIEQIKRAGALTEESWKGQLPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEGGGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQS 753
+Y F G A V +TG+ASS R AL ASVS AG VEP SLS +D++P + G GPL S VLIEQ K+AGA EE W+G LP + AH+R F +E G++ +L EP+T+ G+ICRADWV+G S CR T EGG KRE+ W P C +C F SPC+ I++ F SKR +E E+E ++
Sbjct: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPMLAHDRRFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTYETEQEA 194
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 4.11e-127 / Id = 64.43 Expect = 9.59e-122 / Id = 59.13 Expect = 9.37e-47 / Id = 47.42 Sequence A0A6H5JUT1_9PHAE D7FZ55_ECTSI D8LQJ5_ECTSI
Match Name E-value Identity Description
A0A6H5JUT1_9PHAE 4.110e-127 64.43 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FZ55_ECTSI 9.590e-122 59.13 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D8LQJ5_ECTSI 9.370e-47 47.42 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 4 Model size 1209 Cds size 1209 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930849.6891124-CDS-C-linearis_contig99:312440..312686 1622930849.6891124-CDS-C-linearis_contig99:312440..312686 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 312441..312686 + 1690881281.4784133-CDS-C-linearis_contig99:312440..312686 1690881281.4784133-CDS-C-linearis_contig99:312440..312686 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 312441..312686 + 1622930849.7101293-CDS-C-linearis_contig99:312968..313154 1622930849.7101293-CDS-C-linearis_contig99:312968..313154 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 312969..313154 + 1690881281.4928527-CDS-C-linearis_contig99:312968..313154 1690881281.4928527-CDS-C-linearis_contig99:312968..313154 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 312969..313154 + 1622930849.7306778-CDS-C-linearis_contig99:313630..313887 1622930849.7306778-CDS-C-linearis_contig99:313630..313887 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 313631..313887 + 1690881281.5015178-CDS-C-linearis_contig99:313630..313887 1690881281.5015178-CDS-C-linearis_contig99:313630..313887 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 313631..313887 + 1622930849.7470436-CDS-C-linearis_contig99:314097..314617 1622930849.7470436-CDS-C-linearis_contig99:314097..314617 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 314098..314617 + 1690881281.5100646-CDS-C-linearis_contig99:314097..314617 1690881281.5100646-CDS-C-linearis_contig99:314097..314617 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 314098..314617 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17169.1
>prot_C-linearis_contig99.17169.1 ID=prot_C-linearis_contig99.17169.1|Name=mRNA_C-linearis_contig99.17169.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=403bp
SAEKPDGSTTPAPTPTPAPDAEMQHTGPMVAVYLDNESVEKLHREYPGAN back to top mRNA from alignment at C-linearis_contig99:312441..314617+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17169.1 ID=mRNA_C-linearis_contig99.17169.1|Name=mRNA_C-linearis_contig99.17169.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2177bp|location=Sequence derived from alignment at C-linearis_contig99:312441..314617+ (Chordaria linearis ClinC8C monoicous)TCAGCAGAAAAGCCCGATGGATCAACCACGCCTGCGCCAACACCAACACC
AGCACCAGACGCAGAGATGCAGCACACCGGGCCTATGGTGGCGGTTTACC
TAGACAACGAATCCGTGGAAAAGCTGCACCGAGAGTACCCGGGCGCTAAC
CCCGGGCGGCTGAGGAAAGCGGTGATCCAGTACAACCCTTCCGCTGATCA
GCGCAGCTTGTATGAAAGGCACTTCGGTGGCTCGGCTACAGTCAAG GTAT
GTATCGATGGTAGACTAGTAGGACACGACCGCTCCCTGTTTCCTGCAGCA
TTGAGGTTACACATTTCGGTAAACCTCGTCACTCCAGCATCACTTCTCAT
CTCGTGACTACACGCTCGAAACGATGGTTGAAAGCTCGATGGTGTGTTGC
GTTCAACACACGCCAACACAAACATTCCCACGGCTTGCAGCCATGCACAC
CCATGATTTCTTACCTCTTCCCTCTCTCGCCCTTCTCTCCCGCAATGTGA
TGCTGTGATAATAATTTGCCGTGAAAAGTTAACCGGCGAAGCTTCCAGCG
AAAACCGCCTTGCCCTGACGGCTTCGGTGTCTAGTGCCGGGGGCTCCGTG
GAGCCGCAGTCTCTGTCCTGCGCCGTGGACGTAACCCCGGGGGGTGTGGG
TGGAGGTCCCCTAGGCAGCACGGTCCTCATCGAGCAGATCAAGCGGGCTG
GGGCACTCACGGAG GTGATTGACATTGACATTGACATTGACATGATGCTT
TCTGTGTTGTTGCTTTAGCCGATAGACTAGACTCATCAAGACCAATGTTA
TTGTTGTAGAAATTTTGGTAATCCCATCTTTCCCGTTCTGACTCATCCAT
GTCCCCCGAAACCCCTTGCAAACCAAGCTACGAAGTATACTCTTTACAAG
CTAACCTGTCTTGTCCACTAGGCAACGTCCGATGACACCTTTGTAAAAAT
TTCTTTACTTTCCTTGTGCGAGCCGAAGCTATAGATAAAATTTGTTCGTC
TCTTTTTCGAAATTCCAACCTACATACAATCTAGCAAACACAATCGGCCT
TCAACCAGCATCTATATGTAGAGCACCGTATCAGTTGCTCTTGTTGGTCT
CTATGTATGTACTTTAAAATATGTACTTCGATGTTTGTATGTATGTCGCA
CAACTATAGACACGCTGGCTCTTTTTATTTGACGCACCAGGAATCGTGGA
AAGGTCAGCTTCCCGCCCTTTCGGCCCACGAAAGAGACTTCTCGACCGAG
GAGGGCAGCTTCAACAAACTAGACGAGCCCCTCACTCTCCAGGGCTCAAT
TTGCCGAGCGGATTGGGTGGAAGGCAAGAGCGGCTTTTGCCGAACCACGG
CCGAAGGAGGGGGGAAGCGAGAGGACGGATGGACGCCCCAGGTCTGCCCC
ATGTGCAACACGTTCGAAGCTAGTCCGTGCCGAGATATTTACAAAAT GTG
AGTACTTGTTCTCTTGATTGCATTCTCCGTGGCCGAGGTTTGTCCACCTT
CGAGGGTCTATTTTATAGGAGTAAATCTTTTGAACGTCACCAAATGATCT
CTTTCTCTTCCACTGCTGCTGTCGGAAGAGGTCCAATGTTACCTCGCCGG
TATTTTGTCGGTCTGACGTATTTCCTGACTGCCTGATCTCTACCCTCCGC
CCAACAGATTCGATAGAATGTCCAAGAGAATAAACGAGCTCCAACCGCCG
AAAGAGTCTGAGAGTCAGAGTCAGAATCCTTCCGCCGAAAGTTCTTCAGG
AACTCCCTCAGAAGCTTCCTCTGCAGAAGACAACGAACGAGGTGCTTTCA
AGAACGAATCGCGATCTGAGAGCAATGATGCCGCTGAAAAGTCTAGCCTC
GGCGGTGAAAACGCGATTTCGAGCGGAGAAGGGAAAGGCAGCATAGAGGG
TAAGAGTAAGGGCAAAGGTCCCCAGGAGAGCAAAGGCGAAGAGCCGGAGA
CGGAGACGGAAGATGAGAAGCTGCGACGGGAGGAGGTGGACATGCTAAAG
TTCAAGAGGGTTTCGATCATGCAAGAGATGCTCACGTGCTCGCAGTTCCA
CCACGTGTTTGAGGACTTGAATGCTGACGATGGATTGGTGCCGGGCATGC
CTGATGAGGAGGTAGAGGGCGGTGAAGACGCGACCTCTGGGACGGGCAGT
GGGGCCGGGGAGGGCGAAAGTAGCGGC back to top Coding sequence (CDS) from alignment at C-linearis_contig99:312441..314617+
>mRNA_C-linearis_contig99.17169.1 ID=mRNA_C-linearis_contig99.17169.1|Name=mRNA_C-linearis_contig99.17169.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2418bp|location=Sequence derived from alignment at C-linearis_contig99:312441..314617+ (Chordaria linearis ClinC8C monoicous) back to top